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Volumn 8, Issue 1, 2008, Pages

Accounting for horizontal gene transfers explains conflicting hypotheses regarding the position of aquificales in the phylogeny of Bacteria

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN;

EID: 56349169406     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-8-272     Document Type: Article
Times cited : (70)

References (74)
  • 2
    • 15544380021 scopus 로고    scopus 로고
    • Prokaryotic phylogenies inferred from protein structural domains
    • Prokaryotic phylogenies inferred from protein structural domains. EJ Deeds H Hennessey EI Shakhnovich, Gen Res 2005 15 393 402
    • (2005) Gen Res , vol.15 , pp. 393-402
    • Deeds, E.J.1    Hennessey, H.2    Shakhnovich, E.I.3
  • 3
    • 0032955637 scopus 로고    scopus 로고
    • RNA polymerase of Aquifex pyrophilus: Implications for the evolution of the bacterial rpoBC operon and extremely thermophilic bacteria
    • 10198119
    • RNA polymerase of Aquifex pyrophilus: implications for the evolution of the bacterial rpoBC operon and extremely thermophilic bacteria. HP Klenk TD Meier P Durovic V Schwass F Lottspeich PP Dennis W Zillig, J Mol Evol 1999 48 528 541 10198119
    • (1999) J Mol Evol , vol.48 , pp. 528-541
    • Klenk, H.P.1    Meier, T.D.2    Durovic, P.3    Schwass, V.4    Lottspeich, F.5    Dennis, P.P.6    Zillig, W.7
  • 4
    • 0036155782 scopus 로고    scopus 로고
    • The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification
    • 11837318
    • The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification. T Cavalier-Smith, Int J Syst Evol Microbiol 2002 52 7 76 11837318
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 7-76
    • Cavalier-Smith, T.1
  • 5
    • 2642588849 scopus 로고    scopus 로고
    • A genomic perspective on the relationship between the Aquificales and the epsilon-Proteobacteria
    • 15214637
    • A genomic perspective on the relationship between the Aquificales and the epsilon-Proteobacteria. T Coenye P Vandamme, Syst Appl Microbiol 2004 27 313 322 15214637
    • (2004) Syst Appl Microbiol , vol.27 , pp. 313-322
    • Coenye, T.1    Vandamme, P.2
  • 6
    • 2542452389 scopus 로고    scopus 로고
    • Signature sequences in diverse proteins provide evidence for the late divergence of the Order Aquificales
    • 15179606
    • Signature sequences in diverse proteins provide evidence for the late divergence of the Order Aquificales. E Griffiths RS Gupta, Int Microbiol 2004 7 41 52 15179606
    • (2004) Int Microbiol , vol.7 , pp. 41-52
    • Griffiths, E.1    Gupta, R.S.2
  • 7
    • 33846349924 scopus 로고    scopus 로고
    • Rooting the tree of life by transition analyses
    • 16834776
    • Rooting the tree of life by transition analyses. T Cavalier-Smith, Biol Direct 2006 1 19 19 16834776
    • (2006) Biol Direct , vol.1 , pp. 19-19
    • Cavalier-Smith, T.1
  • 8
    • 33644907541 scopus 로고    scopus 로고
    • Dichotomy of major bacterial phyla inferred from gene arrangement comparisons
    • Dichotomy of major bacterial phyla inferred from gene arrangement comparisons. T Kunisawa, J of Theor Biol 2006 239 367 375
    • (2006) J of Theor Biol , vol.239 , pp. 367-375
    • Kunisawa, T.1
  • 9
    • 33745468278 scopus 로고    scopus 로고
    • Cell evolution and Earth history: Stasis and revolution
    • Cell evolution and Earth history: stasis and revolution. T Cavalier-Smith, Philos T R Soc B 2006 361 969 1006
    • (2006) Philos T R Soc B , vol.361 , pp. 969-1006
    • Cavalier-Smith, T.1
  • 10
    • 0033616714 scopus 로고    scopus 로고
    • Horizontal gene transfer among genomes: The complexity hypothesis
    • Horizontal gene transfer among genomes: the complexity hypothesis. R Jain MC Rivera JA Lake, P Natl A Sci USA 1999 96 3801 3806
    • (1999) P Natl a Sci USa , vol.96 , pp. 3801-3806
    • Jain, R.1    Rivera, M.C.2    Lake, J.A.3
  • 11
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Cases in which parsimony or compatibility methods will be positively misleading. J Felsenstein, Syst Zool 1978 27 401 410
    • (1978) Syst Zool , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 12
    • 27744524191 scopus 로고    scopus 로고
    • An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics
    • 16243762
    • An empirical assessment of long-branch attraction artefacts in deep eukaryotic phylogenomics. H Brinkmann M van der Giezen Y Zhou G Poncelin De Raucourt H Philippe, Syst Biol 2005 54 743 757 16243762
    • (2005) Syst Biol , vol.54 , pp. 743-757
    • Brinkmann, H.1    Der Van, G.M.2    Zhou, Y.3    Poncelin De Raucourt, G.4    Philippe, H.5
  • 13
    • 0024958864 scopus 로고
    • The Deinococcus-Thermus phylum and the effect of rRNA composition on phylogenetic tree construction
    • 11542160
    • The Deinococcus-Thermus phylum and the effect of rRNA composition on phylogenetic tree construction. WG Weisburg SJ Giovannoni CR Woese, Syst Appl Microbiol 1989 11 128 134 11542160
    • (1989) Syst Appl Microbiol , vol.11 , pp. 128-134
    • Weisburg, W.G.1    Giovannoni, S.J.2    Woese, C.R.3
  • 14
    • 0033004743 scopus 로고    scopus 로고
    • Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions
    • 10093217
    • Compositional bias may affect both DNA-based and protein-based phylogenetic reconstructions. PG Foster DA Hickey, J Mol Evol 1999 48 284 290 10093217
    • (1999) J Mol Evol , vol.48 , pp. 284-290
    • Foster, P.G.1    Hickey, D.A.2
  • 15
    • 33747757566 scopus 로고    scopus 로고
    • Fossil evidence of Archaean life
    • Fossil evidence of Archaean life. JW Schopf, Philos T R Soc B 2006 361 869 85
    • (2006) Philos T R Soc B , vol.361 , pp. 869-885
    • Schopf, J.W.1
  • 16
    • 0030900384 scopus 로고    scopus 로고
    • Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes
    • 9169555
    • Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes. N Galtier JR Lobry, J Mol Evol 1997 44 632 636 9169555
    • (1997) J Mol Evol , vol.44 , pp. 632-636
    • Galtier, N.1    Lobry, J.R.2
  • 18
    • 0033793019 scopus 로고    scopus 로고
    • Rare genomic changes as a tool for phylogenetics
    • 11050348
    • Rare genomic changes as a tool for phylogenetics. A Rokas PW Holland, Trends Ecol Evol 2000 15 454 459 11050348
    • (2000) Trends Ecol Evol , vol.15 , pp. 454-459
    • Rokas, A.1    Holland, P.W.2
  • 21
    • 56349110446 scopus 로고    scopus 로고
    • The HOGENOM database. http://pbil.univ-lyon1.fr/databases/hogenom3.html
    • The HOGENOM Database
  • 23
  • 24
    • 38349128272 scopus 로고    scopus 로고
    • Alternative methods for concatenation of core genes indicate a lack of resolution in deep nodes of the prokaryotic phylogeny
    • 17940208
    • Alternative methods for concatenation of core genes indicate a lack of resolution in deep nodes of the prokaryotic phylogeny. E Bapteste E Susko J Leigh I Ruiz-Trillo J Bucknam WF Doolittle, Mol Biol Evol 2008 25 83 91 17940208
    • (2008) Mol Biol Evol , vol.25 , pp. 83-91
    • Bapteste, E.1    Susko, E.2    Leigh, J.3    Ruiz-Trillo, I.4    Bucknam, J.5    Doolittle, W.F.6
  • 25
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
    • 7932792
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. Z Yang, J Mol Evol 1994 39 306 314 7932792
    • (1994) J Mol Evol , vol.39 , pp. 306-314
    • Yang, Z.1
  • 26
    • 34248159030 scopus 로고    scopus 로고
    • Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model
    • Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model. N Lartillot H Brinkmann H Philippe, BMC Evol Biol 2007 1 S4 S4
    • (2007) BMC Evol Biol , vol.1
    • Lartillot, N.1    Brinkmann, H.2    Philippe, H.3
  • 27
    • 0037118037 scopus 로고    scopus 로고
    • Phylogeny: A non-hyperthermophilic ancestor for bacteria
    • 12015592
    • Phylogeny: a non-hyperthermophilic ancestor for bacteria. C Brochier H Philippe, Nature 2002 417 244 244 12015592
    • (2002) Nature , vol.417 , pp. 244-244
    • Brochier, C.1    Philippe, H.2
  • 28
    • 10644230266 scopus 로고    scopus 로고
    • A genomic timescale of prokaryote evolution: Insights into the origin of methanogenesis, phototrophy, and the colonization of land
    • 15535883
    • A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land. FU Battistuzzi A Feijao SB Hedges, BMC Evol Biol 2004 4 44 44 15535883
    • (2004) BMC Evol Biol , vol.4 , pp. 44-44
    • Battistuzzi, F.U.1    Feijao, A.2    Hedges, S.B.3
  • 29
    • 23044457732 scopus 로고    scopus 로고
    • Automatic selection of representative proteins for bacterial phylogeny
    • 15927057
    • Automatic selection of representative proteins for bacterial phylogeny. M Bern D Goldberg, BMC Evol Biol 2005 5 34 34 15927057
    • (2005) BMC Evol Biol , vol.5 , pp. 34-34
    • Bern, M.1    Goldberg, D.2
  • 30
    • 0036061865 scopus 로고    scopus 로고
    • A phylogenomic approach to bacterial phylogeny: Evidence of a core of genes sharing a common history
    • 12097345
    • A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history. V Daubin M Gouy G Perrière, Genome Res 2002 12 7 1080 1090 12097345
    • (2002) Genome Res , vol.12 , Issue.7 , pp. 1080-1090
    • Daubin, V.1    Gouy, M.2    Perrière, G.3
  • 31
    • 33744927902 scopus 로고    scopus 로고
    • The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance
    • 16704931
    • The Planctomycetes, Verrucomicrobia, Chlamydiae and sister phyla comprise a superphylum with biotechnological and medical relevance. M Wagner M Horn, Curr Opin Biotech 2006 17 241 249 16704931
    • (2006) Curr Opin Biotech , vol.17 , pp. 241-249
    • Wagner, M.1    Horn, M.2
  • 34
    • 33646892649 scopus 로고    scopus 로고
    • Matched-pairs tests of homogeneity with applications to homologous nucleotide sequences
    • 16492684
    • Matched-pairs tests of homogeneity with applications to homologous nucleotide sequences. F Ababneh LS Jermiin C Ma J Robinson, Bioinformatics 2006 22 1225 31 16492684
    • (2006) Bioinformatics , vol.22 , pp. 1225-1231
    • Ababneh, F.1    Jermiin, L.S.2    Ma, C.3    Robinson, J.4
  • 35
    • 0001499322 scopus 로고
    • A test for symmetry in contingency tables
    • 18123073
    • A test for symmetry in contingency tables. AH Bowker, J Am Stat Assoc 1948 43 572 574 18123073
    • (1948) J Am Stat Assoc , vol.43 , pp. 572-574
    • Bowker, A.H.1
  • 36
    • 0035312933 scopus 로고    scopus 로고
    • Identification of thermophilic species by the amino acid compositions deduced from their genomes
    • 11266564
    • Identification of thermophilic species by the amino acid compositions deduced from their genomes. DP Kreil CA Ouzounis, Nucleic Acids Res 2001 29 1608 15 11266564
    • (2001) Nucleic Acids Res , vol.29 , pp. 1608-1615
    • Kreil, D.P.1    Ouzounis, C.A.2
  • 39
    • 35748943561 scopus 로고    scopus 로고
    • On reduced amino Acid alphabets for phylogenetic inference
    • 17652333
    • On reduced amino Acid alphabets for phylogenetic inference. E Susko AJ Roger, Mol Biol Evol 2007 24 2139 50 17652333
    • (2007) Mol Biol Evol , vol.24 , pp. 2139-2150
    • Susko, E.1    Roger, A.J.2
  • 41
    • 0036623258 scopus 로고    scopus 로고
    • An approximately unbiased test of phylogenetic tree selection
    • 12079646
    • An approximately unbiased test of phylogenetic tree selection. H Shimodaira, Syst Biol 2002 51 492 508 12079646
    • (2002) Syst Biol , vol.51 , pp. 492-508
    • Shimodaira, H.1
  • 42
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: For assessing the confidence of phylogenetic tree selection
    • 11751242
    • CONSEL: for assessing the confidence of phylogenetic tree selection. H Shimodaira M Hasegawa, Bioinformatics 2001 17 1246 1247 11751242
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 43
    • 84959042115 scopus 로고    scopus 로고
    • Segmentation by maximal predictive partitioning according to composition biases
    • 2066 Gascuel O, Sagot M
    • Segmentation by maximal predictive partitioning according to composition biases. L Guéguen, Computational Biology, LNCS, 2066, Gascuel O, Sagot M, 2001 32 45
    • (2001) Computational Biology, LNCS , pp. 32-45
    • Guéguen, L.1
  • 44
    • 0018324934 scopus 로고
    • Evidence for co-transcription of the RNA polymerase genes rpoBC with a ribosomal protein gene of escherichia coli
    • 375008
    • Evidence for co-transcription of the RNA polymerase genes rpoBC with a ribosomal protein gene of escherichia coli. AJ Newman TG Linn RS Hayward, Mol Gen Genet 1979 169 195 204 375008
    • (1979) Mol Gen Genet , vol.169 , pp. 195-204
    • Newman, A.J.1    Linn, T.G.2    Hayward, R.S.3
  • 45
    • 0018004354 scopus 로고
    • Contranscription of genes for RNA polymerase subunits beta and beta' with genes for ribosomal proteins in Escherichia coli
    • Contranscription of genes for RNA polymerase subunits beta and beta' with genes for ribosomal proteins in Escherichia coli. M Yamamoto M Nomura, P Natl A Sci USA 1978 75 3891 3895
    • (1978) P Natl a Sci USa , vol.75 , pp. 3891-3895
    • Yamamoto, M.1    Nomura, M.2
  • 46
    • 2942576138 scopus 로고    scopus 로고
    • Evolution of bacterial RNA polymerase: Implications for large-scale bacterial phylogeny, domain accretion, and horizontal gene transfer
    • Evolution of bacterial RNA polymerase: implications for large-scale bacterial phylogeny, domain accretion, and horizontal gene transfer. LM Iyer EV Koonin L Aravind, Gene 2004 23 73 88
    • (2004) Gene , vol.23 , pp. 73-88
    • Iyer, L.M.1    Koonin, E.V.2    Aravind, L.3
  • 47
    • 0032830481 scopus 로고    scopus 로고
    • Evolution of aminoacyl-tRNA synthetases-analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events
    • Evolution of aminoacyl-tRNA synthetases-analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events. YI Wolf L Aravind NV Grishin EV Koonin, Gen Res 1999 9 689 710
    • (1999) Gen Res , vol.9 , pp. 689-710
    • Wolf, Y.I.1    Aravind, L.2    Grishin, N.V.3    Koonin, E.V.4
  • 49
    • 12344338577 scopus 로고    scopus 로고
    • Evolutionary relationships of Fusobacterium nucleatum based on phylogenetic analysis and comparative genomics
    • 15566569
    • Evolutionary relationships of Fusobacterium nucleatum based on phylogenetic analysis and comparative genomics. A Mira R Pushker BA Legault D Moreira F Rodríguez-Valera, BMC Evol Biol 2004 4 50 50 15566569
    • (2004) BMC Evol Biol , vol.4 , pp. 50-50
    • Mira, A.1    Pushker, R.2    Legault, B.A.3    Moreira, D.4    Rodríguez-Valera, F.5
  • 50
    • 20444410815 scopus 로고    scopus 로고
    • Stochastic models for horizontal gene transfer: Taking a random walk through tree space
    • 15781714
    • Stochastic models for horizontal gene transfer: taking a random walk through tree space. MA Suchard, Genetics 2005 170 419 31 15781714
    • (2005) Genetics , vol.170 , pp. 419-431
    • Suchard, M.A.1
  • 51
    • 34347256397 scopus 로고    scopus 로고
    • High-resolution species trees without concatenation
    • High-resolution species trees without concatenation. SV Edwards L Liu DK Pearl, P Natl A Sci USA 2007 104 5936 5941
    • (2007) P Natl a Sci USa , vol.104 , pp. 5936-5941
    • Edwards, S.V.1    Liu, L.2    Pearl, D.K.3
  • 52
    • 34548575126 scopus 로고    scopus 로고
    • Species trees from gene trees: Reconstructing bayesian posterior distributions of a species phylogeny using estimated gene tree distributions
    • 17562474
    • Species trees from gene trees: reconstructing bayesian posterior distributions of a species phylogeny using estimated gene tree distributions. L Liu DK Pearl, Syst Biol 2007 56 504 14 17562474
    • (2007) Syst Biol , vol.56 , pp. 504-514
    • Liu, L.1    Pearl, D.K.2
  • 55
    • 20744436518 scopus 로고    scopus 로고
    • Tree pattern matching in phylogenetic trees: Automatic search for orthologs or paralogs in homologous gene sequence databases
    • 15713731
    • Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases. JF Dufayard L Duret S Penel M Gouy F Rechenmann G Perrière, Bioinformatics 2005 21 2596 2603 15713731
    • (2005) Bioinformatics , vol.21 , pp. 2596-2603
    • Dufayard, J.F.1    Duret, L.2    Penel, S.3    Gouy, M.4    Rechenmann, F.5    Perrière, G.6
  • 56
    • 0037249633 scopus 로고    scopus 로고
    • The TIGRFAMs database of protein families
    • 12520025
    • The TIGRFAMs database of protein families. DH Haft JD Selengut O White, Nucleic Acids Res 2003 31 371 373 12520025
    • (2003) Nucleic Acids Res , vol.31 , pp. 371-373
    • Haft, D.H.1    Selengut, J.D.2    White, O.3
  • 61
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • 15034147
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput. RC Edgar, Nucleic Acids Res 2004 32 1792 1797 15034147
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 62
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • 3447015
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees. N Saitou M Nei, Mol Biol Evol 1987 4 406 425 3447015
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 63
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
    • 9021275
    • SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. N Galtier M Gouy C Gautier, Comput Appl Biosci 1996 12 543 548 9021275
    • (1996) Comput Appl Biosci , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 64
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • 10742046
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. J Castresana, Mol Biol Evol 2000 17 540 552 10742046
    • (2000) Mol Biol Evol , vol.17 , pp. 540-552
    • Castresana, J.1
  • 65
    • 34248188251 scopus 로고    scopus 로고
    • SCaFoS: A tool for selection, concatenation and fusion of sequences for phylogenomics
    • 17288575
    • SCaFoS: a tool for selection, concatenation and fusion of sequences for phylogenomics. B Roure N Rodriguez-Ezpeleta H Philippe, BMC Evol Biol 2007 7 Suppl 1 S2 S2 17288575
    • (2007) BMC Evol Biol , vol.7 , Issue.SUPPL. 1
    • Roure, B.1    Rodriguez-Ezpeleta, N.2    Philippe, H.3
  • 66
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • 14530136
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. S Guindon O Gascuel, Syst Biol 2003 52 696 704 14530136
    • (2003) Syst Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 67
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • The rapid generation of mutation data matrices from protein sequences. DT Jones WR Taylor JM Thornton, Comput Appli Biosci 1992 8 275 282
    • (1992) Comput Appli Biosci , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 68
    • 33745955637 scopus 로고    scopus 로고
    • Bio++: A set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics
    • 16594991
    • Bio++: a set of C++ libraries for sequence analysis, phylogenetics, molecular evolution and population genetics. J Dutheil S Gaillard E Bazin S Glemin V Ranwez N Galtier K Belkhir, BMC Bioinformatics 2006 7 188 188 16594991
    • (2006) BMC Bioinformatics , vol.7 , pp. 188-188
    • Dutheil, J.1    Gaillard, S.2    Bazin, E.3    Glemin, S.4    Ranwez, V.5    Galtier, N.6    Belkhir, K.7
  • 69
    • 33745256005 scopus 로고    scopus 로고
    • Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative
    • 16785212
    • Approximate likelihood-ratio test for branches: A fast, accurate, and powerful alternative. M Anisimova O Gascuel, Syst Biol 2006 55 539 552 16785212
    • (2006) Syst Biol , vol.55 , pp. 539-552
    • Anisimova, M.1    Gascuel, O.2
  • 70
    • 10344254308 scopus 로고    scopus 로고
    • Trichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I
    • 15577909
    • Trichomonas hydrogenosomes contain the NADH dehydrogenase module of mitochondrial complex I. I Hrdy RP Hirt P Dolezal L Bardonovφ PG Foster J Tachezy TM Embley, Nature 2004 432 618 622 15577909
    • (2004) Nature , vol.432 , pp. 618-622
    • Hrdy, I.1    Hirt, R.P.2    Dolezal, P.3    Bardonov, L.4    Foster, P.G.5    Tachezy, J.6    Embley, T.M.7
  • 71
    • 0021277009 scopus 로고
    • A new method for calculating evolutionary substitution rates
    • 6429346
    • A new method for calculating evolutionary substitution rates. C Lanave G Preparata C Saccone G Serio, J Mol Evol 1984 20 86 93 6429346
    • (1984) J Mol Evol , vol.20 , pp. 86-93
    • Lanave, C.1    Preparata, G.2    Saccone, C.3    Serio, G.4
  • 72
    • 24044463584 scopus 로고    scopus 로고
    • Sarment: Python modules for HMM analysis and partitioning of sequences
    • 15947017
    • Sarment: Python modules for HMM analysis and partitioning of sequences. L Guéguen, Bioinformatics 2005 21 3427 3428 15947017
    • (2005) Bioinformatics , vol.21 , pp. 3427-3428
    • Guéguen, L.1
  • 73
    • 14644391463 scopus 로고    scopus 로고
    • Online synonymous codon usage analyses with the ade4 and seqinR packages
    • 15374859
    • Online synonymous codon usage analyses with the ade4 and seqinR packages. D Charif J Thioulouse JR Lobry G Perrière, Bioinformatics 2005 21 545 547 15374859
    • (2005) Bioinformatics , vol.21 , pp. 545-547
    • Charif, D.1    Thioulouse, J.2    Lobry, J.R.3    Perrière, G.4


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