Distributional profiles of homologous open reading frames among bacterial phyla: Implications for vertical and lateral transmission

International Journal of Systematic and Evolutionary Microbiology

Volumn 52, Issue 3, 2002, Pages 777-787

  Ragan, Mark A ^a   Charlebois, Robert L ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

Comparative genomics; Genome evolution; Horizontal gene transfer; Lateral gene transfer

Indexed keywords

ARCHAEBACTERIUM; ARTICLE; BACTERIAL GENOME; CONTROLLED STUDY; EUKARYOTE; GENE SEQUENCE; GENE TRANSFER; GENOME SIZE; GRAM NEGATIVE BACTERIUM; MOLECULAR EVOLUTION; MOLECULAR RECOGNITION; NONHUMAN; OPEN READING FRAME; PARSIMONY ANALYSIS; PHYLOGENETIC TREE; PHYLUM; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; VERTICAL TRANSMISSION; BACTERIAL GENE; BACTERIUM; BIOLOGY; CLASSIFICATION; GENETICS; GENOMICS; HORIZONTAL GENE TRANSFER; METHODOLOGY;

BACTERIA; COMPUTATIONAL BIOLOGY; EVOLUTION, MOLECULAR; GENE TRANSFER, HORIZONTAL; GENES, BACTERIAL; GENOME, BACTERIAL; GENOMICS; OPEN READING FRAMES;

EID: 0035989433     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02026-0     Document Type: Article

References (39)

1. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
2. Insights into the evolutionary process of genome degradation
3. Reductive evolution of resident genomes
4. Origins of mitochondria and hydrogenosomes
5. Evidence for massive gene exchange between archaeal and bacterial hyperthermophiles
6. Reply [to Kyrpides & Olsen, 1999]
7. Archaea and the prokaryote-to-eukaryote transition
8. Concordance analysis of microbial genomes
9. Deduced genome trees using a filter to eliminate phylogenetically discordant sequences and a distance matrix based on mean normalized BLASTP scores
10. Phylogenetic classification and the universal tree
11. Archaeal genomics: Do archaea have a mixed heritage?
12. Plastid evolution: Origins, diversity, trends
13. Whole genome-based phylogenetic analysis of free-living microorganisms
14. Constructing multigenome views of whole microbial genomes
15. Microbial genescapes: Phyletic and functional patterns of ORF distribution among prokaryotes
16. Evolution of organellar genomes
17. Mitochondrial evolution
18. Horizontal gene transfer among genomes: The complexity hypothesis
19. Codon usages in different gene classes of the Escherichia coli genome
20. Comparative DNA analysis across diverse genomes
21. Comparison of archaeal and bacterial genomes: Computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea
22. Archaeal and bacterial hyperthermophiles: Horizontal gene exchange or common ancestry?
23. Amelioration of bacterial genomes: Rates of change and exchange
24. Molecular archaeology of the Escherichia coli genome
25. Genomic flux: Genome evolution by gene loss and acquisition
26. Thermotoga heats up lateral gene transfer
27. Comparative genomics of the Archaea (Euryarchaeota): Evolution of conserved protein families, the stable core, and the variable shell
28. Detecting alien genes in bacterial genomes
29. A minimal gene set for cellular life derived by comparison of complete bacterial genomes
30. Evidence for lateral gene transfer between Archaea and Bacteria from genome sequence of Thermotoga maritima
31. Lateral gene transfer and the nature of bacterial innovation
32. Microbial genescapes: A prokaryotic view of the yeast genome
33. Genome phylogeny based on gene content
34. Bacterial population genetics, evolution and epidemiology
35. Horizontal gene transfer: Evidence and possible consequences
36. A genomic perspective on protein families
37. Structural analysis of DNA sequence: Evidence for lateral gene transfer in Thermotoga maritima