메뉴 건너뛰기




Volumn 19, Issue 4, 2009, Pages 339-345

Monitoring bacterial population dynamics using real-time PCR during the bioremediation of crude-oil-contaminated Soil

Author keywords

Bioaugmentation; Crude oil; Nocardia sp; Real time PCR; Total petroleum hydrocarbon

Indexed keywords

ALKANE MONOOXYGENASE; BACTERIAL PROTEIN; CATECHOL 2,3 DIOXYGENASE; PETROLEUM; RNA 16S; UNCLASSIFIED DRUG;

EID: 67649379043     PISSN: 10177825     EISSN: 17388872     Source Type: Journal    
DOI: 10.4014/jmb.0807.423     Document Type: Article
Times cited : (28)

References (26)
  • 1
    • 0006073601 scopus 로고
    • Degradation of PAHs in soil by indigenous and inoculated bacteria
    • R. E. Hinchee, J. Fredrickson, and B. C. Alleman eds, Battelle Press, Columbus, OH
    • Aamand, J. G., G. Bruntse, M. Jepsen, C. Jorgensen, and B. K. Jensen. 1995. Degradation of PAHs in soil by indigenous and inoculated bacteria, pp. 121-127. In R. E. Hinchee, J. Fredrickson, and B. C. Alleman (eds). Bioaugmentation for Site Remediation Battelle Press, Columbus, OH.
    • (1995) Bioaugmentation for Site Remediation , pp. 121-127
    • Aamand, J.G.1    Bruntse, G.2    Jepsen, M.3    Jorgensen, C.4    Jensen, B.K.5
  • 2
    • 0034548825 scopus 로고    scopus 로고
    • Detection of genes for alkane and naphthalene catabolism in Rhodococcus sp. strain 1BN
    • Andreoni, V., S. Bernasconi, M. Colombo, J. B. van Beilen, and L. Cavalca. 2000. Detection of genes for alkane and naphthalene catabolism in Rhodococcus sp. strain 1BN. Environ. Microbiol. 2: 572-577.
    • (2000) Environ. Microbiol , vol.2 , pp. 572-577
    • Andreoni, V.1    Bernasconi, S.2    Colombo, M.3    van Beilen, J.B.4    Cavalca, L.5
  • 3
    • 1842785589 scopus 로고    scopus 로고
    • Detection of Nocardia sp. H17-1 by PCR during bioremediation of crude oil-contaminated soil
    • Baek, K. H., Y. K. Lee, I. S. Lee, H. M. Oh, B. D. Yoon, and H. S. Kim. 2004. Detection of Nocardia sp. H17-1 by PCR during bioremediation of crude oil-contaminated soil. Kor. J. Microbiol. Biotechnol. 32: 91-95.
    • (2004) Kor. J. Microbiol. Biotechnol , vol.32 , pp. 91-95
    • Baek, K.H.1    Lee, Y.K.2    Lee, I.S.3    Oh, H.M.4    Yoon, B.D.5    Kim, H.S.6
  • 5
    • 33750015060 scopus 로고    scopus 로고
    • Biodegradation of aliphatic and aromatic hydrocarbons by Nocardia sp. H17-1
    • Baek, K. H., B. D. Yoon, I. S. Lee, H. M. Oh, and H. S. Kim. 2006. Biodegradation of aliphatic and aromatic hydrocarbons by Nocardia sp. H17-1. Geomicrobiol. J. 23: 253-259.
    • (2006) Geomicrobiol. J , vol.23 , pp. 253-259
    • Baek, K.H.1    Yoon, B.D.2    Lee, I.S.3    Oh, H.M.4    Kim, H.S.5
  • 6
    • 0037641131 scopus 로고    scopus 로고
    • Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR
    • Baldwin, B., C. H. Nakatsu, and L. Nies. 2003. Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR. Appl. Environ. Microbiol. 69: 3350-3358.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 3350-3358
    • Baldwin, B.1    Nakatsu, C.H.2    Nies, L.3
  • 7
    • 0037104964 scopus 로고    scopus 로고
    • A real-time polymerase chain reaction method for monitoring anaerobic hydrocarbon-degrading bacteria based on a catabolic gene
    • Beller, H. R., S. T. Kane, T. C. Legler, and P. J. Alvarez. 2002. A real-time polymerase chain reaction method for monitoring anaerobic hydrocarbon-degrading bacteria based on a catabolic gene. Environ. Sci. Technol. 36: 3977-3984.
    • (2002) Environ. Sci. Technol , vol.36 , pp. 3977-3984
    • Beller, H.R.1    Kane, S.T.2    Legler, T.C.3    Alvarez, P.J.4
  • 8
    • 34547674725 scopus 로고    scopus 로고
    • Comparative quantitiative prevalence of Mycobacteria and functionally abundant nidA, nahAc, and nagAc dioxygenase genes in coal tar contaminated sediments
    • Debruyn, J. M., C. S. Chewning, and G. S. Sayler. 2007. Comparative quantitiative prevalence of Mycobacteria and functionally abundant nidA, nahAc, and nagAc dioxygenase genes in coal tar contaminated sediments. Environ. Sci. Technol. 41: 5426-5432.
    • (2007) Environ. Sci. Technol , vol.41 , pp. 5426-5432
    • Debruyn, J.M.1    Chewning, C.S.2    Sayler, G.S.3
  • 9
    • 3242764705 scopus 로고    scopus 로고
    • Abundance of dioxygenase genes similar to Ralstonia sp. strain U2 nagAc is correlated with naphthalene concentrations in coal tar-contaminated freshwater sediments
    • Dionisi, H. M., C. S. Chewning, K. H. Morgan, F. Menn, J. P. Easter, and G. S. Sayler. 2004. Abundance of dioxygenase genes similar to Ralstonia sp. strain U2 nagAc is correlated with naphthalene concentrations in coal tar-contaminated freshwater sediments. Appl. Environ. Microbiol. 70: 3988-3995.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 3988-3995
    • Dionisi, H.M.1    Chewning, C.S.2    Morgan, K.H.3    Menn, F.4    Easter, J.P.5    Sayler, G.S.6
  • 10
    • 20444439954 scopus 로고    scopus 로고
    • Is bioaugmentation a feasible strategy for pollutant removal and site remediation?
    • Fantrossi, S. E. and S. Agathos. 2005. Is bioaugmentation a feasible strategy for pollutant removal and site remediation? Curr. Opin. Microbiol. 8: 268-275.
    • (2005) Curr. Opin. Microbiol , vol.8 , pp. 268-275
    • Fantrossi, S.E.1    Agathos, S.2
  • 11
    • 0022142306 scopus 로고
    • Reasons for possible failure of inoculation to enhance biodegradation
    • Goldstein, R. M., L. M. Mallory, and M. Alexander. 1985. Reasons for possible failure of inoculation to enhance biodegradation. Appl. Environ. Microbiol. 50: 977-983.
    • (1985) Appl. Environ. Microbiol , vol.50 , pp. 977-983
    • Goldstein, R.M.1    Mallory, L.M.2    Alexander, M.3
  • 13
    • 28444466634 scopus 로고    scopus 로고
    • Assessing the role of alkane hydroxylase genotypes in environmental samples by competitive PCR
    • Heiss-Blanquet, S., Y. Benoit, C. Marechaux, and F. Monot. 2005. Assessing the role of alkane hydroxylase genotypes in environmental samples by competitive PCR. J. Appl. Microbiol. 99: 1392-1403.
    • (2005) J. Appl. Microbiol , vol.99 , pp. 1392-1403
    • Heiss-Blanquet, S.1    Benoit, Y.2    Marechaux, C.3    Monot, F.4
  • 14
    • 0034019871 scopus 로고    scopus 로고
    • Quantification of phnAc and nahAc in contaminated New Zealand soils by competitive PCR
    • Laurie, A. D. and G. Lloyd-Jones. 2000. Quantification of phnAc and nahAc in contaminated New Zealand soils by competitive PCR. Appl. Environ. Microbiol. 66: 1814-1817.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 1814-1817
    • Laurie, A.D.1    Lloyd-Jones, G.2
  • 15
    • 13544254298 scopus 로고    scopus 로고
    • Emergence of competitive dominant ammonia-oxidizing bacterial populations in a full-scale industrial wastewater treatment plant
    • Layton, A. C., H. M. Dionisi, H. W. Kuo, K. G. Robinson, V. M. Garrett, A. Meyers, and G. S. Salyer. 2005. Emergence of competitive dominant ammonia-oxidizing bacterial populations in a full-scale industrial wastewater treatment plant. Appl. Environ. Microbiol. 71: 1105-1108.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 1105-1108
    • Layton, A.C.1    Dionisi, H.M.2    Kuo, H.W.3    Robinson, K.G.4    Garrett, V.M.5    Meyers, A.6    Salyer, G.S.7
  • 17
    • 0033981078 scopus 로고    scopus 로고
    • Development of catechol 2,3-dioxygenase-specific primers for monitoring bioremediation by competitive quantitative PCR
    • Mesarch, M. B., C. H. Nakatsu, L. Nies. 2000. Development of catechol 2,3-dioxygenase-specific primers for monitoring bioremediation by competitive quantitative PCR. Appl. Environ. Microbiol. 66: 678-683.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 678-683
    • Mesarch, M.B.1    Nakatsu, C.H.2    Nies, L.3
  • 18
    • 33845383312 scopus 로고    scopus 로고
    • A targeted real-time PCR assay for studying naphthalene degradation in the environment
    • Nyssönen, M., R. Piskonen, and M. Itävaara. 2006. A targeted real-time PCR assay for studying naphthalene degradation in the environment. Microb. Ecol. 52: 533-543.
    • (2006) Microb. Ecol , vol.52 , pp. 533-543
    • Nyssönen, M.1    Piskonen, R.2    Itävaara, M.3
  • 19
    • 0038254664 scopus 로고
    • Microbial inoculants and fertilization for bioremediation of oil in wetlands
    • R. E. Hinchee, J. Fredrickson, and B. C. Alleman, eds, Battelle Press, Columbus, OH
    • Nerella, S., A. L. Wright, and R. W. Weaver. 1995. Microbial inoculants and fertilization for bioremediation of oil in wetlands, pp. 31-38. In R. E. Hinchee, J. Fredrickson, and B. C. Alleman, (eds). Bioaugmentation for Site Remediation Battelle Press, Columbus, OH.
    • (1995) Bioaugmentation for Site Remediation , pp. 31-38
    • Nerella, S.1    Wright, A.L.2    Weaver, R.W.3
  • 20
    • 33845440338 scopus 로고    scopus 로고
    • Using real-time PCR to assess changes in the hydrocarbon-degrading microbial community in the Antarctic soil during bioremediation
    • Powell, S. M., S. H. Ferguson, J. P. Bowman, and I. Snape. 2006. Using real-time PCR to assess changes in the hydrocarbon-degrading microbial community in the Antarctic soil during bioremediation. Microb. Ecol. 52: 523-532.
    • (2006) Microb. Ecol , vol.52 , pp. 523-532
    • Powell, S.M.1    Ferguson, S.H.2    Bowman, J.P.3    Snape, I.4
  • 21
    • 3242784271 scopus 로고    scopus 로고
    • Detection and quantification of gene expression in environmental bacteriology
    • Sharkey, F. H., I. M. Banat, and R. Marchant. 2004. Detection and quantification of gene expression in environmental bacteriology. Appl. Environ. Microbiol. 70: 3795-3806.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 3795-3806
    • Sharkey, F.H.1    Banat, I.M.2    Marchant, R.3
  • 22
    • 0033171433 scopus 로고    scopus 로고
    • Molecular screening for alkane hydroxylase genes in Gram-negative and Gram-positive strains
    • Smith, C. J., D. B. Nedwell, L. F. Dong, and A. M. Osborn. 1999. Molecular screening for alkane hydroxylase genes in Gram-negative and Gram-positive strains. Environ. Microbiol. 1: 307-317.
    • (1999) Environ. Microbiol , vol.1 , pp. 307-317
    • Smith, C.J.1    Nedwell, D.B.2    Dong, L.F.3    Osborn, A.M.4
  • 23
    • 0034658645 scopus 로고    scopus 로고
    • Stapleton, R. D., G. S. Sayler, J. K. Boggs, E. L. Libelo, T. Stauffer, and W. G.. Macintyre. 2000. Changes in subsurface catabolic gene frequencies during natural attenuation of petroleum hydrocarbons. Environ. Sci. Technol. 34: 1991-1999.
    • Stapleton, R. D., G. S. Sayler, J. K. Boggs, E. L. Libelo, T. Stauffer, and W. G.. Macintyre. 2000. Changes in subsurface catabolic gene frequencies during natural attenuation of petroleum hydrocarbons. Environ. Sci. Technol. 34: 1991-1999.
  • 24
    • 0038143253 scopus 로고    scopus 로고
    • Molecular and physiological approaches to understand of the ecology of pollutant degradation
    • Watanabe, K. and N. Hamamura. 2003. Molecular and physiological approaches to understand of the ecology of pollutant degradation. Curr. Opin. Biotechnol. 14: 289-295.
    • (2003) Curr. Opin. Biotechnol , vol.14 , pp. 289-295
    • Watanabe, K.1    Hamamura, N.2
  • 25
    • 0037209727 scopus 로고    scopus 로고
    • Recent developments in molecular techniques for identification and monitoring of xenobiotic-degrading bacteria and their catabolic genes in bioremediation
    • Widada, J., H. Nojiri, and T. Omori. 2002. Recent developments in molecular techniques for identification and monitoring of xenobiotic-degrading bacteria and their catabolic genes in bioremediation. Appl. Microbiol. Environ. 60: 45-59.
    • (2002) Appl. Microbiol. Environ , vol.60 , pp. 45-59
    • Widada, J.1    Nojiri, H.2    Omori, T.3
  • 26
    • 33644776725 scopus 로고    scopus 로고
    • Amplification of real-time polymerase chain reaction for quantification of microorganisms in environmental samples
    • Zhang, T. and H. H. P. Fang. 2006. Amplification of real-time polymerase chain reaction for quantification of microorganisms in environmental samples. Appl. Microbiol. Biotechnol. 70: 281-289.
    • (2006) Appl. Microbiol. Biotechnol , vol.70 , pp. 281-289
    • Zhang, T.1    Fang, H.H.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.