-
1
-
-
33748159867
-
Effect of SWI/SNF chromatin remodeling complex on HIV-1 Tat activated transcription
-
Agbottah E, Deng L, Dannenberg LO, Pumfery A, Kashanchi F (2006) Effect of SWI/SNF chromatin remodeling complex on HIV-1 Tat activated transcription. Retrovirology 3:48
-
(2006)
Retrovirology
, vol.3
, pp. 48
-
-
Agbottah, E.1
Deng, L.2
Dannenberg, L.O.3
Pumfery, A.4
Kashanchi, F.5
-
2
-
-
77956621342
-
Importin alpha3 interacts with HIV-1 integrase and contributes to HIV-1 nuclear import and replication
-
Ao Z, Danappa Jayappa K, Wang B et al (2010) Importin alpha3 interacts with HIV-1 integrase and contributes to HIV-1 nuclear import and replication. J Virol 84:8650-8663
-
(2010)
J Virol
, vol.84
, pp. 8650-8663
-
-
Ao, Z.1
Danappa Jayappa, K.2
Wang, B.3
-
3
-
-
79959876496
-
The molecular biology of human herpesvirus-6 latency and telomere integration
-
Arbuckle JH, Medveczky PG (2011) The molecular biology of human herpesvirus-6 latency and telomere integration. Microbes Infect 13:731-741
-
(2011)
Microbes Infect
, vol.13
, pp. 731-741
-
-
Arbuckle, J.H.1
Medveczky, P.G.2
-
4
-
-
77950402845
-
The latent human herpesvirus-6A genome specifically integrates in telomeres of human chromosomes in vivo and in vitro
-
Arbuckle JH, Medveczky MM, Luka J et al (2010) The latent human herpesvirus-6A genome specifically integrates in telomeres of human chromosomes in vivo and in vitro . Proc Natl Acad Sci USA 107:5563-5568
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 5563-5568
-
-
Arbuckle, J.H.1
Medveczky, M.M.2
Luka, J.3
-
6
-
-
33646791548
-
Kaposi's sarcomaassociated herpesvirus LANA hitches a ride on the chromosome
-
Barbera AJ, Chodaparambil JV, Kelley-Clarke B, Luger K, Kaye KM (2006) Kaposi's sarcomaassociated herpesvirus LANA hitches a ride on the chromosome. Cell Cycle 5:1048-1052
-
(2006)
Cell Cycle
, vol.5
, pp. 1048-1052
-
-
Barbera, A.J.1
Chodaparambil, J.V.2
Kelley-Clarke, B.3
Luger, K.4
Kaye, K.M.5
-
7
-
-
67349149409
-
In vivo biotinylation and capture of HIV-1 matrix and integrase proteins
-
Belshan M, Schweitzer CJ, Donnellan MR, Lu R, Engelman A (2009) In vivo biotinylation and capture of HIV-1 matrix and integrase proteins. J Virol Methods 159:178-184
-
(2009)
J Virol Methods
, vol.159
, pp. 178-184
-
-
Belshan, M.1
Schweitzer, C.J.2
Donnellan, M.R.3
Lu, R.4
Engelman, A.5
-
8
-
-
67349245812
-
Molecular interactions between HIV-1 integrase and the two viral DNA ends within the synaptic complex that mediates concerted integration
-
Bera S, Pandey KK, Vora AC, Grandgenett DP (2009) Molecular interactions between HIV-1 integrase and the two viral DNA ends within the synaptic complex that mediates concerted integration. J Mol Biol 389:183-198
-
(2009)
J Mol Biol
, vol.389
, pp. 183-198
-
-
Bera, S.1
Pandey, K.K.2
Vora, A.C.3
Grandgenett, D.P.4
-
9
-
-
0242300065
-
Genomewide screening for fusogenic human endogenous retrovirus envelopes identifies syncytin 2, a gene conserved on primate evolution
-
Blaise S, de Parseval N, Benit L, Heidmann T (2003) Genomewide screening for fusogenic human endogenous retrovirus envelopes identifies syncytin 2, a gene conserved on primate evolution. Proc Natl Acad Sci USA 100:13013-13018
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 13013-13018
-
-
Blaise, S.1
De Parseval, N.2
Benit, L.3
Heidmann, T.4
-
10
-
-
70049090006
-
CpG methylation controls reactivation of HIV from latency
-
Blazkova J, Trejbalova K, Gondois-Rey F et al (2009) CpG methylation controls reactivation of HIV from latency. PLoS Pathog 5:e1000554
-
(2009)
PLoS Pathog
, vol.5
, pp. e1000554
-
-
Blazkova, J.1
Trejbalova, K.2
Gondois-Rey, F.3
-
11
-
-
61849143903
-
Integration target site selection by a resurrected human endogenous retrovirus
-
Brady T, Lee YN, Ronen K et al (2009) Integration target site selection by a resurrected human endogenous retrovirus. Genes Dev 23:633-642
-
(2009)
Genes Dev
, vol.23
, pp. 633-642
-
-
Brady, T.1
Lee, Y.N.2
Ronen, K.3
-
12
-
-
79959469934
-
A method to sequence and quantify DNA integration for monitoring outcome in gene therapy
-
Brady T, Roth SL, Malani N et al (2011) A method to sequence and quantify DNA integration for monitoring outcome in gene therapy. Nucleic Acids Res 39:e72
-
(2011)
Nucleic Acids Res
, vol.39
, pp. e72
-
-
Brady, T.1
Roth, S.L.2
Malani, N.3
-
13
-
-
0032853990
-
Rep-mediated nicking of the adeno-associated virus origin requires two biochemical activities, DNA helicase activity and transesterification
-
Brister JR, Muzyczka N (1999) Rep-mediated nicking of the adeno-associated virus origin requires two biochemical activities, DNA helicase activity and transesterification. J Virol 73:9325-9336
-
(1999)
J Virol
, vol.73
, pp. 9325-9336
-
-
Brister, J.R.1
Muzyczka, N.2
-
14
-
-
28144462457
-
Genome-wide analysis of retroviral DNA integration
-
Bushman F, Lewinski M, CiuffiA et al (2005) Genome-wide analysis of retroviral DNA integration. Nat Rev Microbiol 3:848-858
-
(2005)
Nat Rev Microbiol
, vol.3
, pp. 848-858
-
-
Bushman, F.1
Lewinski, M.2
Ciuffi, A.3
-
15
-
-
33846049539
-
Identification of the LEDGF/p75 binding site in HIV-1 integrase
-
Busschots K, Voet A, De Maeyer M et al (2007) Identification of the LEDGF/p75 binding site in HIV-1 integrase. J Mol Biol 365:1480-1492
-
(2007)
J Mol Biol
, vol.365
, pp. 1480-1492
-
-
Busschots, K.1
Voet, A.2
De Maeyer, M.3
-
16
-
-
0034696341
-
MMTV-induced mammary tumorigenesis: Gene discovery, progression to malignancy and cellular pathways
-
Callahan R, Smith GH (2000) MMTV-induced mammary tumorigenesis: gene discovery, progression to malignancy and cellular pathways. Oncogene 19:992-1001
-
(2000)
Oncogene
, vol.19
, pp. 992-1001
-
-
Callahan, R.1
Smith, G.H.2
-
17
-
-
50849124804
-
Common integration sites for MMTV in viral induced mouse mammary tumors
-
Callahan R, Smith GH (2008) Common integration sites for MMTV in viral induced mouse mammary tumors. J Mammary Gland Biol Neoplasia 13:309-321
-
(2008)
J Mammary Gland Biol Neoplasia
, vol.13
, pp. 309-321
-
-
Callahan, R.1
Smith, G.H.2
-
18
-
-
0034724857
-
Gene therapy of human severe combined immunodeficiency (SCID)-X1 disease
-
Cavazzana-Calvo M, Hacein-Bey S, de Saint BG et al (2000) Gene therapy of human severe combined immunodeficiency (SCID)-X1 disease. Science 288:669-672
-
(2000)
Science
, vol.288
, pp. 669-672
-
-
Cavazzana-Calvo, M.1
Hacein-Bey, S.2
De Saint, B.G.3
-
19
-
-
0034622018
-
Hepatitis B virus-related insertional mutagenesis implicates SERCA1 gene in the control of apoptosis
-
Chami M, Gozuacik D, Saigo K et al (2000) Hepatitis B virus-related insertional mutagenesis implicates SERCA1 gene in the control of apoptosis. Oncogene 19:2877-2886
-
(2000)
Oncogene
, vol.19
, pp. 2877-2886
-
-
Chami, M.1
Gozuacik, D.2
Saigo, K.3
-
20
-
-
33846652601
-
LEDGF/p75 interacts with divergent lentiviral integrases and modulates their enzymatic activity in vitro
-
Cherepanov P (2007) LEDGF/p75 interacts with divergent lentiviral integrases and modulates their enzymatic activity in vitro . Nucleic Acids Res 35:113-124
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 113-124
-
-
Cherepanov, P.1
-
21
-
-
28444445583
-
Structural basis for the recognition between HIV-1 integrase and transcriptional coactivator p75
-
Cherepanov P, Ambrosio AL, Rahman S, Ellenberger T, Engelman A (2005a) Structural basis for the recognition between HIV-1 integrase and transcriptional coactivator p75. Proc Natl Acad Sci USA 102:17308-17313
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 17308-17313
-
-
Cherepanov, P.1
Ambrosio, A.L.2
Rahman, S.3
Ellenberger, T.4
Engelman, A.5
-
22
-
-
22444437424
-
Solution structure of the HIV-1 integrase-binding domain in LEDGF/p75
-
Cherepanov P, Sun ZY, Rahman S, Maertens G, Wagner G, Engelman A (2005b) Solution structure of the HIV-1 integrase-binding domain in LEDGF/p75. Nat Struct Mol Biol 12:526-532
-
(2005)
Nat Struct Mol Biol
, vol.12
, pp. 526-532
-
-
Cherepanov, P.1
Sun, Z.Y.2
Rahman, S.3
Maertens, G.4
Wagner, G.5
Engelman, A.6
-
23
-
-
79953124784
-
Structural insights into the retroviral DNA integration apparatus
-
Cherepanov P, Maertens GN, Hare S (2011) Structural insights into the retroviral DNA integration apparatus. Curr Opin Struct Biol 21:249-256
-
(2011)
Curr Opin Struct Biol
, vol.21
, pp. 249-256
-
-
Cherepanov, P.1
Maertens, G.N.2
Hare, S.3
-
24
-
-
68349139711
-
HIV reservoir size and persistence are driven by T cell survival and homeostatic proliferation
-
Chomont N, El-Far M, Ancuta P et al (2009) HIV reservoir size and persistence are driven by T cell survival and homeostatic proliferation. Nat Med 15:893-900
-
(2009)
Nat Med
, vol.15
, pp. 893-900
-
-
Chomont, N.1
El-Far, M.2
Ancuta, P.3
-
25
-
-
49649105669
-
Transportin-SR2 imports HIV into the nucleus
-
Christ F, Thys W, De Rijck J et al (2008) Transportin-SR2 imports HIV into the nucleus. Curr Biol 18:1192-1202
-
(2008)
Curr Biol
, vol.18
, pp. 1192-1202
-
-
Christ, F.1
Thys, W.2
De Rijck, J.3
-
26
-
-
0028792184
-
In vivo fate of HIV-1-infected T cells: Quantitative analysis of the transition to stable latency
-
Chun TW, Finzi D, Margolick J, Chadwick K, Schwartz D, Siliciano RF (1995) In vivo fate of HIV-1-infected T cells: quantitative analysis of the transition to stable latency. Nat Med 1:1284-1290
-
(1995)
Nat Med
, vol.1
, pp. 1284-1290
-
-
Chun, T.W.1
Finzi, D.2
Margolick, J.3
Chadwick, K.4
Schwartz, D.5
Siliciano, R.F.6
-
27
-
-
0030913366
-
Quantification of latent tissue reservoirs and total body viral load in HIV-1 infection
-
Chun TW, Carruth L, Finzi D et al (1997a) Quantification of latent tissue reservoirs and total body viral load in HIV-1 infection. Nature 387:183-188
-
(1997)
Nature
, vol.387
, pp. 183-188
-
-
Chun, T.W.1
Carruth, L.2
Finzi, D.3
-
28
-
-
0030659177
-
Presence of an inducible HIV-1 latent reservoir during highly active antiretroviral therapy
-
Chun TW, Stuyver L, Mizell SB et al (1997b) Presence of an inducible HIV-1 latent reservoir during highly active antiretroviral therapy. Proc Natl Acad Sci USA 94:13193-13197
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 13193-13197
-
-
Chun, T.W.1
Stuyver, L.2
Mizell, S.B.3
-
29
-
-
33745745419
-
Retroviral DNA integration: HIV and the role of LEDGF/p75
-
CiuffiA, Bushman FD (2006) Retroviral DNA integration: HIV and the role of LEDGF/p75. Trends Genet 22:388-395
-
(2006)
Trends Genet
, vol.22
, pp. 388-395
-
-
Ciuffi, A.1
Bushman, F.D.2
-
30
-
-
28644443483
-
A role for LEDGF/p75 in targeting HIV DNA integration
-
CiuffiA, Llano M, Poeschla E et al (2005) A role for LEDGF/p75 in targeting HIV DNA integration. Nat Med 11:1287-1289
-
(2005)
Nat Med
, vol.11
, pp. 1287-1289
-
-
Ciuffi, A.1
Llano, M.2
Poeschla, E.3
-
31
-
-
33750626259
-
Modulating target site selection during human immunodeficiency virus DNA integration in vitro with an engineered tethering factor
-
CiuffiA, Diamond TL, Hwang Y, Marshall HM, Bushman FD (2006) Modulating target site selection during human immunodeficiency virus DNA integration in vitro with an engineered tethering factor. Hum Gene Ther 17:960-967
-
(2006)
Hum Gene Ther
, vol.17
, pp. 960-967
-
-
Ciuffi, A.1
Diamond, T.L.2
Hwang, Y.3
Marshall, H.M.4
Bushman, F.D.5
-
32
-
-
70350148394
-
Understanding HIV-1 latency provides clues for the eradication of long-term reservoirs
-
Coiras M, Lopez-Huertas MR, Perez-Olmeda M, Alcami J (2009) Understanding HIV-1 latency provides clues for the eradication of long-term reservoirs. Nat Rev Microbiol 7:798-812
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 798-812
-
-
Coiras, M.1
Lopez-Huertas, M.R.2
Perez-Olmeda, M.3
Alcami, J.4
-
33
-
-
0033597450
-
A role for DNA-PK in retroviral DNA integration
-
Daniel R, Katz RA, Skalka AM (1999) A role for DNA-PK in retroviral DNA integration. Science 284:644-647
-
(1999)
Science
, vol.284
, pp. 644-647
-
-
Daniel, R.1
Katz, R.A.2
Skalka, A.M.3
-
34
-
-
37549013109
-
Efficient and specific internal cleavage of a retroviral palindromic DNA sequence by tetrameric HIV-1 integrase
-
Delelis O, Parissi V, Leh H et al (2007) Efficient and specific internal cleavage of a retroviral palindromic DNA sequence by tetrameric HIV-1 integrase. PLoS One 2:e608
-
(2007)
PLoS One
, vol.2
, pp. e608
-
-
Delelis, O.1
Parissi, V.2
Leh, H.3
-
36
-
-
34249952425
-
Human T-cell leukemia virus type 1 integration target sites in the human genome: Comparison with those of other retroviruses
-
Derse D, Crise B, Li Y et al (2007) Human T-cell leukemia virus type 1 integration target sites in the human genome: comparison with those of other retroviruses. J Virol 81:6731-6741
-
(2007)
J Virol
, vol.81
, pp. 6731-6741
-
-
Derse, D.1
Crise, B.2
Li, Y.3
-
37
-
-
79551637698
-
Retroviral integration site selection
-
Desfarges S, CiuffiA (2010) Retroviral integration site selection. Viruses 2:111-130
-
(2010)
Viruses
, vol.2
, pp. 111-130
-
-
Desfarges, S.1
Ciuffi, A.2
-
38
-
-
0021080878
-
Proof of recombination between viral and cellular genomes in human KB cells productively infected by adenovirus type 12: Structure of the junction site in a symmetric recombinant (SYREC)
-
Deuring R, Doerfler W (1983) Proof of recombination between viral and cellular genomes in human KB cells productively infected by adenovirus type 12: structure of the junction site in a symmetric recombinant (SYREC). Gene 26:283-289
-
(1983)
Gene
, vol.26
, pp. 283-289
-
-
Deuring, R.1
Doerfler, W.2
-
39
-
-
0019569787
-
An unusual symmetric recombinant between adenovirus type 12 DNA and human cell DNA
-
Deuring R, Klotz G, Doerfler W (1981) An unusual symmetric recombinant between adenovirus type 12 DNA and human cell DNA. Proc Natl Acad Sci USA 78:3142-3146
-
(1981)
Proc Natl Acad Sci USA
, vol.78
, pp. 3142-3146
-
-
Deuring, R.1
Klotz, G.2
Doerfler, W.3
-
40
-
-
0036208663
-
Human herpesvirus-6 rep/U94 gene product has single-stranded DNA-binding activity
-
Dhepakson P, Mori Y, Jiang YB et al (2002) Human herpesvirus-6 rep/U94 gene product has single-stranded DNA-binding activity. J Gen Virol 83:847-854
-
(2002)
J Gen Virol
, vol.83
, pp. 847-854
-
-
Dhepakson, P.1
Mori, Y.2
Jiang, Y.B.3
-
41
-
-
29744433678
-
Division of labor within human immunodeficiency virus integrase complexes: Determinants of catalysis and target DNA capture
-
Diamond TL, Bushman FD (2005) Division of labor within human immunodeficiency virus integrase complexes: determinants of catalysis and target DNA capture. J Virol 79:15376-15387
-
(2005)
J Virol
, vol.79
, pp. 15376-15387
-
-
Diamond, T.L.1
Bushman, F.D.2
-
42
-
-
63449105889
-
Epigenetic mechanisms in human adenovirus type 12 oncogenesis
-
Doerfler W (2009) Epigenetic mechanisms in human adenovirus type 12 oncogenesis. Semin Cancer Biol 19:136-143
-
(2009)
Semin Cancer Biol
, vol.19
, pp. 136-143
-
-
Doerfler, W.1
-
43
-
-
80055098422
-
Epigenetic consequences of foreign DNA insertions: De novo methylation and global alterations of methylation patterns in recipient genomes
-
Doerfler W (2011) Epigenetic consequences of foreign DNA insertions: de novo methylation and global alterations of methylation patterns in recipient genomes. Rev Med Virol 21:336-346
-
(2011)
Rev Med Virol
, vol.21
, pp. 336-346
-
-
Doerfler, W.1
-
44
-
-
84857285794
-
Impact of foreign DNA integration on tumor biology and on evolution via epigenetic alterations
-
Doerfler W (2012) Impact of foreign DNA integration on tumor biology and on evolution via epigenetic alterations. Epigenomics 4:41-49
-
(2012)
Epigenomics
, vol.4
, pp. 41-49
-
-
Doerfler, W.1
-
45
-
-
36448937162
-
Cell-to-cell fusion as a link between viruses and cancer
-
Duelli D, Lazebnik Y (2007) Cell-to-cell fusion as a link between viruses and cancer. Nat Rev Cancer 7:968-976
-
(2007)
Nat Rev Cancer
, vol.7
, pp. 968-976
-
-
Duelli, D.1
Lazebnik, Y.2
-
46
-
-
79955852358
-
The use of chromatin insulators to improve the expression and safety of integrating gene transfer vectors
-
Emery DW (2011) The use of chromatin insulators to improve the expression and safety of integrating gene transfer vectors. Hum Gene Ther 22:761-774
-
(2011)
Hum Gene Ther
, vol.22
, pp. 761-774
-
-
Emery, D.W.1
-
47
-
-
79952073408
-
Arenavirus reverse genetics: New approaches for the investigation of arenavirus biology and development of antiviral strategies
-
Emonet SE, Urata S, de la Torre JC (2011) Arenavirus reverse genetics: new approaches for the investigation of arenavirus biology and development of antiviral strategies. Virology 411:416-425
-
(2011)
Virology
, vol.411
, pp. 416-425
-
-
Emonet, S.E.1
Urata, S.2
De La Torre, J.C.3
-
48
-
-
42949114952
-
The lentiviral integrase binding protein LEDGF/p75 and HIV-1 replication
-
Engelman A, Cherepanov P (2008) The lentiviral integrase binding protein LEDGF/p75 and HIV-1 replication. PLoS Pathog 4:e1000046
-
(2008)
PLoS Pathog
, vol.4
, pp. e1000046
-
-
Engelman, A.1
Cherepanov, P.2
-
49
-
-
49749222804
-
Virus particles in cultured lymphoblasts from burkitt's lymphoma
-
Epstein MA, Achong BG, Barr YM (1964) Virus particles in cultured lymphoblasts from burkitt's lymphoma. Lancet 1:702-703
-
(1964)
Lancet
, vol.1
, pp. 702-703
-
-
Epstein, M.A.1
Achong, B.G.2
Barr, Y.M.3
-
50
-
-
0025968854
-
Determination of viral proteins present in the human immunodeficiency virus type 1 preintegration complex
-
Farnet CM, Haseltine WA (1991) Determination of viral proteins present in the human immunodeficiency virus type 1 preintegration complex. J Virol 65:1910-1915
-
(1991)
J Virol
, vol.65
, pp. 1910-1915
-
-
Farnet, C.M.1
Haseltine, W.A.2
-
51
-
-
38349112349
-
Mouse mammary tumor virus integration site selection in human and mouse genomes
-
Faschinger A, Rouault F, Sollner J et al (2008) Mouse mammary tumor virus integration site selection in human and mouse genomes. J Virol 82:1360-1367
-
(2008)
J Virol
, vol.82
, pp. 1360-1367
-
-
Faschinger, A.1
Rouault, F.2
Sollner, J.3
-
52
-
-
0035078745
-
Characterization of intracellular reverse transcription complexes of human immunodeficiency virus type 1
-
Fassati A, Goff SP (2001) Characterization of intracellular reverse transcription complexes of human immunodeficiency virus type 1. J Virol 75:3626-3635
-
(2001)
J Virol
, vol.75
, pp. 3626-3635
-
-
Fassati, A.1
Goff, S.P.2
-
53
-
-
14244264128
-
HIV-1 integrase crosslinked oligomers are active in vitro
-
Faure A, Calmels C, Desjobert C et al (2005) HIV-1 integrase crosslinked oligomers are active in vitro . Nucleic Acids Res 33:977-986
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 977-986
-
-
Faure, A.1
Calmels, C.2
Desjobert, C.3
-
54
-
-
0037871858
-
Integrations of the hepatitis B virus (HBV) and human papillomavirus (HPV) into the human telomerase reverse transcriptase (hTERT) gene in liver and cervical cancers
-
Ferber MJ, Montoya DP, Yu C et al (2003) Integrations of the hepatitis B virus (HBV) and human papillomavirus (HPV) into the human telomerase reverse transcriptase (hTERT) gene in liver and cervical cancers. Oncogene 22:3813-3820
-
(2003)
Oncogene
, vol.22
, pp. 3813-3820
-
-
Ferber, M.J.1
Montoya, D.P.2
Yu, C.3
-
55
-
-
77649259825
-
Lens epithelium-derived growth factor fusion proteins redirect HIV-1 DNA integration
-
Ferris AL, Wu X, Hughes CM et al (2010) Lens epithelium-derived growth factor fusion proteins redirect HIV-1 DNA integration. Proc Natl Acad Sci USA 107:3135-3140
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 3135-3140
-
-
Ferris, A.L.1
Wu, X.2
Hughes, C.M.3
-
56
-
-
14444273439
-
Identification of a reservoir for HIV-1 in patients on highly active antiretroviral therapy
-
Finzi D, Hermankova M, Pierson T et al (1997) Identification of a reservoir for HIV-1 in patients on highly active antiretroviral therapy. Science 278:1295-1300
-
(1997)
Science
, vol.278
, pp. 1295-1300
-
-
Finzi, D.1
Hermankova, M.2
Pierson, T.3
-
57
-
-
0032953920
-
Latent infection of CD4+ T cells provides a mechanism for lifelong persistence of HIV-1, even in patients on effective combination therapy
-
Finzi D, Blankson J, Siliciano JD et al (1999) Latent infection of CD4+ T cells provides a mechanism for lifelong persistence of HIV-1, even in patients on effective combination therapy. Nat Med 5:512-517
-
(1999)
Nat Med
, vol.5
, pp. 512-517
-
-
Finzi, D.1
Blankson, J.2
Siliciano, J.D.3
-
58
-
-
70349671762
-
Evolutionary capture of viral and plasmid DNA by yeast nuclear chromosomes
-
Frank AC, Wolfe KH (2009) Evolutionary capture of viral and plasmid DNA by yeast nuclear chromosomes. Eukaryot Cell 8:1521-1531
-
(2009)
Eukaryot Cell
, vol.8
, pp. 1521-1531
-
-
Frank, A.C.1
Wolfe, K.H.2
-
59
-
-
80053132394
-
Host factors mediating HIV-1 replication
-
Friedrich BM, Dziuba N, Li G, Endsley MA, Murray JL, Ferguson MR (2011) Host factors mediating HIV-1 replication. Virus Res 161:101-114
-
(2011)
Virus Res
, vol.161
, pp. 101-114
-
-
Friedrich, B.M.1
Dziuba, N.2
Li, G.3
Endsley, M.A.4
Murray, J.L.5
Ferguson, M.R.6
-
60
-
-
33745888072
-
Epstein-Barr virus integrates frequently into chromosome 4q, 2q, 1q and 7q of burkitt's lymphoma cell line (raji)
-
Gao J, Luo X, Tang K, Li X, Li G (2006) Epstein-Barr virus integrates frequently into chromosome 4q, 2q, 1q and 7q of burkitt's lymphoma cell line (raji). J Virol Methods 136:193-199
-
(2006)
J Virol Methods
, vol.136
, pp. 193-199
-
-
Gao, J.1
Luo, X.2
Tang, K.3
Li, X.4
Li, G.5
-
61
-
-
58449125226
-
Recombination of retrotransposon and exogenous RNA virus results in nonretroviral cDNA integration
-
Geuking MB, Weber J, Dewannieux M et al (2009) Recombination of retrotransposon and exogenous RNA virus results in nonretroviral cDNA integration. Science 323:393-396
-
(2009)
Science
, vol.323
, pp. 393-396
-
-
Geuking, M.B.1
Weber, J.2
Dewannieux, M.3
-
62
-
-
77649250416
-
LEDGF hybrids efficiently retarget lentiviral integration into heterochromatin
-
Gijsbers R, Ronen K, Vets S et al (2010) LEDGF hybrids efficiently retarget lentiviral integration into heterochromatin. Mol Ther 18:552-560
-
(2010)
Mol Ther
, vol.18
, pp. 552-560
-
-
Gijsbers, R.1
Ronen, K.2
Vets, S.3
-
63
-
-
82355171876
-
Role of the PWWP domain of lens epithelium-derived growth factor (LEDGF)/p75 cofactor in lentiviral integration targeting
-
Gijsbers R, Vets S, De Rijck J et al (2011) Role of the PWWP domain of lens epithelium-derived growth factor (LEDGF)/p75 cofactor in lentiviral integration targeting. J Biol Chem 286: 41812-41825
-
(2011)
J Biol Chem
, vol.286
, pp. 41812-41825
-
-
Gijsbers, R.1
Vets, S.2
De Rijck, J.3
-
64
-
-
0028832045
-
Characterization of human telomeric repeat sequences from human herpesvirus 6 and relationship to replication
-
Gompels UA, Macaulay HA (1995) Characterization of human telomeric repeat sequences from human herpesvirus 6 and relationship to replication. J Gen Virol 76(Pt 2):451-458
-
(1995)
J Gen Virol
, vol.76
, pp. 451-458
-
-
Gompels, U.A.1
Macaulay, H.A.2
-
65
-
-
33747330377
-
Relationship between the oligomeric status of HIV-1 integrase on DNA and enzymatic activity
-
Guiot E, Carayon K, Delelis O et al (2006) Relationship between the oligomeric status of HIV-1 integrase on DNA and enzymatic activity. J Biol Chem 281:22707-22719
-
(2006)
J Biol Chem
, vol.281
, pp. 22707-22719
-
-
Guiot, E.1
Carayon, K.2
Delelis, O.3
-
66
-
-
0019311303
-
Epidemiology of Hodgkin's disease
-
Gutensohn N, Cole P (1980) Epidemiology of Hodgkin's disease. Semin Oncol 7:92-102
-
(1980)
Semin Oncol
, vol.7
, pp. 92-102
-
-
Gutensohn, N.1
Cole, P.2
-
67
-
-
51349090473
-
Insertional oncogenesis in 4 patients after retrovirus-mediated gene therapy of SCID-X1
-
Hacein-Bey-Abina S, Garrigue A, Wang GP et al (2008) Insertional oncogenesis in 4 patients after retrovirus-mediated gene therapy of SCID-X1. J Clin Invest 118:3132-3142
-
(2008)
J Clin Invest
, vol.118
, pp. 3132-3142
-
-
Hacein-Bey-Abina, S.1
Garrigue, A.2
Wang, G.P.3
-
68
-
-
77949365510
-
Retroviral intasome assembly and inhibition of DNA strand transfer
-
Hare S, Gupta SS, Valkov E, Engelman A, Cherepanov P (2010) Retroviral intasome assembly and inhibition of DNA strand transfer. Nature 464:232-236
-
(2010)
Nature
, vol.464
, pp. 232-236
-
-
Hare, S.1
Gupta, S.S.2
Valkov, E.3
Engelman, A.4
Cherepanov, P.5
-
69
-
-
77957323822
-
Adeno-associated virus: A key to the human genome?
-
Henckaerts E, Linden RM (2010) Adeno-associated virus: A key to the human genome? Future Virol 5:555-574
-
(2010)
Future Virol
, vol.5
, pp. 555-574
-
-
Henckaerts, E.1
Linden, R.M.2
-
70
-
-
0026638611
-
Different pathways for chromosomal integration of transfected circular pSVneo plasmids in normal and established rodent cells
-
Hoglund M, Siden T, Rohme D (1992) Different pathways for chromosomal integration of transfected circular pSVneo plasmids in normal and established rodent cells. Gene 116:215-222
-
(1992)
Gene
, vol.116
, pp. 215-222
-
-
Hoglund, M.1
Siden, T.2
Rohme, D.3
-
71
-
-
0025815415
-
The prototypical Epstein-Barr virus-transformed lymphoblastoid cell line IB4 is an unusual variant containing integrated but no episomal viral DNA
-
Hurley EA, Klaman LD, Agger S, Lawrence JB, Thorley-Lawson DA (1991) The prototypical Epstein-Barr virus-transformed lymphoblastoid cell line IB4 is an unusual variant containing integrated but no episomal viral DNA. J Virol 65:3958-3963
-
(1991)
J Virol
, vol.65
, pp. 3958-3963
-
-
Hurley, E.A.1
Klaman, L.D.2
Agger, S.3
Lawrence, J.B.4
Thorley-Lawson, D.A.5
-
72
-
-
77957687329
-
Integration preferences of wildtype AAV-2 for consensus rep-binding sites at numerous loci in the human genome
-
Huser D, Gogol-Doring A, Lutter T, Weger S, Winter K, Hammer EM, Cathomen T, Reinert K, Heilbronn R (2010) Integration preferences of wildtype AAV-2 for consensus rep-binding sites at numerous loci in the human genome. PLoS Pathog, 6, e1000985
-
(2010)
PLoS Pathog
, vol.6
, pp. e1000985
-
-
Huser, D.1
Gogol-Doring, A.2
Lutter, T.3
Weger, S.4
Winter, K.5
Hammer, E.M.6
Cathomen, T.7
Reinert, K.8
Heilbronn, R.9
-
73
-
-
65549105028
-
Piecing together the structure of retroviral integrase, an important target in AIDS therapy
-
Jaskolski M, Alexandratos JN, Bujacz G, Wlodawer A (2009) Piecing together the structure of retroviral integrase, an important target in AIDS therapy. FEBS J 276:2926-2946
-
(2009)
FEBS J
, vol.276
, pp. 2926-2946
-
-
Jaskolski, M.1
Alexandratos, J.N.2
Bujacz, G.3
Wlodawer, A.4
-
74
-
-
58149507192
-
Effects of retroviruses on host genome function
-
Jern P, Coffin JM (2008) Effects of retroviruses on host genome function. Annu Rev Genet 42: 709-732
-
(2008)
Annu Rev Genet
, vol.42
, pp. 709-732
-
-
Jern, P.1
Coffin, J.M.2
-
75
-
-
55949083820
-
HIV rebounds from latently infected cells, rather than from continuing low-level replication
-
Joos B, Fischer M, Kuster H et al (2008) HIV rebounds from latently infected cells, rather than from continuing low-level replication. Proc Natl Acad Sci USA 105:16725-16730
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 16725-16730
-
-
Joos, B.1
Fischer, M.2
Kuster, H.3
-
76
-
-
0037446948
-
HIV reproducibly establishes a latent infection after acute infection of T cells in vitro
-
Jordan A, Bisgrove D, Verdin E (2003) HIV reproducibly establishes a latent infection after acute infection of T cells in vitro . EMBO J 22:1868-1877
-
(2003)
EMBO J
, vol.22
, pp. 1868-1877
-
-
Jordan, A.1
Bisgrove, D.2
Verdin, E.3
-
77
-
-
84861309354
-
Live-cell imaging reveals multiple interactions between Epstein-Barr Nuclear Antigen 1 (EBNA-1) and cellular chromatin during interphase and mitosis
-
Jourdan N, Jobart-Malfait A, Dos Reis G, Quignon F, Piolot T, Klein C, Tramier M, Coppey M, Marechal V (2012) Live-cell imaging reveals multiple interactions between Epstein-Barr Nuclear Antigen 1 (EBNA-1) and cellular chromatin during interphase and mitosis. J Virol 86(9):5314-5329
-
(2012)
J Virol
, vol.86
, Issue.9
, pp. 5314-5329
-
-
Jourdan, N.1
Jobart-Malfait, A.2
Dos Reis, G.3
Quignon, F.4
Piolot, T.5
Klein, C.6
Tramier, M.7
Coppey, M.8
Marechal, V.9
-
78
-
-
67650925025
-
Epigenetic regulation of HIV-1 latency by cytosine methylation
-
Kauder SE, Bosque A, Lindqvist A, Planelles V, Verdin E (2009) Epigenetic regulation of HIV-1 latency by cytosine methylation. PLoS Pathog 5:e1000495
-
(2009)
PLoS Pathog
, vol.5
, pp. e1000495
-
-
Kauder, S.E.1
Bosque, A.2
Lindqvist, A.3
Planelles, V.4
Verdin, E.5
-
79
-
-
80055086269
-
Herpesvirus telomerase RNA (vTR) with a mutated template sequence abrogates herpesvirus-induced lymphomagenesis
-
Kaufer BB, Arndt S, Trapp S, Osterrieder N, Jarosinski KW (2011) Herpesvirus telomerase RNA (vTR) with a mutated template sequence abrogates herpesvirus-induced lymphomagenesis. PLoS Pathog 7:e1002333
-
(2011)
PLoS Pathog
, vol.7
, pp. e1002333
-
-
Kaufer, B.B.1
Arndt, S.2
Trapp, S.3
Osterrieder, N.4
Jarosinski, K.W.5
-
80
-
-
53749107062
-
Integration site preference of xenotropic murine leukemia virus-related virus, a new human retrovirus associated with prostate cancer
-
Kim S, Kim N, Dong B et al (2008) Integration site preference of xenotropic murine leukemia virus-related virus, a new human retrovirus associated with prostate cancer. J Virol 82: 9964-9977
-
(2008)
J Virol
, vol.82
, pp. 9964-9977
-
-
Kim, S.1
Kim, N.2
Dong, B.3
-
81
-
-
80455158293
-
Novel common integration sites targeted by mouse mammary tumor virus insertion in mammary tumors have oncogenic activity
-
Kim HH, van den Heuvel AP, Schmidt JW, Ross SR (2011) Novel common integration sites targeted by mouse mammary tumor virus insertion in mammary tumors have oncogenic activity. PLoS One 6:e27425
-
(2011)
PLoS One
, vol.6
, pp. e27425
-
-
Kim, H.H.1
Van Den Heuvel, A.P.2
Schmidt, J.W.3
Ross, S.R.4
-
83
-
-
0025865176
-
Latent human herpesvirus 6 infection of human monocytes/macrophages
-
Kondo K, Kondo T, Okuno T, Takahashi M, Yamanishi K (1991) Latent human herpesvirus 6 infection of human monocytes/macrophages. J Gen Virol 72(Pt 6):1401-1408
-
(1991)
J Gen Virol
, vol.72
, pp. 1401-1408
-
-
Kondo, K.1
Kondo, T.2
Okuno, T.3
Takahashi, M.4
Yamanishi, K.5
-
84
-
-
0036275849
-
Strong interaction between human herpesvirus 6 and peripheral blood monocytes/macrophages during acute infection
-
Kondo K, Kondo T, Shimada K, Amo K, Miyagawa H, Yamanishi K (2002) Strong interaction between human herpesvirus 6 and peripheral blood monocytes/macrophages during acute infection. J Med Virol 67:364-369
-
(2002)
J Med Virol
, vol.67
, pp. 364-369
-
-
Kondo, K.1
Kondo, T.2
Shimada, K.3
Amo, K.4
Miyagawa, H.5
Yamanishi, K.6
-
85
-
-
0025721086
-
Mapping and direct visualization of a region-specific viral DNA integration site on chromosome 19q13-qter
-
Kotin RM, Menninger JC, Ward DC, Berns KI (1991) Mapping and direct visualization of a region-specific viral DNA integration site on chromosome 19q13-qter. Genomics 10:831-834
-
(1991)
Genomics
, vol.10
, pp. 831-834
-
-
Kotin, R.M.1
Menninger, J.C.2
Ward, D.C.3
Berns, K.I.4
-
86
-
-
0033798719
-
Selective cleavage of AAVS1 substrates by the adenoassociated virus type 2 rep68 protein is dependent on topological and sequence constraints
-
Lamartina S, Ciliberto G, Toniatti C (2000) Selective cleavage of AAVS1 substrates by the adenoassociated virus type 2 rep68 protein is dependent on topological and sequence constraints. J Virol 74:8831-8842
-
(2000)
J Virol
, vol.74
, pp. 8831-8842
-
-
Lamartina, S.1
Ciliberto, G.2
Toniatti, C.3
-
87
-
-
0027327190
-
Non-random integration of Epstein-Barr virus in lymphoblastoid cell lines
-
Lestou VS, De Braekeleer M, Strehl S, Ott G, Gadner H, Ambros PF (1993) Non-random integration of Epstein-Barr virus in lymphoblastoid cell lines. Genes Chromosomes Cancer 8:38-48
-
(1993)
Genes Chromosomes Cancer
, vol.8
, pp. 38-48
-
-
Lestou, V.S.1
De Braekeleer, M.2
Strehl, S.3
Ott, G.4
Gadner, H.5
Ambros, P.F.6
-
88
-
-
77955922760
-
Transportin 3 and importin alpha are required for effective nuclear import of HIV-1 integrase in virus-infected cells
-
Levin A, Hayouka Z, Friedler A, Loyter A (2010) Transportin 3 and importin alpha are required for effective nuclear import of HIV-1 integrase in virus-infected cells. Nucleus 1:422-431
-
(2010)
Nucleus
, vol.1
, pp. 422-431
-
-
Levin, A.1
Hayouka, Z.2
Friedler, A.3
Loyter, A.4
-
89
-
-
33645864066
-
Retroviral DNA integration-mechanism and consequences
-
Lewinski MK, Bushman FD (2005) Retroviral DNA integration-mechanism and consequences. Adv Genet 55:147-181
-
(2005)
Adv Genet
, vol.55
, pp. 147-181
-
-
Lewinski, M.K.1
Bushman, F.D.2
-
90
-
-
21044451712
-
Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription
-
Lewinski MK, Bisgrove D, Shinn P et al (2005) Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription. J Virol 79:6610-6619
-
(2005)
J Virol
, vol.79
, pp. 6610-6619
-
-
Lewinski, M.K.1
Bisgrove, D.2
Shinn, P.3
-
91
-
-
33745684269
-
Retroviral DNA integration: Viral and cellular determinants of target-site selection
-
Lewinski MK, Yamashita M, Emerman M et al (2006) Retroviral DNA integration: viral and cellular determinants of target-site selection. PLoS Pathog 2:e60
-
(2006)
PLoS Pathog
, vol.2
, pp. e60
-
-
Lewinski, M.K.1
Yamashita, M.2
Emerman, M.3
-
92
-
-
0028055281
-
Passage through mitosis is required for oncoretroviruses but not for the human immunodeficiency virus
-
Lewis PF, Emerman M (1994) Passage through mitosis is required for oncoretroviruses but not for the human immunodeficiency virus. J Virol 68:510-516
-
(1994)
J Virol
, vol.68
, pp. 510-516
-
-
Lewis, P.F.1
Emerman, M.2
-
93
-
-
23844491860
-
Processing of viral DNA ends channels the HIV-1 integration reaction to concerted integration
-
Li M, Craigie R (2005) Processing of viral DNA ends channels the HIV-1 integration reaction to concerted integration. J Biol Chem 280:29334-29339
-
(2005)
J Biol Chem
, vol.280
, pp. 29334-29339
-
-
Li, M.1
Craigie, R.2
-
95
-
-
0344211405
-
The barrier-to-autointegration factor is a component of functional human immunodeficiency virus type 1 preintegration complexes
-
Lin CW, Engelman A (2003) The barrier-to-autointegration factor is a component of functional human immunodeficiency virus type 1 preintegration complexes. J Virol 77:5030-5036
-
(2003)
J Virol
, vol.77
, pp. 5030-5036
-
-
Lin, C.W.1
Engelman, A.2
-
96
-
-
78049512653
-
Widespread horizontal gene transfer from double-stranded RNA viruses to eukaryotic nuclear genomes
-
Liu H, Fu Y, Jiang D et al (2010) Widespread horizontal gene transfer from double-stranded RNA viruses to eukaryotic nuclear genomes. J Virol 84:11876-11887
-
(2010)
J Virol
, vol.84
, pp. 11876-11887
-
-
Liu, H.1
Fu, Y.2
Jiang, D.3
-
97
-
-
33750358735
-
An essential role for LEDGF/p75 in HIV integration
-
Llano M, Saenz DT, Meehan A et al (2006) An essential role for LEDGF/p75 in HIV integration. Science 314:461-464
-
(2006)
Science
, vol.314
, pp. 461-464
-
-
Llano, M.1
Saenz, D.T.2
Meehan, A.3
-
98
-
-
33746021681
-
The SWI/SNF chromatin-remodeling complex is a cofactor for Tat transactivation of the HIV promoter
-
Mahmoudi T, Parra M, Vries RG et al (2006) The SWI/SNF chromatin-remodeling complex is a cofactor for Tat transactivation of the HIV promoter. J Biol Chem 281:19960-19968
-
(2006)
J Biol Chem
, vol.281
, pp. 19960-19968
-
-
Mahmoudi, T.1
Parra, M.2
Vries, R.G.3
-
99
-
-
44349171666
-
Role of PSIP1/LEDGF/p75 in lentiviral infectivity and integration targeting
-
Marshall HM, Ronen K, Berry C et al (2007) Role of PSIP1/LEDGF/p75 in lentiviral infectivity and integration targeting. PLoS One 2:e1340
-
(2007)
PLoS One
, vol.2
, pp. e1340
-
-
Marshall, H.M.1
Ronen, K.2
Berry, C.3
-
100
-
-
77649216736
-
The latency-associated nuclear antigen interacts with MeCP2 and nucleosomes through separate domains
-
Matsumura S, Persson LM, Wong L, Wilson AC (2010) The latency-associated nuclear antigen interacts with MeCP2 and nucleosomes through separate domains. J Virol 84:2318-2330
-
(2010)
J Virol
, vol.84
, pp. 2318-2330
-
-
Matsumura, S.1
Persson, L.M.2
Wong, L.3
Wilson, A.C.4
-
101
-
-
0028290387
-
Identification of linear DNA sequences that specifically bind the adeno-associated virus Rep protein
-
McCarty DM, Pereira DJ, Zolotukhin I, Zhou X, Ryan JH, Muzyczka N (1994a) Identification of linear DNA sequences that specifically bind the adeno-associated virus Rep protein. J Virol 68:4988-4997
-
(1994)
J Virol
, vol.68
, pp. 4988-4997
-
-
McCarty, D.M.1
Pereira, D.J.2
Zolotukhin, I.3
Zhou, X.4
Ryan, J.H.5
Muzyczka, N.6
-
102
-
-
0028338651
-
Interaction of the adenoassociated virus Rep protein with a sequence within the a palindrome of the viral terminal repeat
-
McCarty DM, Ryan JH, Zolotukhin S, Zhou X, Muzyczka N (1994b) Interaction of the adenoassociated virus Rep protein with a sequence within the a palindrome of the viral terminal repeat. J Virol 68:4998-5006
-
(1994)
J Virol
, vol.68
, pp. 4998-5006
-
-
McCarty, D.M.1
Ryan, J.H.2
Zolotukhin, S.3
Zhou, X.4
Muzyczka, N.5
-
103
-
-
77949268941
-
Chromatin tethering and retroviral integration: Recent discoveries and parallels with DNA viruses
-
Meehan AM, Poeschla EM (2010) Chromatin tethering and retroviral integration: recent discoveries and parallels with DNA viruses. Biochim Biophys Acta 1799:182-191
-
(2010)
Biochim Biophys Acta
, vol.1799
, pp. 182-191
-
-
Meehan, A.M.1
Poeschla, E.M.2
-
104
-
-
70049090961
-
LEDGF/p75 proteins with alternative chromatin tethers are functional HIV-1 cofactors
-
Meehan AM, Saenz DT, Morrison JH et al (2009) LEDGF/p75 proteins with alternative chromatin tethers are functional HIV-1 cofactors. PLoS Pathog 5:e1000522
-
(2009)
PLoS Pathog
, vol.5
, pp. e1000522
-
-
Meehan, A.M.1
Saenz, D.T.2
Morrison, J.H.3
-
105
-
-
0342545919
-
Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis
-
Mi S, Lee X, Li X et al (2000) Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis. Nature 403:785-789
-
(2000)
Nature
, vol.403
, pp. 785-789
-
-
Mi, S.1
Lee, X.2
Li, X.3
-
106
-
-
0030972160
-
Human immunodeficiency virus type 1 preintegration complexes: Studies of organization and composition
-
Miller MD, Farnet CM, Bushman FD (1997) Human immunodeficiency virus type 1 preintegration complexes: studies of organization and composition. J Virol 71:5382-5390
-
(1997)
J Virol
, vol.71
, pp. 5382-5390
-
-
Miller, M.D.1
Farnet, C.M.2
Bushman, F.D.3
-
107
-
-
19344375031
-
Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences
-
Mitchell RS, Beitzel BF, Schroder AR et al (2004) Retroviral DNA integration: ASLV, HIV, and MLV show distinct target site preferences. PLoS Biol 2:E234
-
(2004)
PLoS Biol
, vol.2
, pp. E234
-
-
Mitchell, R.S.1
Beitzel, B.F.2
Schroder, A.R.3
-
108
-
-
22644435919
-
Large scaled analysis of hepatitis B virus (HBV) DNA integration in HBV related hepatocellular carcinomas
-
Murakami Y, Saigo K, Takashima H et al (2005) Large scaled analysis of hepatitis B virus (HBV) DNA integration in HBV related hepatocellular carcinomas. Gut 54:1162-1168
-
(2005)
Gut
, vol.54
, pp. 1162-1168
-
-
Murakami, Y.1
Saigo, K.2
Takashima, H.3
-
109
-
-
54749144657
-
Human herpesvirus 6 integrates within telomeric regions as evidenced byfive different chromosomal sites
-
Nacheva EP, Ward KN, Brazma D et al (2008) Human herpesvirus 6 integrates within telomeric regions as evidenced byfive different chromosomal sites. J Med Virol 80:1952-1958
-
(2008)
J Med Virol
, vol.80
, pp. 1952-1958
-
-
Nacheva, E.P.1
Ward, K.N.2
Brazma, D.3
-
110
-
-
77949654113
-
Mechanisms of HBV-related hepatocarcinogenesis
-
Neuveut C, Wei Y, Buendia MA (2010) Mechanisms of HBV-related hepatocarcinogenesis. J Hepatol 52:594-604
-
(2010)
J Hepatol
, vol.52
, pp. 594-604
-
-
Neuveut, C.1
Wei, Y.2
Buendia, M.A.3
-
111
-
-
0001032064
-
Cell transformation by viruses
-
Knipe (PM) DMH (ed). Lippincott Williams & Wilkins, Philadelphia
-
Nevins JR (2007) Cell transformation by viruses. In: Knipe (PM) DMH (ed) Fields virology. Lippincott Williams & Wilkins, Philadelphia, pp 211-250
-
(2007)
Fields Virology
, pp. 211-250
-
-
Nevins, J.R.1
-
112
-
-
82855172228
-
Retroviral insertional mutagenesis can contribute to immortalization of mature T lymphocytes
-
Newrzela S, Cornils K, Heinrich T (2011) Retroviral insertional mutagenesis can contribute to immortalization of mature T lymphocytes. Mol Med 17(11-12):1223-1232
-
(2011)
Mol Med
, vol.17
, Issue.11-12
, pp. 1223-1232
-
-
Newrzela, S.1
Cornils, K.2
Heinrich, T.3
-
113
-
-
0031871102
-
Viruses and apoptosis
-
O'Brien V (1998) Viruses and apoptosis. J Gen Virol 79(Pt 8):1833-1845
-
(1998)
J Gen Virol
, vol.79
, pp. 1833-1845
-
-
O'brien, V.1
-
114
-
-
79953288618
-
HIV integration targeting: A pathway involving transportin-3 and the nuclear pore protein RanBP2
-
Ocwieja KE, Brady TL, Ronen K et al (2011) HIV integration targeting: A pathway involving transportin-3 and the nuclear pore protein RanBP2. PLoS Pathog 7:e1001313
-
(2011)
PLoS Pathog
, vol.7
, pp. e1001313
-
-
Ocwieja, K.E.1
Brady, T.L.2
Ronen, K.3
-
115
-
-
84860306214
-
Chromosomally integrated human herpesvirus 6: Questions and answers
-
Pellett PE, Ablashi DV, Ambros PF et al (2011) Chromosomally integrated human herpesvirus 6: questions and answers. Rev Med Virol.
-
(2011)
Rev Med Virol
-
-
Pellett, P.E.1
Ablashi, D.V.2
Ambros, P.F.3
-
116
-
-
43049182995
-
Integrase, LEDGF/p75 and HIV replication
-
Poeschla EM (2008) Integrase, LEDGF/p75 and HIV replication. Cell Mol Life Sci 65:1403-1424
-
(2008)
Cell Mol Life Sci
, vol.65
, pp. 1403-1424
-
-
Poeschla, E.M.1
-
117
-
-
11444267813
-
The repair of double-strand breaks in plants: Mechanisms and consequences for genome evolution
-
Puchta H (2005) The repair of double-strand breaks in plants: mechanisms and consequences for genome evolution. J Exp Bot 56:1-14
-
(2005)
J Exp Bot
, vol.56
, pp. 1-14
-
-
Puchta, H.1
-
118
-
-
77955387972
-
Identification of host proteins associated with HIV-1 preintegration complexes isolated from infected CD4+ cells
-
Raghavendra NK, Shkriabai N, Graham R, Hess S, Kvaratskhelia M, Wu L (2010) Identification of host proteins associated with HIV-1 preintegration complexes isolated from infected CD4+ cells. Retrovirology 7:66
-
(2010)
Retrovirology
, vol.7
, pp. 66
-
-
Raghavendra, N.K.1
Shkriabai, N.2
Graham, R.3
Hess, S.4
Kvaratskhelia, M.5
Wu, L.6
-
119
-
-
51249105187
-
The evolution, regulation, and function of placenta-specific genes
-
Rawn SM, Cross JC (2008) The evolution, regulation, and function of placenta-specific genes. Annu Rev Cell Dev Biol 24:159-181
-
(2008)
Annu Rev Cell Dev Biol
, vol.24
, pp. 159-181
-
-
Rawn, S.M.1
Cross, J.C.2
-
120
-
-
0027158091
-
Integration of murine leukemia virus DNA depends on mitosis
-
Roe T, Reynolds TC, Yu G, Brown PO (1993) Integration of murine leukemia virus DNA depends on mitosis. EMBO J 12:2099-2108
-
(1993)
EMBO J
, vol.12
, pp. 2099-2108
-
-
Roe, T.1
Reynolds, T.C.2
Yu, G.3
Brown, P.O.4
-
121
-
-
79960404187
-
Gammaretroviral integration into nucleosomal target DNA in vivo
-
Roth SL, Malani N, Bushman FD (2011) Gammaretroviral integration into nucleosomal target DNA in vivo . J Virol 85:7393-7401
-
(2011)
J Virol
, vol.85
, pp. 7393-7401
-
-
Roth, S.L.1
Malani, N.2
Bushman, F.D.3
-
123
-
-
84855278211
-
HIV-1 capsid-cyclophilin interactions determine nuclear import pathway, integration targeting and replication efficiency
-
Schaller T, Ocwieja KE, Rasaiyaah J et al (2011) HIV-1 capsid-cyclophilin interactions determine nuclear import pathway, integration targeting and replication efficiency. PLoS Pathog 7:e1002439
-
(2011)
PLoS Pathog
, vol.7
, pp. e1002439
-
-
Schaller, T.1
Ocwieja, K.E.2
Rasaiyaah, J.3
-
124
-
-
84861483595
-
LEDGF/p75-independent HIV-1 replication demonstrates a role for HRP-2 and remains sensitive to inhibition by LEDGINs
-
Schrijvers R, De Rijck J, Demeulemeester J et al (2012) LEDGF/p75-independent HIV-1 replication demonstrates a role for HRP-2 and remains sensitive to inhibition by LEDGINs. PLoS Pathog 8:e1002558
-
(2012)
PLoS Pathog
, vol.8
, pp. e1002558
-
-
Schrijvers, R.1
De Rijck, J.2
Demeulemeester, J.3
-
125
-
-
0037162715
-
HIV-1 integration in the human genome favors active genes and local hotspots
-
Schroder AR, Shinn P, Chen H, Berry C, Ecker JR, Bushman F (2002) HIV-1 integration in the human genome favors active genes and local hotspots. Cell 110:521-529
-
(2002)
Cell
, vol.110
, pp. 521-529
-
-
Schroder, A.R.1
Shinn, P.2
Chen, H.3
Berry, C.4
Ecker, J.R.5
Bushman, F.6
-
126
-
-
79956082418
-
Influence of host gene transcription level and orientation on HIV-1 latency in a primary-cell model
-
Shan L, Yang HC, Rabi SA et al (2011) Influence of host gene transcription level and orientation on HIV-1 latency in a primary-cell model. J Virol 85:5384-5393
-
(2011)
J Virol
, vol.85
, pp. 5384-5393
-
-
Shan, L.1
Yang, H.C.2
Rabi, S.A.3
-
127
-
-
34447513231
-
LEDGF/p75 functions downstream from preintegration complex formation to effect gene-specific HIV-1 integration
-
Shun MC, Raghavendra NK, Vandegraaff N et al (2007) LEDGF/p75 functions downstream from preintegration complex formation to effect gene-specific HIV-1 integration. Genes Dev 21:1767-1778
-
(2007)
Genes Dev
, vol.21
, pp. 1767-1778
-
-
Shun, M.C.1
Raghavendra, N.K.2
Vandegraaff, N.3
-
128
-
-
79952109521
-
What do we need to do to cure HIV infection
-
Siliciano RF (2010) What do we need to do to cure HIV infection. Top HIV Med 18:104-108
-
(2010)
Top HIV Med
, vol.18
, pp. 104-108
-
-
Siliciano, R.F.1
-
129
-
-
77949707011
-
Modification of integration site preferences of an HIV-1-based vector by expression of a novel synthetic protein
-
Silvers RM, Smith JA, Schowalter M et al (2010) Modification of integration site preferences of an HIV-1-based vector by expression of a novel synthetic protein. Hum Gene Ther 21:337-349
-
(2010)
Hum Gene Ther
, vol.21
, pp. 337-349
-
-
Silvers, R.M.1
Smith, J.A.2
Schowalter, M.3
-
130
-
-
20744447462
-
Recombinant human immunodeficiency virus type 1 integrase exhibits a capacity for full-site integration in vitro that is comparable to that of purified preintegration complexes from virus-infected cells
-
Sinha S, Grandgenett DP (2005) Recombinant human immunodeficiency virus type 1 integrase exhibits a capacity for full-site integration in vitro that is comparable to that of purified preintegration complexes from virus-infected cells. J Virol 79:8208-8216
-
(2005)
J Virol
, vol.79
, pp. 8208-8216
-
-
Sinha, S.1
Grandgenett, D.P.2
-
131
-
-
0036118227
-
Efficient concerted integration by recombinant human immunodeficiency virus type 1 integrase without cellular or viral cofactors
-
Sinha S, Pursley MH, Grandgenett DP (2002) Efficient concerted integration by recombinant human immunodeficiency virus type 1 integrase without cellular or viral cofactors. J Virol 76:3105-3113
-
(2002)
J Virol
, vol.76
, pp. 3105-3113
-
-
Sinha, S.1
Pursley, M.H.2
Grandgenett, D.P.3
-
132
-
-
84855581241
-
Changes in the topology of gene expression networks by human immunodeficiency virus type 1 (HIV-1) integration in macrophages
-
Soto-Giron MJ, Garcia-Vallejo F (2012) Changes in the topology of gene expression networks by human immunodeficiency virus type 1 (HIV-1) integration in macrophages. Virus Res, 163:91-7
-
(2012)
Virus Res
, vol.163
, pp. 91-97
-
-
Soto-Giron, M.J.1
Garcia-Vallejo, F.2
-
133
-
-
0020488055
-
Nucleotide sequence at the site of junction between adenovirus type 12 DNA and repetitive hamster cell DNA in transformed cell line CLAC1
-
Stabel S, Doerfler W (1982) Nucleotide sequence at the site of junction between adenovirus type 12 DNA and repetitive hamster cell DNA in transformed cell line CLAC1. Nucleic Acids Res 10:8007-8023
-
(1982)
Nucleic Acids Res
, vol.10
, pp. 8007-8023
-
-
Stabel, S.1
Doerfler, W.2
-
134
-
-
58149198186
-
Homologous and heterologous recombination between adenovirus vector DNA and chromosomal DNA
-
Stephen SL, Sivanandam VG, Kochanek S (2008) Homologous and heterologous recombination between adenovirus vector DNA and chromosomal DNA. J Gene Med 10:1176-1189
-
(2008)
J Gene Med
, vol.10
, pp. 1176-1189
-
-
Stephen, S.L.1
Sivanandam, V.G.2
Kochanek, S.3
-
135
-
-
77956839837
-
Chromosomal integration of adenoviral vector DNA in vivo
-
Stephen SL, Montini E, Sivanandam VG et al (2010) Chromosomal integration of adenoviral vector DNA in vivo . J Virol 84:9987-9994
-
(2010)
J Virol
, vol.84
, pp. 9987-9994
-
-
Stephen, S.L.1
Montini, E.2
Sivanandam, V.G.3
-
136
-
-
0030752558
-
Adeno-associated virus Rep proteins target DNA sequences to a unique locus in the human genome
-
Surosky RT, Urabe M, Godwin SG et al (1997) Adeno-associated virus Rep proteins target DNA sequences to a unique locus in the human genome. J Virol 71:7951-7959
-
(1997)
J Virol
, vol.71
, pp. 7951-7959
-
-
Surosky, R.T.1
Urabe, M.2
Godwin, S.G.3
-
137
-
-
33847139800
-
The road to chromatin-nuclear entry of retroviruses
-
Suzuki Y, Craigie R (2007) The road to chromatin-nuclear entry of retroviruses. Nat Rev Microbiol 5:187-196
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 187-196
-
-
Suzuki, Y.1
Craigie, R.2
-
138
-
-
1242271330
-
Integration of Epstein-Barr virus into chromosome 6q15 of burkitt lymphoma cell line (raji) induces loss of BACH2 expression
-
Takakuwa T, Luo WJ, Ham MF, Sakane-Ishikawa F, Wada N, Aozasa K (2004) Integration of Epstein-Barr virus into chromosome 6q15 of burkitt lymphoma cell line (raji) induces loss of BACH2 expression. Am J Pathol 164:967-974
-
(2004)
Am J Pathol
, vol.164
, pp. 967-974
-
-
Takakuwa, T.1
Luo, W.J.2
Ham, M.F.3
Sakane-Ishikawa, F.4
Wada, N.5
Aozasa, K.6
-
139
-
-
25644451270
-
Hepatitis B virus DNA integration in hepatocellular carcinoma after interferon-induced disappearance of hepatitis C virus
-
Tamori A, Nishiguchi S, Shiomi S et al (2005) Hepatitis B virus DNA integration in hepatocellular carcinoma after interferon-induced disappearance of hepatitis C virus. Am J Gastroenterol 100:1748-1753
-
(2005)
Am J Gastroenterol
, vol.100
, pp. 1748-1753
-
-
Tamori, A.1
Nishiguchi, S.2
Shiomi, S.3
-
140
-
-
13144252211
-
Occurrence of a DNA sequence of a non-retro RNA virus in a host plant genome and its expression: Evidence for recombination between viral and host RNAs
-
Tanne E, Sela I (2005) Occurrence of a DNA sequence of a non-retro RNA virus in a host plant genome and its expression: evidence for recombination between viral and host RNAs. Virology 332:614-622
-
(2005)
Virology
, vol.332
, pp. 614-622
-
-
Tanne, E.1
Sela, I.2
-
141
-
-
51849150399
-
Chromatin tethering of incoming foamy virus by the structural Gag protein
-
Tobaly-Tapiero J, Bittoun P, Lehmann-Che J et al (2008) Chromatin tethering of incoming foamy virus by the structural Gag protein. Traffic 9:1717-1727
-
(2008)
Traffic
, vol.9
, pp. 1717-1727
-
-
Tobaly-Tapiero, J.1
Bittoun, P.2
Lehmann-Che, J.3
-
142
-
-
0025889790
-
Chromosomal sites for hepatitis B virus integration in human hepatocellular carcinoma
-
Tokino T, Matsubara K (1991) Chromosomal sites for hepatitis B virus integration in human hepatocellular carcinoma. J Virol 65:6761-6764
-
(1991)
J Virol
, vol.65
, pp. 6761-6764
-
-
Tokino, T.1
Matsubara, K.2
-
143
-
-
33646130853
-
Requirement for SWI/SNF chromatin-remodeling complex in Tat-mediated activation of the HIV-1 promoter
-
Treand C, du Chene I, Bres V et al (2006) Requirement for SWI/SNF chromatin-remodeling complex in Tat-mediated activation of the HIV-1 promoter. EMBO J 25:1690-1699
-
(2006)
EMBO J
, vol.25
, pp. 1690-1699
-
-
Treand, C.1
Du Chene, I.2
Bres, V.3
-
145
-
-
0028916052
-
Asymmetric replication in vitro from a human sequence element is dependent on adeno-associated virus Rep protein
-
Urcelay E, Ward P, Wiener SM, Safer B, Kotin RM (1995) Asymmetric replication in vitro from a human sequence element is dependent on adeno-associated virus Rep protein. J Virol 69: 2038-2046
-
(1995)
J Virol
, vol.69
, pp. 2038-2046
-
-
Urcelay, E.1
Ward, P.2
Wiener, S.M.3
Safer, B.4
Kotin, R.M.5
-
146
-
-
32344452179
-
Cellular co-factors of HIV-1 integration
-
Van Maele B, Busschots K, Vandekerckhove L, Christ F, Debyser Z (2006) Cellular co-factors of HIV-1 integration. Trends Biochem Sci 31:98-105
-
(2006)
Trends Biochem Sci
, vol.31
, pp. 98-105
-
-
Van Maele, B.1
Busschots, K.2
Vandekerckhove, L.3
Christ, F.4
Debyser, Z.5
-
147
-
-
0242409493
-
ORF73 of herpesvirus saimiri strain C488 tethers the viral genome to metaphase chromosomes and binds to cis-acting DNA sequences in the terminal repeats
-
Verma SC, Robertson ES (2003) ORF73 Of herpesvirus saimiri strain C488 tethers the viral genome to metaphase chromosomes and binds to cis-acting DNA sequences in the terminal repeats. J Virol 77:12494-12506
-
(2003)
J Virol
, vol.77
, pp. 12494-12506
-
-
Verma, S.C.1
Robertson, E.S.2
-
148
-
-
34249310695
-
Human herpesvirus-6 encephalitis following allogeneic hematopoietic stem cell transplantation
-
Vu T, Carrum G, Hutton G, Heslop HE, Brenner MK, Kamble R (2007) Human herpesvirus-6 encephalitis following allogeneic hematopoietic stem cell transplantation. Bone Marrow Transplant 39:705-709
-
(2007)
Bone Marrow Transplant
, vol.39
, pp. 705-709
-
-
Vu, T.1
Carrum, G.2
Hutton, G.3
Heslop, H.E.4
Brenner, M.K.5
Kamble, R.6
-
149
-
-
34547635063
-
HIV integration site selection: Analysis by massively parallel pyrosequencing reveals association with epigenetic modifications
-
Wang GP, CiuffiA, Leipzig J, Berry CC, Bushman FD (2007) HIV integration site selection: analysis by massively parallel pyrosequencing reveals association with epigenetic modifications. Genome Res 17:1186-1194
-
(2007)
Genome Res
, vol.17
, pp. 1186-1194
-
-
Wang, G.P.1
Ciuffi, A.2
Leipzig, J.3
Berry, C.C.4
Bushman, F.D.5
-
150
-
-
67349132909
-
Analysis of lentiviral vector integration in HIV + study subjects receiving autologous infusions of gene modified CD4+ T cells
-
Wang GP, Levine BL, Binder GK et al (2009) Analysis of lentiviral vector integration in HIV + study subjects receiving autologous infusions of gene modified CD4+ T cells. Mol Ther 17:844-850
-
(2009)
Mol Ther
, vol.17
, pp. 844-850
-
-
Wang, G.P.1
Levine, B.L.2
Binder, G.K.3
-
151
-
-
0028307303
-
Adeno-associated virus (AAV) Rep proteins mediate complex formation between AAV DNA and its integration site in human DNA
-
Weitzman MD, Kyostio SR, Kotin RM, Owens RA (1994) Adeno-associated virus (AAV) Rep proteins mediate complex formation between AAV DNA and its integration site in human DNA. Proc Natl Acad Sci USA 91:5808-5812
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 5808-5812
-
-
Weitzman, M.D.1
Kyostio, S.R.2
Kotin, R.M.3
Owens, R.A.4
-
152
-
-
0036890866
-
Integrative recombination between adenovirus type 12 DNA and mammalian DNA in a cell-free system: Joining by short sequence homologies
-
Wronka G, Fechteler K, Schmitz B, Doerfler W (2002) Integrative recombination between adenovirus type 12 DNA and mammalian DNA in a cell-free system: joining by short sequence homologies. Virus Res 90:225-242
-
(2002)
Virus Res
, vol.90
, pp. 225-242
-
-
Wronka, G.1
Fechteler, K.2
Schmitz, B.3
Doerfler, W.4
-
153
-
-
0037841763
-
Transcription start regions in the human genome are favored targets for MLV integration
-
Wu X, Li Y, Crise B, Burgess SM (2003) Transcription start regions in the human genome are favored targets for MLV integration. Science 300:1749-1751
-
(2003)
Science
, vol.300
, pp. 1749-1751
-
-
Wu, X.1
Li, Y.2
Crise, B.3
Burgess, S.M.4
-
154
-
-
0023201790
-
Multiple integration site of hepatitis B virus DNA in hepatocellular carcinoma and chronic active hepatitis tissues from children
-
Yaginuma K, Kobayashi H, Kobayashi M, Morishima T, Matsuyama K, Koike K (1987) Multiple integration site of hepatitis B virus DNA in hepatocellular carcinoma and chronic active hepatitis tissues from children. J Virol 61:1808-1813
-
(1987)
J Virol
, vol.61
, pp. 1808-1813
-
-
Yaginuma, K.1
Kobayashi, H.2
Kobayashi, M.3
Morishima, T.4
Matsuyama, K.5
Koike, K.6
-
155
-
-
70349914706
-
Identification of a high incidence region for retroviral vector integration near exon 1 of the LMO2 locus
-
Yamada K, Tsukahara T, Yoshino K et al (2009) Identification of a high incidence region for retroviral vector integration near exon 1 of the LMO2 locus. Retrovirology 6:79
-
(2009)
Retrovirology
, vol.6
, pp. 79
-
-
Yamada, K.1
Tsukahara, T.2
Yoshino, K.3
-
156
-
-
0033797161
-
Genetic characterization of rebounding HIV-1 after cessation of highly active antiretroviral therapy
-
Zhang L, Chung C, Hu BS et al (2000) Genetic characterization of rebounding HIV-1 after cessation of highly active antiretroviral therapy. J Clin Invest 106:839-845
-
(2000)
J Clin Invest
, vol.106
, pp. 839-845
-
-
Zhang, L.1
Chung, C.2
Hu, B.S.3
-
157
-
-
84860113335
-
Dr.VIS: A database of human disease-related viral integration sites
-
Zhao X, Liu Q, Cai Q (2012) Dr.VIS: A database of human disease-related viral integration sites. Nucleic Acids Res 40:D1041-D1046
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D1041-D1046
-
-
Zhao, X.1
Liu, Q.2
Cai, Q.3
-
158
-
-
0014954132
-
Presence of EB virus nucleic acid homology in a "virus-free" line of burkitt tumour cells
-
Zur Hausen H, Schulte-Holthausen H (1970) Presence of EB virus nucleic acid homology in a "virus-free" line of burkitt tumour cells. Nature 227:245-248
-
(1970)
Nature
, vol.227
, pp. 245-248
-
-
Zur Hausen, H.1
Schulte-Holthausen, H.2
|