Retraction: Role of the PWWP domain of lens epithelium-derived growth factor (LEDGF)/p75 cofactor in lentiviral integration targeting (Journal of Biological Chemistry (2011) 286 (41812-41825) DOI: 10.1074/jbc.M111.255711);Role of the PWWP domain of lens epithelium-derived growth factor (LEDGF)/p75 cofactor in lentiviral integration targeting

Journal of Biological Chemistry

Volumn 286, Issue 48, 2011, Pages 41812-41825

  Gijsbers, Rik ^a,c   Vets, Sofie ^a   De Rijck, Jan ^a   Ocwieja, Karen E ^b   Ronen, Keshet ^b,d   Malani, Nirav ^b   Bushman, Frederic D ^b   Debyser, Zeger ^a,c  

^a UNIVERSITY OF LEUVEN   (Belgium)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

^c VCTB+5 ^*  (Belgium)

^d USA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL CULTURE; CHROMOSOMES; DISEASES; VIRUSES;

DISTRIBUTION PATTERNS; HEPATOMA-DERIVED GROWTH FACTORS; LENS EPITHELIUM-DERIVED GROWTH FACTORS; LENTIVIRAL VECTOR; POST-TRANSLATIONAL MODIFICATIONS; SITE DISTRIBUTION; VIRAL REPLICATION; VIRUS REPLICATION;

INTEGRATION;

CELL PROTEIN; GENE PRODUCT; HEPATOMA DERIVED GROWTH FACTOR; HEPATOMA DERIVED GROWTH FACTOR RELATED PROTEIN 2; HYBRID PROTEIN; INTEGRASE; LENS EPITHELIUM DERIVED GROWTH FACTOR P75 COFACTOR; UNCLASSIFIED DRUG;

ARTICLE; CELL NUCLEUS; CELLULAR DISTRIBUTION; CHIMERA; CHROMATIN CONDENSATION; CONSENSUS SEQUENCE; CONTROLLED STUDY; CPG ISLAND; EPIGENETICS; GENE SILENCING; HUMAN; HUMAN CELL; HUMAN IMMUNODEFICIENCY VIRUS 1; INTERPHASE; MITOSIS; PRIORITY JOURNAL; PROTEIN DEPLETION; PROTEIN DOMAIN; PROTEIN INTERACTION; PROTEIN LOCALIZATION; PROTEIN TARGETING; VIRUS DNA CELL DNA INTERACTION; VIRUS REPLICATION;

EID: 82355171876     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.W117.001458     Document Type: Erratum

References (84)

1. Schröder, A. R., Shinn, P., Chen, H., Berry, C., Ecker, J. R., and Bushman, F. (2002) Cell 110, 521-529
2. Wu, X., Li, Y., Crise, B., and Burgess, S. M. (2003) Science 300, 1749-1751
3. Mitchell, R. S., Beitzel, B. F., Schroder, A. R., Shinn, P., Chen, H., Berry, C. C., Ecker, J. R., and Bushman, F. D. (2004) PLoS Biol. 2, E234
4. Narezkina, A., Taganov, K. D., Litwin, S., Stoyanova, R., Hayashi, J., Seeger, C., Skalka, A. M., and Katz, R. A. (2004) J. Virol. 78, 11656-11663
5. Derse, D., Crise, B., Li, Y., Princler, G., Lum, N., Stewart, C., McGrath, C. F., Hughes, S. H., Munroe, D. J., and Wu, X. (2007) J. Virol. 81, 6731-6741
6. Meekings, K. N., Leipzig, J., Bushman, F. D., Taylor, G. P., and Bangham, C. R. (2008) PLoS Pathog. 4, e1000027
7. Brady, T. L., Fuerst, P. G., Dick, R. A., Schmidt, C., and Voytas, D. F. (2008) Mol. Cell. Biol. 28, 1230-1239
8. Dai, J., Xie, W., Brady, T. L., Gao, J., and Voytas, D. F. (2007) Mol. Cell 27, 289-299
9. Xie, W., Gai, X., Zhu, Y., Zappulla, D. C., Sternglanz, R., and Voytas, D. F. (2001) Mol. Cell. Biol. 21, 6606-6614
10. Cherepanov, P., Maertens, G., Proost, P., Devreese, B., Van Beeumen, J., Engelborghs, Y., De Clercq, E., and Debyser, Z. (2003) J. Biol. Chem. 278, 372-381
11. De Rijck, J., Vandekerckhove, L., Gijsbers, R., Hombrouck, A., Hendrix, J., Vercammen, J., Engelborghs, Y., Christ, F., and Debyser, Z. (2006) J. Virol. 80, 11498-11509
12. Hombrouck, A., De Rijck, J., Hendrix, J., Vandekerckhove, L., Voet, A., De Maeyer, M., Witvrouw, M., Engelborghs, Y., Christ, F., Gijsbers, R., and Debyser, Z. (2007) PLoS Pathog. 3, e47
13. Llano, M., Saenz, D. T., Meehan, A., Wongthida, P., Peretz, M., Walker, W. H., Teo, W., and Poeschla, E. M. (2006) Science 314, 461-464
14. Vandekerckhove, L., Christ, F., Van Maele, B., De Rijck, J., Gijsbers, R., Van den Haute, C., Witvrouw, M., and Debyser, Z. (2006) J. Virol. 80, 1886-1896
15. Shun, M. C., Raghavendra, N. K., Vandegraaff, N., Daigle, J. E., Hughes, S., Kellam, P., Cherepanov, P., and Engelman, A. (2007) Genes Dev. 21, 1767-1778
16. Marshall, H. M., Ronen, K., Berry, C., Llano, M., Sutherland, H., Saenz, D., Bickmore, W., Poeschla, E., and Bushman, F. D. (2007) PLoS ONE 2, e1340
17. Gijsbers, R., Ronen, K., Vets, S., Malani, N., De Rijck, J., McNeely, M., Bushman, F. D., and Debyser, Z. (2010) Mol Ther 18, 552-560
18. Ferris, A. L., Wu, X., Hughes, C. M., Stewart, C., Smith, S. J., Milne, T. A., Wang, G. G., Shun, M. C., Allis, C. D., Engelman, A., and Hughes, S. H. (2010) Proc. Natl. Acad. Sci. U.S.A. 107, 3135-3140
19. Meehan, A. M., Saenz, D. T., Morrison, J. H., Garcia-Rivera, J. A., Peretz, M., Llano, M., and Poeschla, E. M. (2009) PLoS Pathog. 5, e1000522
20. Silvers, R. M., Smith, J. A., Schowalter, M., Litwin, S., Liang, Z., Geary, K., and Daniel, R. (2010) Hum. Gene Ther. 21, 337-349
21. Zielske, S. P., and Stevenson, M. (2006) J. Virol. 80, 7275-7280
22. Llano, M., Vanegas, M., Fregoso, O., Saenz, D., Chung, S., Peretz, M., and Poeschla, E. M. (2004) J. Virol. 78, 9524-9537
23. Vandegraaff, N., Devroe, E., Turlure, F., Silver, P. A., and Engelman, A. (2006) Virology 346, 415-426
24. Ciuffi, A., Llano, M., Poeschla, E., Hoffmann, C., Leipzig, J., Shinn, P., Ecker, J. R., and Bushman, F. (2005) Nat. Med. 11, 1287-1289
25. Christ, F., Voet, A., Marchand, A., Nicolet, S., Desimmie, B. A., Marchand, D., Bardiot, D., Van der Veken, N. J., Van Remoortel, B., Strelkov, S. V., De Maeyer, M., Chaltin, P., and Debyser, Z. (2010) Nat Chem. Biol. 6, 442-448
26. Brass, A. L., Dykxhoorn, D. M., Benita, Y., Yan, N., Engelman, A., Xavier, R. J., Lieberman, J., and Elledge, S. J. (2008) Science 319, 921-926
27. König, R., Zhou, Y., Elleder, D., Diamond, T. L., Bonamy, G. M., Irelan, J. T., Chiang, C. Y., Tu, B. P., De Jesus, P. D., Lilley, C. E., Seidel, S., Opaluch, A. M., Caldwell, J. S., Weitzman, M. D., Kuhen, K. L., Bandyopadhyay, S., Ideker, T., Orth, A. P., Miraglia, L. J., Bushman, F. D., Young, J. A., and Chanda, S. K. (2008) Cell 135, 49-60
28. Yeung, M. L., Houzet, L., Yedavalli, V. S., and Jeang, K. T. (2009) J. Biol. Chem. 284, 19463-19473
29. Zhou, H., Xu, M., Huang, Q., Gates, A. T., Zhang, X. D., Castle, J. C., Stec, E., Ferrer, M., Strulovici, B., Hazuda, D. J., and Espeseth, A. S. (2008) Cell Host Microbe 4, 495-504
30. De Rijck, J., Bartholomeeusen, K., Ceulemans, H., Debyser, Z., and Gijsbers, R. (2010) Nucleic Acids Res. 38, 6135-6147
31. Busschots, K., Voet, A., De Maeyer, M., Rain, J. C., Emiliani, S., Benarous, R., Desender, L., Debyser, Z., and Christ, F. (2007) J. Mol. Biol. 365, 1480-1492
32. Emiliani, S., Mousnier, A., Busschots, K., Maroun, M., Van Maele, B., Tempé, D., Vandekerckhove, L., Moisant, F., Ben-Slama, L., Witvrouw, M., Christ, F., Rain, J. C., Dargemont, C., Debyser, Z., and Benarous, R. (2005) J. Biol. Chem. 280, 25517-25523
33. Cherepanov, P., Ambrosio, A. L., Rahman, S., Ellenberger, T., and Engelman, A. (2005) Proc. Natl. Acad. Sci. U.S.A. 102, 17308-17313
34. Cherepanov, P., Devroe, E., Silver, P. A., and Engelman, A. (2004) J. Biol. Chem. 279, 48883-48892
35. Cherepanov, P., Sun, Z. Y., Rahman, S., Maertens, G., Wagner, G., and Engelman, A. (2005) Nat. Struct. Mol. Biol. 12, 526-532
36. Turlure, F., Maertens, G., Rahman, S., Cherepanov, P., and Engelman, A. (2006) Nucleic Acids Res. 34, 1653-1675
37. Llano, M., Vanegas, M., Hutchins, N., Thompson, D., Delgado, S., and Poeschla, E. M. (2006) J. Mol. Biol. 360, 760-773
38. Shun, M. C., Botbol, Y., Li, X., Di Nunzio, F., Daigle, J. E., Yan, N., Lieberman, J., Lavigne, M., and Engelman, A. (2008) J. Virol. 82, 11555-11567
39. Maurer-Stroh, S., Dickens, N. J., Hughes-Davies, L., Kouzarides, T., Eisenhaber, F., and Ponting, C. P. (2003) Trends Biochem. Sci. 28, 69-74
40. Taverna, S. D., Li, H., Ruthenburg, A. J., Allis, C. D., and Patel, D. J. (2007) Nat. Struct. Mol. Biol. 14, 1025-1040
41. Stec, I., Nagl, S. B., van Ommen, G. J., and den Dunnen, J. T. (2000) FEBS Lett. 473, 1-5
42. Nameki, N., Tochio, N., Koshiba, S., Inoue, M., Yabuki, T., Aoki, M., Seki, E., Matsuda, T., Fujikura, Y., Saito, M., Ikari, M., Watanabe, M., Terada, T., Shirouzu, M., Yoshida, M., Hirota, H., Tanaka, A., Hayashizaki, Y., Güntert, P., Kigawa, T., and Yokoyama, S. (2005) Protein Sci. 14, 756-764
43. Lukasik, S. M., Cierpicki, T., Borloz, M., Grembecka, J., Everett, A., and Bushweller, J. H. (2006) Protein Sci. 15, 314-323
44. Slater, L. M., Allen, M. D., and Bycroft, M. (2003) J. Mol. Biol. 330, 571-576
45. Yang, J., and Everett, A. D. (2007) BMC Mol. Biol. 8, 101
46. Vanegas, M., Llano, M., Delgado, S., Thompson, D., Peretz, M., and Poeschla, E. (2005) J. Cell Sci. 118, 1733-1743
47. McNeely, M., Hendrix, J., Busschots, K., Boons, E., Deleersnijder, A., Gerard, M., Christ, F., and Debyser, Z. (2011) J. Mol. Biol. 410, 811-830
48. Geraerts, M., Michiels, M., Baekelandt, V., Debyser, Z., and Gijsbers, R. (2005) J. Gene Med. 7, 1299-1310
49. Ibrahimi, A., Vande Velde, G., Reumers, V., Toelen, J., Thiry, I., Vandeputte, C., Vets, S., Deroose, C., Bormans, G., Baekelandt, V., Debyser, Z., and Gijsbers, R. (2009) Hum. Gene Ther. 20, 845-860
50. Naldini, L., Blömer, U., Gallay, P., Ory, D., Mulligan, R., Gage, F. H., Verma, I. M., and Trono, D. (1996) Science 272, 263-267
51. Olsen, J. C. (1998) Gene Ther. 5, 1481-1487
52. Geraerts, M., Willems, S., Baekelandt, V., Debyser, Z., and Gijsbers, R. (2006) BMC Biotechnol. 6, 34
53. Pauwels, R., Balzarini, J., Baba, M., Snoeck, R., Schols, D., Herdewijn, P., Desmyter, J., and De Clercq, E. (1988) J. Virol. Methods 20, 309-321
54. Berry, C., Hannenhalli, S., Leipzig, J., and Bushman, F. D. (2006) PLoS Comput. Biol. 2, e157
55. Brady, T., Agosto, L. M., Malani, N., Berry, C. C., O'Doherty, U., and Bushman, F. (2009) AIDS 23, 1461-1471
56. Barski, A., Cuddapah, S., Cui, K., Roh, T. Y., Schones, D. E., Wang, Z., Wei, G., Chepelev, I., and Zhao, K. (2007) Cell 129, 823-837
57. Wang, Z., Zang, C., Rosenfeld, J. A., Schones, D. E., Barski, A., Cuddapah, S., Cui, K., Roh, T. Y., Peng, W., Zhang, M. Q., and Zhao, K. (2008) Nat. Genet. 40, 897-903
58. Robertson, A. G., Bilenky, M., Tam, A., Zhao, Y., Zeng, T., Thiessen, N., Cezard, T., Fejes, A. P., Wederell, E. D., Cullum, R., Euskirchen, G., Krzywinski, M., Birol, I., Snyder, M., Hoodless, P. A., Hirst, M., Marra, M. A., and Jones, S. J. (2008) Genome Res. 18, 1906-1917
59. Maertens, G., Cherepanov, P., Pluymers, W., Busschots, K., De Clercq, E., Debyser, Z., and Engelborghs, Y. (2003) J. Biol. Chem. 278, 33528-33539
60. Llano, M., Delgado, S., Vanegas, M., and Poeschla, E. M. (2004) J. Biol. Chem. 279, 55570-55577
61. Busschots, K., Vercammen, J., Emiliani, S., Benarous, R., Engelborghs, Y., Christ, F., and Debyser, Z. (2005) J. Biol. Chem. 280, 17841-17847
62. Cherepanov, P. (2007) Nucleic Acids Res. 35, 113-124
63. Hacker, C. V., Vink, C. A., Wardell, T. W., Lee, S., Treasure, P., Kingsman, S. M., Mitrophanous, K. A., and Miskin, J. E. (2006) Mol. Ther 14, 536-545
64. Vezzoli, A., Bonadies, N., Allen, M. D., Freund, S. M., Santiveri, C. M., Kvinlaug, B. T., Huntly, B. J., Göttgens, B., and Bycroft, M. (2010) Nat. Struct. Mol. Biol. 17, 617-619
65. Dhayalan, A., Rajavelu, A., Rathert, P., Tamas, R., Jurkowska, R. Z., Ragozin, S., and Jeltsch, A. (2010) J. Biol. Chem. 285, 26114-26120
66. Vermeulen, M., Eberl, H. C., Matarese, F., Marks, H., Denissov, S., Butter, F., Lee, K. K., Olsen, J. V., Hyman, A. A., Stunnenberg, H. G., and Mann, M. (2010) Cell 142, 967-980
67. Garcia-Rivera, J. A., Bueno, M. T., Morales, E., Kugelman, J. R., Rodriguez, D. F., and Llano, M. (2010) J. Virol. 84, 740-752
68. Hendrix, J., Gijsbers, R., De Rijck, J., Voet, A., Hotta, J., McNeely, M., Hofkens, J., Debyser, Z., and Engelborghs, Y. (2011) Nucleic Acids Res. 39, 1310-1325
69. Brown-Bryan, T. A., Leoh, L. S., Ganapathy, V., Pacheco, F. J., Mediavilla-Varela, M., Filippova, M., Linkhart, T. A., Gijsbers, R., Debyser, Z., and Casiano, C. A. (2008) Mol. Cancer Res. 6, 1293-1307
70. Botbol, Y., Raghavendra, N. K., Rahman, S., Engelman, A., and Lavigne, M. (2008) Nucleic Acids Res. 36, 1237-1246
71. Singh, D. P., Kubo, E., Takamura, Y., Shinohara, T., Kumar, A., Chylack, L. T., Jr., and Fatma, N. (2006) J. Mol. Biol. 355, 379-394
72. Wu, X., Daniels, T., Molinaro, C., Lilly, M. B., and Casiano, C. A. (2002) Cell Death Differ. 9, 915-925
73. Astiazaran, P., Bueno, M. T., Morales, E., Kugelman, J. R., Garcia-Rivera, J. A., and Llano, M. (2011) Retrovirology 8, 27
74. Tsutsui, K. M., Sano, K., Hosoya, O., Miyamoto, T., and Tsutsui, K. (2011) Nucleic Acids Res. 39, 5067-5081
75. Raska, I., Shaw, P. J., and Cmarko, D. (2006) Curr. Opin. Cell Biol. 18, 325-334
76. Emmott, E., and Hiscox, J. A. (2009) EMBO Rep. 10, 231-238
77. Horke, S., Reumann, K., Schweizer, M., Will, H., and Heise, T. (2004) J. Biol. Chem. 279, 26563-26570
78. Maertens, G. N., Hare, S., and Cherepanov, P. (2010) Nature 468, 326-329
79. Hare, S., Gupta, S. S., Valkov, E., Engelman, A., and Cherepanov, P. (2010) Nature 464, 232-236
80. Wang, G. P., Ciuffi, A., Leipzig, J., Berry, C. C., and Bushman, F. D. (2007) Genome Res. 17, 1186-1194
81. Pruss, D., Reeves, R., Bushman, F. D., and Wolffe, A. P. (1994) J. Biol. Chem. 269, 25031-25041
82. Pryciak, P. M., and Varmus, H. E. (1992) Cell 69, 769-780
83. Purdy, M. M., Holz-Schietinger, C., and Reich, N. O. (2010) Arch. Biochem. Biophys. 498, 13-22
84. Shilatifard, A. (2006) Annu. Rev. Biochem. 75, 243-269