Phosphoproteomics in photosynthetic organisms

Electrophoresis

Volumn 35, Issue 24, 2014, Pages 3441-3451

  Slade, William O ^a   Werth, Emily G ^a   Chao, Alex ^a   Hicks, Leslie M ^a  

^a The University of North Carolina at Chapel Hill   (United States)

Author keywords

Phosphoproteomics; Photosynthetic; Post translational modifications; Proteomics

Indexed keywords

MOLECULAR BIOLOGY;

DYNAMIC ENVIRONMENTS; EXTRACELLULAR CUES; MOLECULAR RESPONSE; PHOSPHOPROTEOMICS; PHOTOSYNTHETIC; PHOTOSYNTHETIC ORGANISMS; POST-TRANSLATIONAL MODIFICATIONS; PROTEOMICS; SESSILE ORGANISMS; SIGNALLING PATHWAYS;

AMINO ACIDS;

MACROGOL; PROTAMINE SULFATE; RIBULOSEBISPHOSPHATE CARBOXYLASE; SERINE; THREONINE; TYROSINE; PHOSPHOPROTEIN;

AFFINITY CHROMATOGRAPHY; ANION EXCHANGE; CATION EXCHANGE; CHEMICAL LABELING; ELUTION; EXTRACTION; HYDROPHILICITY; HYDROPHOBICITY; IMMOBILIZED METAL AFFINITY CHROMATOGRAPHY; LIMIT OF DETECTION; LIMIT OF QUANTITATION; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; METABOLIC LABELING; METAL OXIDE AFFINITY CHROMATOGRAPHY; NONHUMAN; ORGANISMS BY PHOTOSYNTHETIC PATHWAY; PHOSPHOPEPTIDE ENRICHMENT; PHOSPHOPROTEOMICS; POLYMER BASED METAL ION AFFINITY CAPTURE; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DEPLETION; PROTEIN EXTRACTION; PROTEIN PHOSPHORYLATION; PROTEOMICS; REPRODUCIBILITY; REVIEW; SPECTRAL COUNTING; STOICHIOMETRY; CHEMISTRY; METABOLISM; PHOTOSYNTHESIS; PROCEDURES; PROTEIN PROCESSING;

PHOSPHOPROTEINS; PHOTOSYNTHESIS; PROTEIN PROCESSING, POST-TRANSLATIONAL; PROTEOMICS;

EID: 84916891650     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.201400154     Document Type: Review

References (135)

1. Facette, M. R., Shen, Z., Bjornsdottir, F. R., Briggs, S. P., Smith, L. G., Plant Cell 2013, 25, 2798-2812.
2. Walley, J. W., Shen, Z., Sartor, R., Wu, K. J., Osborn, J., Smith, L. G., Briggs, S. P., Proc. Natl. Acad. Sci. USA 2013, 110, E4808-4817.
3. Haruta, M., Sabat, G., Stecker, K., Minkoff, B. B., Sussman, M. R., Science 2014, 343, 408-411.
4. Hu, C. W., Lin, M. H., Huang, H. C., Ku, W. C., Yi, T. H., Tsai, C. F., Chen, Y. J., Sugiyama, N., Ishihama, Y., Juan, H. F., Wu, S. H., J. Proteome Res. 2012, 11, 5362-5375.
5. Kersten, B., Agrawal, G. K., Iwahashi, H., Rakwal, R., Proteomics 2006, 6, 5517-5528.
6. Nakagami, H., Sugiyama, N., Ishihama, Y., Shirasu, K., Plant Cell Physiol. 2012, 53, 118-124.
7. Stulemeijer, I. J., Joosten, M. H., Mol. Plant Pathol. 2008, 9, 545-560.
8. de la Fuente van Bentem, S., Hirt, H., Trends Plant Sci. 2007, 12, 404-411.
9. Kosova, K., Vitamvas, P., Prasil, I. T., Renaut, J., J. Proteomics 2011, 4, 1301-1322.
10. Mazzucotelli, E., Mastrangelo, Anna M., Crosatti, C., Guerra, D., Stanca, A. Michele, Cattivelli, L., Plant Sci. 2008, 174, 420-431.
11. Barkla, B. J., Vera-Estrella, R., Pantoja, O., Proteomics 2013, 13, 1801-1815.
12. Kline-Jonakin, K. G., Barrett-Wilt, G. A., Sussman, M. R., Curr. Opin. Plant Biol. 2011, 14, 507-511.
13. Sun, F., Ding, Y., Ji, Q., Liang, Z., Deng, X., Wong, C. C., Yi, C., Zhang, L., Xie, S., Alvarez, S., Hicks, L. M., Luo, C., Jiang, H., Lan, L., He, C., Proc. Natl. Acad. Sci. USA 2012, 109, 15461-15466.
14. Schmidt, A., Trentini, D. B., Spiess, S., Fuhrmann, J., Ammerer, G., Mechtler, K., Clausen, T., Mol. Cell Proteomics 2014, 13, 537-550.
15. Ciesla, J., Fraczyk, T., Rode, W., Acta. Biochim. Pol. 2011, 58, 137-148.
16. Hall, B. P., Shakeel, S. N., Amir, M., Ul Haq, N., Qu, X., Schaller, G. E., Plant Physiol. 2012, 159, 682-695.
17. Nongpiur, R., Soni, P., Karan, R., Singla-Pareek, S. L., Pareek, A., Plant Signal. Behav. 2012, 7, 1230-1237.
18. McAllister, T. E., Hollins, J. J., Webb, M. E., Biochem. Soc. Trans. 2013, 41, 1072-1077.
19. Piggott, M. J., Attwood, P. V., Nat. Chem. Biol. 2013, 9, 411-412.
20. Gonzalez-Sanchez, M. B., Lanucara, F., Helm, M., Eyers, C. E., Biochem. Soc. Trans. 2013, 41, 1089-1095.
21. Patterson, S. D., Aebersold, R. H., Nat. Genet. 2003, 33, 311-323.
22. Anderson, N. L., Anderson, N. G., Mol. Cell. Proteomics 2002, 1, 845-867.
23. Mechin, V., Damerval, C., Zivy, M., Methods Mol. Biol. 2007, 355, 1-8.
24. Hurkman, W. J., Tanaka, C. K., Plant Physiol. 1986, 81, 802-806.
25. Wang, W., Vignani, R., Scali, M., Cresti, M., Electrophoresis 2006, 27, 2782-2786.
26. Rose, J. K., Bashir, S., Giovannoni, J. J., Jahn, M. M., Saravanan, R. S., Plant J. 2004, 39, 715-733.
27. Saravanan, R. S., Rose, J. K., Proteomics 2004, 4, 2522-2532.
28. Zienkiewicz, A., Rejon, J. D., de Dios Alche, J., Rodriguez-Garcia, M. I., Castro, A. J., Methods Mol. Biol. 2014, 1072, 85-91.
29. Wu, X., Gong, F., Wang, W., Proteomics 2014, 14, 645-658.
30. Cellar, N. A., Kuppannan, K., Langhorst, M. L., Ni, W., Xu, P., Young, S. A., J. Chromatogr. B 2008, 861, 29-39.
31. Zhang, Y., Gao, P., Xing, Z., Jin, S., Chen, Z., Liu, L., Constantino, N., Wang, X., Shi, W., Yuan, J. S., Dai, S. Y., Mol. Cell. Proteomics 2013, 12, 3431-3442.
32. Kim, Y. J., Lee, H. M., Wang, Y., Wu, J., Kim, S. G., Kang, K. Y., Park, K. H., Kim, Y. C., Choi, I. S., Agrawal, G. K., Rakwal, R., Kim, S. T., Proteomics 2013, 13, 2176-2179.
33. Ahsan, N., Lee, D. G., Lee, S. H., Kang, K. Y., Bahk, J. D., Choi, M. S., Lee, I. J., Renaut, J., Lee, B. H., Physiol. Plant 2007, 131, 555-570.
34. Kim, S. T., Cho, K. S., Jang, Y. S., Kang, K. Y., Electrophoresis 2001, 22, 2103-2109.
35. Hesse, A. M., Marcelo, P., Rossier, J., Vinh, J., J. Chromatogr. A 2008 1189, 175-182.
36. Aryal, U. K., Krochko, J. E., Ross, A. R., J. Proteome Res. 2012, 11, 425-437.
37. Boschetti, E., Righetti, P. G., J. Proteomics, 2008, 71, 255-264.
38. Fasoli, E., Pastorello, E. A., Farioli, L., Scibilia, J., Aldini, G., Carini, M., Marocco, A., Boschetti, E., Righetti, P. G., J. Proteomics 2009, 72, 501-510.
39. D'Amato, A., Bachi, A., Fasoli, E., Boschetti, E., Peltre, G., Senechal, H., Sutra, J. P., Citterio, A., Righetti, P. G., J. Proteomics 2010, 73, 1368-1380.
40. Fasoli, E., D'Amato, A., Kravchuk, A. V., Boschetti, E., Bachi, A., Righetti, P. G., J. Proteomics 2011, 74, 127-136.
41. Cereda, A., Kravchuk, A. V., D'Amato, A., Bachi, A., Righetti, P. G., J. Proteomics 2010, 73, 1732-1739.
42. D'Amato, A., Kravchuk, A. V., Bachi, A., Righetti, P. G., J. Proteomics 2010, 73, 2370-2377.
43. Frohlich, A., Gaupels, F., Sarioglu, H., Holzmeister, C., Spannagl, M., Durner, J., Lindermayr, C., Plant Physiol. 2012, 159, 902-914.
44. Fonslow, B. R., Stein, B. D., Webb, K. J., Xu, T., Choi, J., Park, S. K., Yates, J. R. 3rd, Nat. Methods 2013, 10, 54-56.
45. Oda, Y., Nagasu, T., Chait, B. T., Nat. Biotechnol. 2001, 19, 379-382.
46. Mithoe, S. C., Boersema, P. J., Berke, L., Snel, B., Heck, A. J., Menke, F. L., J. Proteome Res. 2012, 11, 438-448.
47. Laugesen, S., Bergoin, A., Rossignol, M., Plant Physol. Biochem. 2004, 42, 929-936.
48. Thaler, F., Valsasina, B., Baldi, R., Xie, J., Stewart, A., Isacchi, A., Kalisz, H. M., Rusconi, L., Anal. Bioanal. Chem. 2003, 376, 366-373.
49. Kwon, S. J., Choi, E. Y., Seo, J. B., Park, O. K., Mol. Cells 2007, 24, 268-275.
50. Beckers, G. J., Hoehenwarter, W., Rohrig, H., Conrath, U., Weckwerth, W., Methods Mol. Biol. 2014, 1072, 621-632.
51. Nakagami, H., Methods Mol. Biol. 2014, 1072, 595-607.
52. Leitner, A., Trends Anal. Chem. 2012, 29, 177-185.
53. Zhang, H., Zhou, H., Berke, L., Heck, A. J., Mohammed, S., Scheres, B., Menke, F. L., Mol. Cell. Proteomics 2013, 12, 1158-1169.
54. Bonhomme, L., Valot, B., Tardieu, F., Zivy, M., Mol. Cell. Proteomics 2012, 11, 957-972.
55. Rose, C. M., Venkateshwaran, M., Volkening, J. D., Grimsrud, P. A., Maeda, J., Bailey, D. J., Park, K., Howes-Podoll, M., den Os, D., Yeun, L. H., Westphall, M. S., Sussman, M. R., Ane, J. M., Coon, J. J., Mol. Cell. Proteomics 2012, 11, 724-744.
56. Larsen, M. R., Thingholm, T. E., Jensen, O. N., Roepstorff, P., Jorgensen, T. J., Mol. Cell. Proteomics 2005, 4, 873-886.
57. Stensballe, A., Andersen, S., Jensen, O. N., Proteomics 2001, 1, 207-222.
58. Shen, F., Hu, Y. F., Guan, P., Ren, X. Q., J. Chromatogr. B 2012, 902, 108-115.
59. Pinkert, A., Marsh, K. N., Pang, S. S., Staiger, M. P., Chem. Rev. 2009, 109, 6712-6728.
60. Hu, Y. F., Guo, S. X., Li, X. X., Ren, X. Q., Electrophoresis 2013, 34, 485.
61. Negroni, L., Claverol, S., Rosenbaum, J., Chevet, E., Bonneu, M., Schmitter, J. M., J. Chromatogr. B 2012, 891-892, 109-112.
62. Iliuk, A. B., Martin, V. A., Alicie, B. M., Geahlen, R. L., Tao, W. A., Mol. Cell. Proteomics 2010, 9, 2162-2172.
63. Yang, F., Melo-Braga, M. N., Larsen, M. R., Jorgensen, H. J., Palmisano, G., Mol. Cell. Proteomics 2013, 12, 2497-2508.
64. Wang, P., Xue, L., Batelli, G., Lee, S., Hou, Y. J., Van Oosten, M. J., Zhang, H., Tao, W. A., Zhu, J. K., Proc. Natl. Acad. Sci. USA 2013, 110, 11205-11210.
65. Fukuda, I., Hirabayashi-Ishioka, Y., Sakikawa, I., Ota, T., Yokoyama, M., Uchiumi, T., Morita, A., J. Proteome Res. 2013, 12, 5587-5597.
66. Kyono, Y., Sugiyama, N., Imami, K., Tomita, M., Ishihama, Y., J. Proteome Res. 2008, 7, 4585-4593.
67. Villen, J., Gygi, S. P., Nat. Protoc. 2008, 3, 1630-1638.
68. McNulty, D. E., Annan, R. S., Mol. Cell. Proteomics 2008, 7, 971-980.
69. Gilar, M., Olivova, P., Daly, A. E., Gebler, J. C., Anal. Chem. 2005, 77, 6426-6434.
70. Wojcechowskyj, J. A., Didigu, C. A., Lee, J. Y., Parrish, N. F., Sinha, R., Hahn, B. H., Bushman, F. D., Jensen, S. T., Seeholzer, S. H., Doms, R. W., Cell Host Microbe 2013, 13, 613-623.
71. Mayya, V., Lundgren, D. H., Hwang, S. I., Rezaul, K., Wu, L., Eng, J. K., Rodionov, V., Han, D. K., Sci. Signal. 2009, 2, ra46.
72. McNutt, M., Science 2014, 343, 229.
73. Landis, S. C., Amara, S. G., Asadullah, K., Austin, C. P., Blumenstein, R., Bradley, E. W., Crystal, R. G., Darnell, R. B., Ferrante, R. J., Fillit, H., Finkelstein, R., Fisher, M., Gendelman, H. E., Golub, R. M., Goudreau, J. L., Gross, R. A., Gubitz, A. K., Hesterlee, S. E., Howells, D. W., Huguenard, J., Kelner, K., Koroshetz, W., Krainc, D., Lazic, S. E., Levine, M. S., Macleod, M. R., McCall, J. M., Moxley, R. T. 3rd, Narasimhan, K., Noble, L. J., Perrin, S., Porter, J. D., Steward, O., Unger, E., Utz, U., Silberberg, S. D., Nature 2012, 490, 187-191.
74. Bereman, M. S., Johnson, R., Bollinger, J., Boss, Y., Shulman, N., Maclean, B., Hoofnagle, A. N., Maccoss, M. J., J. Am. Soc. Mass Spectrom. 2014, 25, 581-587.
75. Sandin, M., Teleman, J., Malmstrom, J., Levander, F., Biochim. Biophys. Acta. 2014, 1844, 29-41.
76. Gu, Q., Yu, L. R., J. Proteomics 2014, 96, 353-359.
77. Carr, S. A., Abbatiello, S. E., Ackermann, B. L., Borchers, C., Domon, B., Deutsch, E. W., Grant, R. P., Hoofnagle, A. N., Huttenhain, R., Koomen, J. M., Liebler, D. C., Liu, T., Maclean, B., Mani, D., Mansfield, E., Neubert, H., Paulovich, A. G., Reiter, L., Vitek, O., Aebersold, R., Anderson, L., Bethem, R., Blonder, J., Boja, E., Botelho, J., Boyne, M., Bradshaw, R. A., Burlingame, A. L., Chan, D., Keshishian, H., Kuhn, E., Kinsinger, C., Lee, J. S., Lee, S. W., Moritz, R., Oses-Prieto, J., Rifai, N., Ritchie, J., Rodriguez, H., Srinivas, P. R., Townsend, R. R., Van Eyk, J., Whiteley, G., Wiita, A., Weintraub, S., Mol. Cell. Proteomics 2014, 13, 907-917.
78. Domon, B., Aebersold, R., Nat. Biotechnol. 2010, 28, 710-721.
79. Lange, V., Picotti, P., Domon, B., Aebersold, R., Mol. Syst. Biol. 2008, 4, 222.
80. Picotti, P., Aebersold, R., Nat. Methods 2012, 9, 555-566.
81. Maiolica, A., Junger, M. A., Ezkurdia, I., Aebersold, R., J. Proteomics 2012, 75, 3495-3513.
82. Gerber, S. A., Rush, J., Stemman, O., Kirschner, M. W., Gygi, S. P., Proc. Natl. Acad. Sci. USA 2003, 100, 6940-6945.
83. Michel, H., Griffin, P. R., Shabanowitz, J., Hunt, D. F., Bennett, J., J. Biol. Chem. 1991, 266, 17584-17591.
84. Wind, M., Edler, M., Jakubowski, N., Linscheid, M., Wesch, H., Lehmann, W. D., Anal. Chem. 2001, 73, 29-35.
85. Minkoff, B. B., Burch, H. L., Sussman, M. R., Arabidopsis Protocols, 3rd Edition, Springer, New York 2014, pp. 353-379.
86. Arsova, B., Zauber, H., Schulze, W. X., Mol. Cell. Proteomics 2012, 11, 619-628.
87. Gruhler, A., Schulze, W. X., Matthiesen, R., Mann, M., Jensen, O. N., Mol. Cell. Proteomics 2005, 4, 1697-1709.
88. Schutz, W., Hausmann, N., Krug, K., Hampp, R., Macek, B., Plant Cell 2011, 23, 1701-1705.
89. Naumann, B., Stauber, E. J., Busch, A., Sommer, F., Hippler, M., J. Biol. Chem. 2005, 280, 20431-20441.
90. Nelson, C. J., Huttlin, E. L., Hegeman, A. D., Harms, A. C., Sussman, M. R., Proteomics 2007, 7, 1279-1292.
91. Stanislas, T., Bouyssie, D., Rossignol, M., Vesa, S., Fromentin, J., Morel, J., Pichereaux, C., Monsarrat, B., Simon-Plas, F., Mol. Cell. Proteomics 2009, 8, 2186-2198.
92. Aryal, U. K., Stockel, J., Krovvidi, R. K., Gritsenko, M. A., Monroe, M. E., Moore, R. J., Koppenaal, D. W., Smith, R. D., Pakrasi, H. B., Jacobs, J. M., BMC Syst. Biol. 2011, 5, 194.
93. Martin, S. F., Munagapati, V. S., Salvo-Chirnside, E., Kerr, L. E., Le Bihan, T., J. Proteome Res. 2012, 11, 476-486.
94. Mueller, S. J., Lang, D., Hoernstein, S. N., Lang, E. G., Schuessele, C., Schmidt, A., Fluck, M., Leisibach, D., Niegl, C., Zimmer, A. D., Schlosser, A., Reski, R., Plant Physiol. 2014, 164, 2081-2095.
95. Huttlin, E. L., Hegeman, A. D., Harms, A. C., Sussman, M. R., Mol. Cell. Proteomics 2007, 6, 860-881.
96. McAlister, G. C., Huttlin, E. L., Haas, W., Ting, L., Jedrychowski, M. P., Rogers, J. C., Kuhn, K., Pike, I., Grothe, R. A., Blethrow, J. D., Gygi, S. P., Anal. Chem. 2012, 84, 7469-7478.
97. Kocher, T., Pichler, P., Schutzbier, M., Stingl, C., Kaul, A., Teucher, N., Hasenfuss, G., Penninger, J. M., Mechtler, K., J. Proteome Res. 2009, 8, 4743-4752.
98. Bantscheff, M., Boesche, M., Eberhard, D., Matthieson, T., Sweetman, G., Kuster, B., Mol. Cell. Proteomics 2008, 7, 1702-1713.
99. Wang, H., Alvarez, S., Hicks, L. M., J. Proteome Res. 2012, 11, 487-501.
100. Karp, N. A., Huber, W., Sadowski, P. G., Charles, P. D., Hester, S. V., Lilley, K. S., Mol. Cell. Proteomics 2010, 9, 1885-1897.
101. Ow, S. Y., Salim, M., Noirel, J., Evans, C., Wright, P. C., Proteomics 2011, 11, 2341-2346.
102. Herbrich, S. M., Cole, R. N., West, K. P., Jr., Schulze, K., Yager, J. D., Groopman, J. D., Christian, P., Wu, L., O'Meally, R. N., May, D. H., McIntosh, M. W., Ruczinski, I., J. Proteome Res. 2013, 12, 594-604.
103. Ting, L., Rad, R., Gygi, S. P., Haas, W., Nat. Methods 2011, 8, 937-940.
104. Wenger, C. D., Lee, M. V., Hebert, A. S., McAlister, G. C., Phanstiel, D. H., Westphall, M. S., Coon, J. J., Nat. Methods 2011, 8, 933-935.
105. Boersema, P. J., Raijmakers, R., Lemeer, S., Mohammed, S., Heck, A. J., Nat. Prot. 2009, 4, 484-494.
106. Hebert, A. S., Merrill, A. E., Stefely, J. A., Bailey, D. J., Wenger, C. D., Westphall, M. S., Pagliarini, D. J., Coon, J. J., Mol. Cell. Proteomics 2013, 12, 3360-3369.
107. Bantscheff, M., Schirle, M., Sweetman, G., Rick, J., Kuster, B., Anal. Bioanal. Chem. 2007, 389, 1017-1031.
108. Patel, V. J., Thalassinos, K., Slade, S. E., Connolly, J. B., Crombie, A., Murrell, J. C., Scrivens, J. H., J. Proteome Res. 2009, 8, 3752-3759.
109. Cooper, B., Feng, J., Garrett, W. M., J. Am. Soc. Mass Spectrom. 2010, 21, 1534-1546.
110. Kiyonami, R., Schoen, A., Prakash, A., Peterman, S., Zabrouskov, V., Picotti, P., Aebersold, R., Huhmer, A., Domon, B., Mol. Cell. Proteomics 2011, 10, M110.002931.
111. Hendrickson, E. L., Xia, Q., Wang, T., Leigh, J. A., Hackett, M., The Analyst 2006, 131, 1335-1341.
112. Krey, J. F., Wilmarth, P. A., Shin, J. B., Klimek, J., Sherman, N. E., Jeffery, E. D., Choi, D., David, L. L., Barr-Gillespie, P. G., J. Proteome Res. 2014, 13, 1034-1044.
113. Xue, L., Wang, P., Wang, L., Renzi, E., Radivojac, P., Tang, H., Arnold, R., Zhu, J. K., Tao, W. A., . Mol. Cell. Proteomics 2013, 12, 2354-2369.
114. Bolstad, B. M., Irizarry, R. A., Astrand, M., Speed, T. P., Bioinformatics 2003, 19, 185-193.
115. Schaab, C., Methods Mol. Biol. 2011, 696, 41-57.
116. Roux, P. P., Thibault, P., Mol. Cell. Proteomics 2013, 12, 3453-3464.
117. Ren, J., Gao, X., Liu, Z., Cao, J., Ma, Q., Xue, Y., Curr. Protein Pept. Sci. 2011, 12, 591-601.
118. Choudhary, J. S., Blackstock, W. P., Creasy, D. M., Cottrell, J. S., Proteomics 2001, 1, 651-667.
119. Searle, B. C., Proteomics 2010, 10, 1265-1269.
120. Baerenfaller, K., Hirsch-Hoffmann, M., Svozil, J., Hull, R., Russenberger, D., Bischof, S., Lu, Q. T., Gruissem, W., Baginsky, S., Integr. Biol.-UK 2011, 3, 225-237.
121. Heazlewood, J. L., Verboom, R. E., Tonti-Filippini, J., Small, I., Millar, A. H., Nucleic Acids Res. 2007, 35, D213-D218.
122. Yao, Q., Ge, H., Wu, S., Zhang, N., Chen, W., Xu, C., Gao, J., Thelen, J. J., Xu, D., Nucleic Acids Res. 2014, 42, D1206-1213.
123. Conesa, A., Götz, S., García-Gómez, J. M., Terol, J., Talón, M., Robles, M., Bioinformatics 2005, 21, 3674-3676.
124. Huang, D. W., Sherman, B. T., Lempicki, R. A., Nat. Protoc. 2009, 4, 44-57.
125. Rayapuram, N., Bonhomme, L., Bigeard, J., Haddadou, K., Przybylski, C., Hirt, H., Pflieger, D., J. Proteome Res. 2014, 13, 2137-2151.
126. Zolnierowicz, S., Bollen, M., EMBO J. 2000, 19, 483-488.
127. Heazlewood, J. L., Durek, P., Hummel, J., Selbig, J., Weckwerth, W., Walther, D., Schulze, W. X., Nucleic Acids Res. 2008, 36, D1015-1021.
128. Rose, C. M., Venkateshwaran, M., Grimsrud, P. A., Westphall, M. S., Sussman, M. R., Coon, J. J., Ane, J. M., Front. Plant Sci. 2012, 3, 122.
129. Obenauer, J. C., Cantley, L. C., Yaffe, M. B., Nucleic Acids Res. 2003, 31, 3635-3641.
130. Nousiainen, M., Sillje, H. H., Sauer, G., Nigg, E. A., Korner, R., Proc. Natl. Acad. Sci. USA 2006, 103, 5391-5396.
131. Kocher, T., Pichler, P., Swart, R., Mechtler, K., Proteomics 2011, 11, 1026-1030.
132. Bantscheff, M., Schirle, M., Sweetman, G., Rick, J., Kuster, B., Anal. Bioanal. Chem. 2007, 389, 1017-1031.
133. Nilsson, C. L., Anal. Chem. 2012, 84, 735-746.
134. Thelen, J. J., Peck, S. C., Plant Cell 2007, 19, 3339-3346.
135. Cairns, D. A., Proteomics 2011, 11, 1037-1048.