-
1
-
-
70349131530
-
The phosphoproteomics data explosion
-
Lemeer, S., and Heck, A. J. (2009) The phosphoproteomics data explosion. Curr. Opin. Chem. Biol. 13, 414-420
-
(2009)
Curr. Opin. Chem. Biol.
, vol.13
, pp. 414-420
-
-
Lemeer, S.1
Heck, A.J.2
-
2
-
-
75749101460
-
Phosphoproteomics for the masses
-
Grimsrud, P. A., Swaney, D. L., Wenger, C. D., Beauchene, N. A., and Coon, J. J. (2010) Phosphoproteomics for the masses. ACS Chem. Biol. 5, 105-119
-
(2010)
ACS Chem. Biol.
, vol.5
, pp. 105-119
-
-
Grimsrud, P.A.1
Swaney, D.L.2
Wenger, C.D.3
Beauchene, N.A.4
Coon, J.J.5
-
3
-
-
75849125610
-
Quantifying oncogenic phosphotyrosine signaling networks through systems biology
-
Del Rosario, A. M., and White, F. M. (2010) Quantifying oncogenic phosphotyrosine signaling networks through systems biology. Curr. Opin. Genet. Dev. 20, 23-30
-
(2010)
Curr. Opin. Genet. Dev.
, vol.20
, pp. 23-30
-
-
Del Rosario, A.M.1
White, F.M.2
-
4
-
-
65349177118
-
The use of titanium dioxide micro-columns to selectively isolate phosphopeptides from proteolytic digests
-
Thingholm, T. E., and Larsen, M. R. (2009) The use of titanium dioxide micro-columns to selectively isolate phosphopeptides from proteolytic digests. Methods Mol. Biol. 527, 57-66
-
(2009)
Methods Mol. Biol.
, vol.527
, pp. 57-66
-
-
Thingholm, T.E.1
Larsen, M.R.2
-
5
-
-
34548704766
-
The Retromer Protein VPS29 Links Cell Polarity and Organ Initiation in Plants
-
DOI 10.1016/j.cell.2007.08.040, PII S0092867407011038
-
Jaillais, Y., Santambrogio, M., Rozier, F., Fobis-Loisy, I., Miège, C., and Gaude, T. (2007) The retromer protein VPS29 links cell polarity and organ initiation in plants. Cell 130, 1057-1070 (Pubitemid 47422306)
-
(2007)
Cell
, vol.130
, Issue.6
, pp. 1057-1070
-
-
Jaillais, Y.1
Santambrogio, M.2
Rozier, F.3
Fobis-Loisy, I.4
Miege, C.5
Gaude, T.6
-
6
-
-
34547110110
-
Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis
-
DOI 10.1074/mcp.M600429-MCP200
-
Benschop, J. J., Mohammed, S., O'Flaherty, M., Heck, A. J., Slijper, M., and Menke, F. L. (2007) Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. Mol. Cell. Proteomics 6, 1198-1214 (Pubitemid 47099230)
-
(2007)
Molecular and Cellular Proteomics
, vol.6
, Issue.7
, pp. 1198-1214
-
-
Benschop, J.J.1
Mohammed, S.2
O'Flaherty, M.3
Heck, A.J.R.4
Slijper, M.5
Menke, F.L.H.6
-
7
-
-
80054038843
-
Enhancing the identification of phosphopeptides from putative basophilic kinase substrates using Ti(IV)-based IMAC enrichment
-
Zhou, H., Low, T. Y., Hennrich, M. L., van der Toorn, H., Schwend, T., Zou, H., Mohammed, S., and Heck, A. J. (2011) Enhancing the identification of phosphopeptides from putative basophilic kinase substrates using Ti(IV)-based IMAC enrichment. Mol. Cell. Proteomics 10, M110 006452
-
(2011)
Mol. Cell. Proteomics
, vol.10
-
-
Zhou, H.1
Low, T.Y.2
Hennrich, M.L.3
Van Der Toorn, H.4
Schwend, T.5
Zou, H.6
Mohammed, S.7
Heck, A.J.8
-
8
-
-
55249104113
-
Specific phosphopeptide enrichment with immobilized titanium ion affinity chromatography adsorbent for phosphoproteome analysis
-
Zhou, H., Ye, M., Dong, J., Han, G., Jiang, X., Wu, R., and Zou, H. (2008) Specific phosphopeptide enrichment with immobilized titanium ion affinity chromatography adsorbent for phosphoproteome analysis. J. Proteome Res. 7, 3957-3967
-
(2008)
J. Proteome Res.
, vol.7
, pp. 3957-3967
-
-
Zhou, H.1
Ye, M.2
Dong, J.3
Han, G.4
Jiang, X.5
Wu, R.6
Zou, H.7
-
9
-
-
77952538049
-
Quantitation in mass-spectrometry-based proteomics
-
Schulze, W. X., and Usadel, B. (2010) Quantitation in mass-spectrometry-based proteomics. Annu. Rev. Plant Biol. 61, 491-516
-
(2010)
Annu. Rev. Plant Biol.
, vol.61
, pp. 491-516
-
-
Schulze, W.X.1
Usadel, B.2
-
10
-
-
79958175082
-
Phosphoproteomics perspective on plant signal transduction and tyrosine phosphorylation
-
Mithoe, S. C., and Menke, F. L. (2011) Phosphoproteomics perspective on plant signal transduction and tyrosine phosphorylation. Phytochemistry 72, 997-1006
-
(2011)
Phytochemistry
, vol.72
, pp. 997-1006
-
-
Mithoe, S.C.1
Menke, F.L.2
-
11
-
-
61549096121
-
Plant phosphoproteomics: An update
-
Kersten, B., Agrawal, G. K., Durek, P., Neigenfind, J., Schulze, W., Walther, D., and Rakwal, R. (2009) Plant phosphoproteomics: an update. Proteomics 9, 964-988
-
(2009)
Proteomics
, vol.9
, pp. 964-988
-
-
Kersten, B.1
Agrawal, G.K.2
Durek, P.3
Neigenfind, J.4
Schulze, W.5
Walther, D.6
Rakwal, R.7
-
12
-
-
76649083593
-
Quantitative proteomics by metabolic labeling of model organisms
-
Gouw, J. W., Krijgsveld, J., and Heck, A. J. (2010) Quantitative proteomics by metabolic labeling of model organisms. Mol. Cell. Proteomics 9, 11-24
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 11-24
-
-
Gouw, J.W.1
Krijgsveld, J.2
Heck, A.J.3
-
13
-
-
36549015311
-
Metabolic labeling of plant cell cultures with K(15)NO3 as a tool for quantitative analysis of proteins and metabolites
-
Engelsberger, W. R., Erban, A., Kopka, J., and Schulze, W. X. (2006) Metabolic labeling of plant cell cultures with K(15)NO3 as a tool for quantitative analysis of proteins and metabolites. Plant Methods 2, 14
-
(2006)
Plant Methods
, vol.2
, pp. 14
-
-
Engelsberger, W.R.1
Erban, A.2
Kopka, J.3
Schulze, W.X.4
-
14
-
-
33947409609
-
15N-Metabolic labeling for comparative plasma membrane proteomics in Arabidopsis cells
-
15N-Metabolic labeling for comparative plasma membrane proteomics in Arabidopsis cells. Proteomics 7, 750-754
-
(2007)
Proteomics
, vol.7
, pp. 750-754
-
-
Lanquar, V.1
Kuhn, L.2
Lelièvre, F.3
Khafif, M.4
Espagne, C.5
Bruley, C.6
Barbier-Brygoo, H.7
Garin, J.8
Thomine, S.9
-
16
-
-
34249650777
-
Comparison of full versus partial metabolic labelling for quantitative proteomics analysis in Arabidopsis thaliana
-
DOI 10.1074/mcp.M600347-MCP200
-
Huttlin, E. L., Hegeman, A. D., Harms, A. C., and Sussman, M. R. (2007) Comparison of full versus partial metabolic labeling for quantitative proteomics analysis in Arabidopsis thaliana. Mol. Cell. Proteomics 6, 860-881 (Pubitemid 46831937)
-
(2007)
Molecular and Cellular Proteomics
, vol.6
, Issue.5
, pp. 860-881
-
-
Huttlin, E.L.1
Hegeman, A.D.2
Harms, A.C.3
Sussman, M.R.4
-
17
-
-
35348939574
-
15N-labeling, MASCOT, and the trans-proteomic pipeline
-
15N-labeling, MASCOT, and the trans-proteomic pipeline. Proteomics 7, 3462-3469
-
(2007)
Proteomics
, vol.7
, pp. 3462-3469
-
-
Palmblad, M.1
Bindschedler, L.V.2
Cramer, R.3
-
18
-
-
45649083365
-
Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study
-
Bindschedler, L. V., Palmblad, M., and Cramer, R. (2008) Hydroponic isotope labelling of entire plants (HILEP) for quantitative plant proteomics; an oxidative stress case study. Phytochemistry 69, 1962-1972
-
(2008)
Phytochemistry
, vol.69
, pp. 1962-1972
-
-
Bindschedler, L.V.1
Palmblad, M.2
Cramer, R.3
-
19
-
-
77957682118
-
In planta changes in protein phosphorylation induced by the plant hormone abscisic acid
-
Kline, K. G., Barrett-Wilt, G. A., and Sussman, M. R. (2010) In planta changes in protein phosphorylation induced by the plant hormone abscisic acid. Proc. Natl. Acad. Sci. U.S.A. 107, 15986-15991
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 15986-15991
-
-
Kline, K.G.1
Barrett-Wilt, G.A.2
Sussman, M.R.3
-
20
-
-
0036802359
-
Auxin-mediated cell cycle activation during early lateral root initiation
-
DOI 10.1105/tpc.004960
-
Himanen, K., Boucheron, E., Vanneste, S., de Almeida Engler, J., Inzé, D., and Beeckman, T. (2002) Auxin-mediated cell cycle activation during early lateral root initiation. Plant Cell 14, 2339-2351 (Pubitemid 35224836)
-
(2002)
Plant Cell
, vol.14
, Issue.10
, pp. 2339-2351
-
-
Himanen, K.1
Boucheron, E.2
Vanneste, S.3
De Almeida, E.J.4
Inze, D.5
Beeckman, T.6
-
21
-
-
0033601101
-
An auxin-dependent distal organizer of pattern and polarity in the Arabidopsis root
-
Sabatini, S., Beis, D., Wolkenfelt, H., Murfett, J., Guilfoyle, T., Malamy, J., Benfey, P., Leyser, O., Bechtold, N., Weisbeek, P., and Scheres, B. (1999) An auxin-dependent distal organizer of pattern and polarity in the Arabidopsis root. Cell 99, 463-472
-
(1999)
Cell
, vol.99
, pp. 463-472
-
-
Sabatini, S.1
Beis, D.2
Wolkenfelt, H.3
Murfett, J.4
Guilfoyle, T.5
Malamy, J.6
Benfey, P.7
Leyser, O.8
Bechtold, N.9
Weisbeek, P.10
Scheres, B.11
-
22
-
-
19544386804
-
The Arabidopsis F-box protein TIR1 is an auxin receptor
-
DOI 10.1038/nature03542
-
Kepinski, S., and Leyser, O. (2005) The Arabidopsis F-box protein TIR1 is an auxin receptor. Nature 435, 446-451 (Pubitemid 40734236)
-
(2005)
Nature
, vol.435
, Issue.7041
, pp. 446-451
-
-
Kepinski, S.1
Leyser, O.2
-
23
-
-
19544379019
-
The F-box protein TIR1 is an auxin receptor
-
DOI 10.1038/nature03543
-
Dharmasiri, N., Dharmasiri, S., and Estelle, M. (2005) The F-box protein TIR1 is an auxin receptor. Nature 435, 441-445 (Pubitemid 40734235)
-
(2005)
Nature
, vol.435
, Issue.7041
, pp. 441-445
-
-
Dharmasiri, N.1
Dharmasiri, S.2
Estelle, M.3
-
24
-
-
33750361422
-
Auxin in action: Signalling, transport and the control of plant growth and development
-
DOI 10.1038/nrm2020, PII NRM2020
-
Teale, W. D., Paponov, I. A., and Palme, K. (2006) Auxin in action: signalling, transport, and the control of plant growth and development. Nat. Rev. Mol. Cell Biol. 7, 847-859 (Pubitemid 44627478)
-
(2006)
Nature Reviews Molecular Cell Biology
, vol.7
, Issue.11
, pp. 847-859
-
-
Teale, W.D.1
Paponov, I.A.2
Palme, K.3
-
26
-
-
34548423185
-
Arabidopsis JACKDAW and MAGPIE zinc finger proteins delimit asymmetric cell division and stabilize tissue boundaries by restricting SHORT-ROOT action
-
DOI 10.1101/gad.440307
-
Welch, D., Hassan, H., Blilou, I., Immink, R., Heidstra, R., and Scheres, B. (2007) Arabidopsis JACKDAW and MAGPIE zinc finger proteins delimit asymmetric cell division and stabilize tissue boundaries by restricting SHORT-ROOT action. Genes Dev. 21, 2196-2204 (Pubitemid 47360841)
-
(2007)
Genes and Development
, vol.21
, Issue.17
, pp. 2196-2204
-
-
Welch, D.1
Hassan, H.2
Blilou, I.3
Immink, R.4
Heidstra, R.5
Scheres, B.6
-
27
-
-
67649756366
-
Arabidopsis lateral root development: An emerging story
-
Péret, B., De Rybel, B., Casimiro, I., Benková, E., Swarup, R., Laplaze, L., Beeckman, T., and Bennett, M. J. (2009) Arabidopsis lateral root development: an emerging story. Trends Plant Sci. 14, 399-408
-
(2009)
Trends Plant Sci.
, vol.14
, pp. 399-408
-
-
Péret, B.1
De Rybel, B.2
Casimiro, I.3
Benková, E.4
Swarup, R.5
Laplaze, L.6
Beeckman, T.7
Bennett, M.J.8
-
28
-
-
77957829871
-
A novel aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity
-
De Rybel, B., Vassileva, V., Parizot, B., Demeulenaere, M., Grunewald, W., Audenaert, D., Van Campenhout, J., Overvoorde, P., Jansen, L., Vanneste, S., Möller, B., Wilson, M., Holman, T., Van Isterdael, G., Brunoud, G., Vuylsteke, M., Vernoux, T., De Veylder, L., Inzé, D., Weijers, D., Bennett, M. J., and Beeckman, T. (2010) A novel aux/IAA28 signaling cascade activates GATA23-dependent specification of lateral root founder cell identity. Curr. Biol. 20, 1697-1706
-
(2010)
Curr. Biol.
, vol.20
, pp. 1697-1706
-
-
De Rybel, B.1
Vassileva, V.2
Parizot, B.3
Demeulenaere, M.4
Grunewald, W.5
Audenaert, D.6
Van Campenhout, J.7
Overvoorde, P.8
Jansen, L.9
Vanneste, S.10
Möller, B.11
Wilson, M.12
Holman, T.13
Van Isterdael, G.14
Brunoud, G.15
Vuylsteke, M.16
Vernoux, T.17
De Veylder, L.18
Inzé, D.19
Weijers, D.20
Bennett, M.J.21
Beeckman, T.22
more..
-
29
-
-
0035028361
-
Auxin transport promotes arabidopsis lateral root initiation
-
DOI 10.1105/tpc.13.4.843
-
Casimiro, I., Marchant, A., Bhalerao, R. P., Beeckman, T., Dhooge, S., Swarup, R., Graham, N., Inzé, D., Sandberg, G., Casero, P. J., and Bennett, M. (2001) Auxin transport promotes Arabidopsis lateral root initiation. Plant Cell 13, 843-852 (Pubitemid 32375905)
-
(2001)
Plant Cell
, vol.13
, Issue.4
, pp. 843-852
-
-
Casimiro, I.1
Marchant, A.2
Bhalerao, R.P.3
Beeckman, T.4
Dhooge, S.5
Swarup, R.6
Graham, N.7
Inze, D.8
Sandberg, G.9
Casero, P.J.10
Bennett, M.11
-
30
-
-
27744537609
-
Cell cycle progression in the pericycle is not sufficient for SOLITARY ROOT/IAA14-mediated lateral root initiation in Arabidopsis thaliana
-
Vanneste, S., De Rybel, B., Beemster, G. T., Ljung, K., De Smet, I., Van Isterdael, G., Naudts, M., Iida, R., Gruissem, W., Tasaka, M., Inzé, D., Fukaki, H., and Beeckman, T. (2005) Cell cycle progression in the pericycle is not sufficient for SOLITARY ROOT/IAA14-mediated lateral root initiation in Arabidopsis thaliana. Plant Cell 17, 3035-3050
-
(2005)
Plant Cell
, vol.17
, pp. 3035-3050
-
-
Vanneste, S.1
De Rybel, B.2
Beemster, G.T.3
Ljung, K.4
De Smet, I.5
Van Isterdael, G.6
Naudts, M.7
Iida, R.8
Gruissem, W.9
Tasaka, M.10
Inzé, D.11
Fukaki, H.12
Beeckman, T.13
-
31
-
-
54949094345
-
Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root
-
De Smet, I., Vassileva, V., De Rybel, B., Levesque, M. P., Grunewald, W., Van Damme, D., Van Noorden, G., Naudts, M., Van Isterdael, G., De Clercq, R., Wang, J. Y., Meuli, N., Vanneste, S., Friml, J., Hilson, P., Jürgens, G., Ingram, G. C., Inzé, D., Benfey, P. N., and Beeckman, T. (2008) Receptor-like kinase ACR4 restricts formative cell divisions in the Arabidopsis root. Science 322, 594-597
-
(2008)
Science
, vol.322
, pp. 594-597
-
-
De Smet, I.1
Vassileva, V.2
De Rybel, B.3
Levesque, M.P.4
Grunewald, W.5
Van Damme, D.6
Van Noorden, G.7
Naudts, M.8
Van Isterdael, G.9
De Clercq, R.10
Wang, J.Y.11
Meuli, N.12
Vanneste, S.13
Friml, J.14
Hilson, P.15
Jürgens, G.16
Ingram, G.C.17
Inzé, D.18
Benfey, P.N.19
Beeckman, T.20
more..
-
32
-
-
33748423078
-
AtSNX1 defines an endosome for auxin-carrier trafficking in Arabidopsis
-
DOI 10.1038/nature05046, PII NATURE05046
-
Jaillais, Y., Fobis-Loisy, I., Miège, C., Rollin, C., and Gaude, T. (2006) AtSNX1 defines an endosome for auxin-carrier trafficking in Arabidopsis. Nature 443, 106-109 (Pubitemid 44344057)
-
(2006)
Nature
, vol.443
, Issue.7107
, pp. 106-109
-
-
Jaillais, Y.1
Fobis-Loisy, I.2
Miege, C.3
Rollin, C.4
Gaude, T.5
-
33
-
-
66349106471
-
Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach
-
Gauci, S., Helbig, A. O., Slijper, M., Krijgsveld, J., Heck, A. J., and Mohammed, S. (2009) Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach. Anal. Chem. 81, 4493-4501
-
(2009)
Anal. Chem.
, vol.81
, pp. 4493-4501
-
-
Gauci, S.1
Helbig, A.O.2
Slijper, M.3
Krijgsveld, J.4
Heck, A.J.5
Mohammed, S.6
-
34
-
-
52649181646
-
Automated online sequential isotope labeling for protein quantitation applied to proteasome tissue-specific diversity
-
Raijmakers, R., Berkers, C. R., de Jong, A., Ovaa, H., Heck, A. J., and Mohammed, S. (2008) Automated online sequential isotope labeling for protein quantitation applied to proteasome tissue-specific diversity. Mol. Cell. Proteomics 7, 1755-1762
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 1755-1762
-
-
Raijmakers, R.1
Berkers, C.R.2
De Jong, A.3
Ovaa, H.4
Heck, A.J.5
Mohammed, S.6
-
35
-
-
79952366305
-
RockerBox: Analysis and filtering of massive proteomics search results
-
van den Toorn, H. W., Muñoz, J., Mohammed, S., Raijmakers, R., Heck, A. J., and van Breukelen, B. (2011) RockerBox: analysis and filtering of massive proteomics search results. J. Proteome Res. 10, 1420-1424
-
(2011)
J. Proteome Res.
, vol.10
, pp. 1420-1424
-
-
Van Den Toorn, H.W.1
Muñoz, J.2
Mohammed, S.3
Raijmakers, R.4
Heck, A.J.5
Van Breukelen, B.6
-
36
-
-
73649131275
-
MSQuant, an open source platform for mass spectrometry-based quantitative proteomics
-
Mortensen, P., Gouw, J. W., Olsen, J. V., Ong, S. E., Rigbolt, K. T., Bunkenborg, J., Cox, J., Foster, L. J., Heck, A. J., Blagoev, B., Andersen, J. S., and Mann, M. (2010) MSQuant, an open source platform for mass spectrometry-based quantitative proteomics. J. Proteome Res. 9, 393-403
-
(2010)
J. Proteome Res.
, vol.9
, pp. 393-403
-
-
Mortensen, P.1
Gouw, J.W.2
Olsen, J.V.3
Ong, S.E.4
Rigbolt, K.T.5
Bunkenborg, J.6
Cox, J.7
Foster, L.J.8
Heck, A.J.9
Blagoev, B.10
Andersen, J.S.11
Mann, M.12
-
37
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox, J., and Mann, M. (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol. 26, 1367-1372
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
38
-
-
84855524689
-
Targeted quantitative phosphoproteomics approach for the detection of phosphotyrosine signaling in plants
-
Mithoe, S. C., Boersema, P. J., Berke, L., Snel, B., Heck, A. J., and Menke, F. L. (2012) Targeted quantitative phosphoproteomics approach for the detection of phosphotyrosine signaling in plants. J. Proteome Res. 11, 438-448
-
(2012)
J. Proteome Res.
, vol.11
, pp. 438-448
-
-
Mithoe, S.C.1
Boersema, P.J.2
Berke, L.3
Snel, B.4
Heck, A.J.5
Menke, F.L.6
-
39
-
-
75549090366
-
PhosPhAt: The Arabidopsis thaliana phosphorylation site database. An update
-
Durek, P., Schmidt, R., Heazlewood, J. L., Jones, A., MacLean, D., Nagel, A., Kersten, B., and Schulze, W. X. (2010) PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update. Nucleic Acids Res. 38, D828-D834
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Durek, P.1
Schmidt, R.2
Heazlewood, J.L.3
Jones, A.4
MacLean, D.5
Nagel, A.6
Kersten, B.7
Schulze, W.X.8
-
40
-
-
79952531916
-
pep2pro: A new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana
-
Baerenfaller, K., Hirsch-Hoffmann, M., Svozil, J., Hull, R., Russenberger, D., Bischof, S., Lu, Q., Gruissem, W., and Baginsky, S. (2011) pep2pro: a new tool for comprehensive proteome data analysis to reveal information about organ-specific proteomes in Arabidopsis thaliana. Integr. Biol. 3, 225-237
-
(2011)
Integr. Biol.
, vol.3
, pp. 225-237
-
-
Baerenfaller, K.1
Hirsch-Hoffmann, M.2
Svozil, J.3
Hull, R.4
Russenberger, D.5
Bischof, S.6
Lu, Q.7
Gruissem, W.8
Baginsky, S.9
-
41
-
-
0034304056
-
Technical advance: An estrogen receptor-based transactivator XVE mediates highly inducible gene expression in transgenic plants
-
Zuo, J., Niu, Q. W., and Chua, N. H. (2000) Technical advance: An estrogen receptor-based transactivator XVE mediates highly inducible gene expression in transgenic plants. Plant J. 24, 265-273
-
(2000)
Plant J.
, vol.24
, pp. 265-273
-
-
Zuo, J.1
Niu, Q.W.2
Chua, N.H.3
-
42
-
-
77951996967
-
VisuaLRTC: A new view on lateral root initiation by combining specific transcriptome datasets
-
Parizot, B., De Rybel, B., and Beeckman, T. (2010) VisuaLRTC: a new view on lateral root initiation by combining specific transcriptome datasets. Plant Physiol. 153, 34-40
-
(2010)
Plant Physiol.
, vol.153
, pp. 34-40
-
-
Parizot, B.1
De Rybel, B.2
Beeckman, T.3
-
43
-
-
84984933087
-
The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry
-
Villén, J., and Gygi, S. P. (2008) The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry. Nat. Protoc. 3, 1630-1638
-
(2008)
Nat. Protoc.
, vol.3
, pp. 1630-1638
-
-
Villén, J.1
Gygi, S.P.2
-
44
-
-
79551536399
-
Strong cation exchange (SCX)-based analytical methods for the targeted analysis of protein post-translational modifications
-
Mohammed, S., and Heck, A. J. (2011) Strong cation exchange (SCX)-based analytical methods for the targeted analysis of protein post-translational modifications. Curr. Opin. Biotechnol., 22(1), 9-16
-
(2011)
Curr. Opin. Biotechnol.
, vol.22
, Issue.1
, pp. 9-16
-
-
Mohammed, S.1
Heck, A.J.2
-
45
-
-
33750456519
-
Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks
-
DOI 10.1016/j.cell.2006.09.026, PII S0092867406012748
-
Olsen, J. V., Blagoev, B., Gnad, F., Macek, B., Kumar, C., Mortensen, P., and Mann, M. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell 127, 635-648 (Pubitemid 44647421)
-
(2006)
Cell
, vol.127
, Issue.3
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
Macek, B.4
Kumar, C.5
Mortensen, P.6
Mann, M.7
-
47
-
-
65649154049
-
StatQuant: A post-quantification analysis toolbox for improving quantitative mass spectrometry
-
van Breukelen, B., van den Toorn, H. W., Drugan, M. M., and Heck, A. J. (2009) StatQuant: a post-quantification analysis toolbox for improving quantitative mass spectrometry. Bioinformatics 25, 1472-1473
-
(2009)
Bioinformatics
, vol.25
, pp. 1472-1473
-
-
Van Breukelen, B.1
Van Den Toorn, H.W.2
Drugan, M.M.3
Heck, A.J.4
-
48
-
-
22044451183
-
Characterization of an arabidopsis enzyme family that conjugates amino acids to indole-3-acetic acid
-
DOI 10.1105/tpc.104.026690
-
Staswick, P. E., Serban, B., Rowe, M., Tiryaki, I., Maldonado, M. T., Maldonado, M. C., and Suza, W. (2005) Characterization of an Arabidopsis enzyme family that conjugates amino acids to indole-3-acetic acid. Plant Cell 17, 616-627 (Pubitemid 41672979)
-
(2005)
Plant Cell
, vol.17
, Issue.2
, pp. 616-627
-
-
Staswick, P.E.1
Serban, B.2
Rowe, M.3
Tiryaki, I.4
Maldonado, M.T.5
Maldonado, M.C.6
Suza, W.7
-
50
-
-
84860576195
-
Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots
-
Lan, P., Li, W., Wen, T. N., and Schmidt, W. (2012) Quantitative phosphoproteome profiling of iron-deficient Arabidopsis roots. Plant Physiol. 159, 403-417
-
(2012)
Plant Physiol.
, vol.159
, pp. 403-417
-
-
Lan, P.1
Li, W.2
Wen, T.N.3
Schmidt, W.4
-
51
-
-
77149125918
-
Subcellular trafficking of PIN auxin efflux carriers in auxin transport
-
Friml, J. (2010) Subcellular trafficking of PIN auxin efflux carriers in auxin transport. Eur. J. Cell Biol. 89, 231-235
-
(2010)
Eur. J. Cell Biol.
, vol.89
, pp. 231-235
-
-
Friml, J.1
-
52
-
-
56649100703
-
Differential degradation of PIN2 auxin efflux carrier by retromer-dependent vacuolar targeting
-
Kleine-Vehn, J., Leitner, J., Zwiewka, M., Sauer, M., Abas, L., Luschnig, C., and Friml, J. (2008) Differential degradation of PIN2 auxin efflux carrier by retromer-dependent vacuolar targeting. Proc. Natl. Acad. Sci. U.S.A. 105, 17812-17817
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 17812-17817
-
-
Kleine-Vehn, J.1
Leitner, J.2
Zwiewka, M.3
Sauer, M.4
Abas, L.5
Luschnig, C.6
Friml, J.7
-
53
-
-
64949182165
-
Post-transcriptional regulation of auxin transport proteins: Cellular trafficking, protein phosphorylation, protein maturation, ubiquitination, and membrane composition
-
Titapiwatanakun, B., and Murphy, A. S. (2009) Post-transcriptional regulation of auxin transport proteins: cellular trafficking, protein phosphorylation, protein maturation, ubiquitination, and membrane composition. J. Exp. Bot. 60, 1093-1107
-
(2009)
J. Exp. Bot.
, vol.60
, pp. 1093-1107
-
-
Titapiwatanakun, B.1
Murphy, A.S.2
-
54
-
-
34547688806
-
Mutations in Arabidopsis Multidrug Resistance-Like ABC transporters separate the roles of acropetal and basipetal auxin transport in lateral root development
-
DOI 10.1105/tpc.106.048777
-
Wu, G., Lewis, D. R., and Spalding, E. P. (2007) Mutations in Arabidopsis multidrug resistance-like ABC transporters separate the roles of acropetal and basipetal auxin transport in lateral root development. Plant Cell 19, 1826-1837 (Pubitemid 47218843)
-
(2007)
Plant Cell
, vol.19
, Issue.6
, pp. 1826-1837
-
-
Wu, G.1
Lewis, D.R.2
Spalding, E.P.3
-
55
-
-
34547658955
-
Separating the roles of acropetal and basipetal auxin transport on gravitropism with mutations in two arabidopsis multidrug resistance-like ABC transporter genes
-
DOI 10.1105/tpc.107.051599
-
Lewis, D. R., Miller, N. D., Splitt, B. L., Wu, G., and Spalding, E. P. (2007) Separating the roles of acropetal and basipetal auxin transport on gravitropism with mutations in two Arabidopsis multidrug resistance-like ABC transporter genes. Plant Cell 19, 1838-1850 (Pubitemid 47218844)
-
(2007)
Plant Cell
, vol.19
, Issue.6
, pp. 1838-1850
-
-
Lewis, D.R.1
Miller, N.D.2
Splitt, B.L.3
Wu, G.4
Spalding, E.P.5
-
56
-
-
66649127498
-
Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks
-
Reiland, S., Messerli, G., Baerenfaller, K., Gerrits, B., Endler, A., Grossmann, J., Gruissem, W., and Baginsky, S. (2009) Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks. Plant Physiol. 150, 889-903
-
(2009)
Plant Physiol.
, vol.150
, pp. 889-903
-
-
Reiland, S.1
Messerli, G.2
Baerenfaller, K.3
Gerrits, B.4
Endler, A.5
Grossmann, J.6
Gruissem, W.7
Baginsky, S.8
-
57
-
-
4544291080
-
Phosphoproteomics of the arabidopsis plasma membrane and a new phosphorylation site database W inside box sign
-
DOI 10.1105/tpc.104.023150
-
Nühse, T. S., Stensballe, A., Jensen, O. N., and Peck, S. C. (2004) Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database. Plant Cell 16, 2394-2405 (Pubitemid 39247080)
-
(2004)
Plant Cell
, vol.16
, Issue.9
, pp. 2394-2405
-
-
Nuhse, T.S.1
Stensballe, A.2
Jensen, O.N.3
Peck, S.C.4
-
58
-
-
34548128405
-
Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses
-
DOI 10.1111/j.1365-313X.2007.03192.x
-
Nühse, T. S., Bottrill, A. R., Jones, A. M., and Peck, S. C. (2007) Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses. Plant J. 51, 931-940 (Pubitemid 47301663)
-
(2007)
Plant Journal
, vol.51
, Issue.5
, pp. 931-940
-
-
Nuhse, T.S.1
Bottrill, A.R.2
Jones, A.M.E.3
Peck, S.C.4
-
59
-
-
20444466570
-
Proteomic characterization of evolutionarily conserved and variable proteins of arabidopsis cytosolic ribosomes
-
DOI 10.1104/pp.104.053637
-
Chang, I. F., Szick-Miranda, K., Pan, S., and Bailey-Serres, J. (2005) Proteomic characterization of evolutionarily conserved and variable proteins of Arabidopsis cytosolic ribosomes. Plant Physiol. 137, 848-862 (Pubitemid 43138157)
-
(2005)
Plant Physiology
, vol.137
, Issue.3
, pp. 848-862
-
-
Chang, I.-F.1
Szick-Miranda, K.2
Pan, S.3
Bailey-Serres, J.4
-
60
-
-
0040389673
-
AtPIN2 defines a locus of Arabidopsis for root gravitropism control
-
Müller, A., Guan, C., Gälweiler, L., Tänzler, P., Huijser, P., Marchant, A., Parry, G., Bennett, M., Wisman, E., and Palme, K. (1998) AtPIN2 defines a locus of Arabidopsis for root gravitropism control. EMBO J. 17, 6903-6911 (Pubitemid 28550284)
-
(1998)
EMBO Journal
, vol.17
, Issue.23
, pp. 6903-6911
-
-
Muller, A.1
Guan, C.2
Galweiler, L.3
Tanzler, P.4
Huijser, P.5
Marchant, A.6
Parry, G.7
Bennett, M.8
Wisman, E.9
Palme, K.10
-
61
-
-
58149153143
-
Root system architecture from coupling cell shape to auxin transport
-
Laskowski, M., Grieneisen, V. A., Hofhuis, H., Hove, C. A., Hogeweg, P., Marée, A. F., and Scheres, B. (2008) Root system architecture from coupling cell shape to auxin transport. PLoS Biol. 6, e307
-
(2008)
PLoS Biol.
, vol.6
-
-
Laskowski, M.1
Grieneisen, V.A.2
Hofhuis, H.3
Hove, C.A.4
Hogeweg, P.5
Marée, A.F.6
Scheres, B.7
-
62
-
-
77956578322
-
Plasma membrane-bound AGC3 kinases phosphorylate PIN auxin carriers at TPRXS(N/S) motifs to direct apical PIN recycling
-
Dhonukshe, P., Huang, F., Galvan-Ampudia, C. S., Mähönen, A. P., Kleine-Vehn, J., Xu, J., Quint, A., Prasad, K., Friml, J., Scheres, B., and Offringa, R. (2010) Plasma membrane-bound AGC3 kinases phosphorylate PIN auxin carriers at TPRXS(N/S) motifs to direct apical PIN recycling. Development 137, 3245-3255
-
(2010)
Development
, vol.137
, pp. 3245-3255
-
-
Dhonukshe, P.1
Huang, F.2
Galvan-Ampudia, C.S.3
Mähönen, A.P.4
Kleine-Vehn, J.5
Xu, J.6
Quint, A.7
Prasad, K.8
Friml, J.9
Scheres, B.10
Offringa, R.11
-
63
-
-
77953218034
-
Phosphorylation of conserved PIN motifs directs Arabidopsis PIN1 polarity and auxin transport
-
Huang, F., Zago, M. K., Abas, L., van Marion, A., Galván-Ampudia, C. S., and Offringa, R. (2010) Phosphorylation of conserved PIN motifs directs Arabidopsis PIN1 polarity and auxin transport. Plant Cell 22, 1129-1142
-
(2010)
Plant Cell
, vol.22
, pp. 1129-1142
-
-
Huang, F.1
Zago, M.K.2
Abas, L.3
Van Marion, A.4
Galván-Ampudia, C.S.5
Offringa, R.6
-
64
-
-
76249120180
-
PIN phosphorylation is sufficient to mediate PIN polarity and direct auxin transport
-
Zhang, J., Nodzynski, T., Pencík, A., Rolcík, J., and Friml, J. (2010) PIN phosphorylation is sufficient to mediate PIN polarity and direct auxin transport. Proc. Natl. Acad. Sci. U.S.A. 107, 918-922
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 918-922
-
-
Zhang, J.1
Nodzynski, T.2
Pencík, A.3
Rolcík, J.4
Friml, J.5
-
65
-
-
22044442256
-
AUXIN RESPONSE FACTOR 2 (ARF2): A pleiotropic developmental regulator
-
DOI 10.1111/j.1365-313X.2005.02426.x
-
Okushima, Y., Mitina, I., Quach, H. L., and Theologis, A. (2005) AUXIN RESPONSE FACTOR 2 (ARF2): a pleiotropic developmental regulator. Plant J. 43, 29-46 (Pubitemid 40962733)
-
(2005)
Plant Journal
, vol.43
, Issue.1
, pp. 29-46
-
-
Okushima, Y.1
Mitina, I.2
Quach, H.L.3
Theologis, A.4
-
66
-
-
32244447078
-
The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin signalling, cell division, and the size of seeds and other organs
-
DOI 10.1242/dev.02194
-
Schruff, M. C., Spielman, M., Tiwari, S., Adams, S., Fenby, N., and Scott, R. J. (2006) The AUXIN RESPONSE FACTOR 2 gene of Arabidopsis links auxin signalling, cell division, and the size of seeds and other organs. Development 133, 251-261 (Pubitemid 43210714)
-
(2006)
Development
, vol.133
, Issue.2
, pp. 251-261
-
-
Schruff, M.C.1
Spielman, M.2
Tiwari, S.3
Adams, S.4
Fenby, N.5
Scott, R.J.6
-
67
-
-
77953193344
-
miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth
-
Marin, E., Jouannet, V., Herz, A., Lokerse, A. S., Weijers, D., Vaucheret, H., Nussaume, L., Crespi, M. D., and Maizel, A. (2010) miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth. Plant Cell 22, 1104-1117
-
(2010)
Plant Cell
, vol.22
, pp. 1104-1117
-
-
Marin, E.1
Jouannet, V.2
Herz, A.3
Lokerse, A.S.4
Weijers, D.5
Vaucheret, H.6
Nussaume, L.7
Crespi, M.D.8
Maizel, A.9
-
68
-
-
47749136250
-
Integration of auxin and brassinosteroid pathways by Auxin Response Factor 2
-
DOI 10.1073/pnas.0803996105
-
Vert, G., Walcher, C. L., Chory, J., and Nemhauser, J. L. (2008) Integration of auxin and brassinosteroid pathways by Auxin Response Factor 2. Proc. Natl. Acad. Sci. U.S.A. 105, 9829-9834 (Pubitemid 352031385)
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, Issue.28
, pp. 9829-9834
-
-
Vert, G.1
Walcher, C.L.2
Chory, J.3
Nemhauser, J.L.4
-
69
-
-
4344648019
-
Convergence of signaling pathways in the control of differential cell growth in Arabidopsis
-
DOI 10.1016/j.devcel.2004.07.002, PII S1534580704002175
-
Li, H., Johnson, P., Stepanova, A., Alonso, J. M., and Ecker, J. R. (2004) Convergence of signaling pathways in the control of differential cell growth in Arabidopsis. Dev. Cell 7, 193-204 (Pubitemid 39149159)
-
(2004)
Developmental Cell
, vol.7
, Issue.2
, pp. 193-204
-
-
Li, H.1
Johnson, P.2
Stepanova, A.3
Alonso, J.M.4
Ecker, J.R.5
-
70
-
-
0035999461
-
The role of regulated protein degradation in auxin response
-
DOI 10.1023/A:1015203013208
-
Dharmasiri, S., and Estelle, M. (2002) The role of regulated protein degradation in auxin response. Plant Mol. Biol. 49, 401-409 (Pubitemid 34519757)
-
(2002)
Plant Molecular Biology
, vol.49
, Issue.3-4
, pp. 401-409
-
-
Dharmasiri, S.1
Estelle, M.2
-
71
-
-
0028207001
-
Rapamycin selectively represses translation of the "polypyrimidine tract" mRNA family
-
Jefferies, H. B., Reinhard, C., Kozma, S. C., and Thomas, G. (1994) Rapamycin selectively represses translation of the "polypyrimidine tract" mRNA family. Proc. Natl. Acad. Sci. U.S.A. 91, 4441-4445
-
(1994)
Proc. Natl. Acad. Sci. U.S.A.
, vol.91
, pp. 4441-4445
-
-
Jefferies, H.B.1
Reinhard, C.2
Kozma, S.C.3
Thomas, G.4
-
72
-
-
4644301867
-
Regulation of translation and cancer
-
Holland, E. C. (2004) Regulation of translation and cancer. Cell Cycle 3, 452-455
-
(2004)
Cell Cycle
, vol.3
, pp. 452-455
-
-
Holland, E.C.1
-
73
-
-
1942501814
-
Phytohormones participate in an S6 kinase signal transduction pathway in arabidopsis
-
DOI 10.1104/pp.103.035873
-
Turck, F., Zilbermann, F., Kozma, S. C., Thomas, G., and Nagy, F. (2004) Phytohormones participate in an S6 kinase signal transduction pathway in Arabidopsis. Plant Physiol. 134, 1527-1535 (Pubitemid 38527362)
-
(2004)
Plant Physiology
, vol.134
, Issue.4
, pp. 1527-1535
-
-
Turck, F.1
Zilbermann, F.2
Kozma, S.C.3
Thomas, G.4
Nagy, F.5
-
74
-
-
77953231817
-
The two Arabidopsis RPS6 genes, encoding for cytoplasmic ribosomal proteins S6, are functionally equivalent
-
Creff, A., Sormani, R., and Desnos, T. (2010) The two Arabidopsis RPS6 genes, encoding for cytoplasmic ribosomal proteins S6, are functionally equivalent. Plant Mol. Biol. 73, 533-546
-
(2010)
Plant Mol. Biol.
, vol.73
, pp. 533-546
-
-
Creff, A.1
Sormani, R.2
Desnos, T.3
-
75
-
-
20444488003
-
A putative nucleoporin 96 is required for both basal defense and constitutive resistance responses mediated by suppressor of npr1-1, constitutive 1
-
DOI 10.1105/tpc.104.029926
-
Zhang, Y., and Li, X. (2005) A putative nucleoporin 96 is required for both basal defense and constitutive resistance responses mediated by suppressor of npr1-1, constitutive 1. Plant Cell 17, 1306-1316 (Pubitemid 43142144)
-
(2005)
Plant Cell
, vol.17
, Issue.4
, pp. 1306-1316
-
-
Zhang, Y.1
Li, X.2
-
76
-
-
33745803593
-
The Arabidopsis suppressor of auxin resistance proteins are nucleoporins with an important role in hormone signaling and development
-
DOI 10.1105/tpc.106.041566
-
Parry, G., Ward, S., Cernac, A., Dharmasiri, S., and Estelle, M. (2006) The Arabidopsis SUPPRESSOR OF AUXIN RESISTANCE proteins are nucleoporins with an important role in hormone signaling and development. Plant Cell 18, 1590-1603 (Pubitemid 44025545)
-
(2006)
Plant Cell
, vol.18
, Issue.7
, pp. 1590-1603
-
-
Parry, G.1
Ward, S.2
Cernac, A.3
Dharmasiri, S.4
Estelle, M.5
-
77
-
-
0037186599
-
Map kinase signalling cascade in Arabidopsis innate immunity
-
DOI 10.1038/415977a
-
Asai, T., Tena, G., Plotnikova, J., Willmann, M. R., Chiu, W. L., Gomez-Gomez, L., Boller, T., Ausubel, F. M., and Sheen, J. (2002) MAP kinase signalling cascade in Arabidopsis innate immunity. Nature 415, 977-983 (Pubitemid 34193435)
-
(2002)
Nature
, vol.415
, Issue.6875
, pp. 977-983
-
-
Asai, T.1
Tena, G.2
Plotnikova, J.3
Willmann, M.R.4
Chiu, W.-L.5
Gomez-Gomez, L.6
Boller, T.7
Ausubel, F.M.8
Sheen, J.9
-
78
-
-
1842813463
-
Silencing of the mitogen-activated protein kinase MPK6 compromises disease resistance in arabidopsis
-
DOI 10.1105/tpc.015552
-
Menke, F. L., van Pelt, J. A., Pieterse, C. M., and Klessig, D. F. (2004) Silencing of the mitogen-activated protein kinase MPK6 compromises disease resistance in Arabidopsis. Plant Cell 16, 897-907 (Pubitemid 38459210)
-
(2004)
Plant Cell
, vol.16
, Issue.4
, pp. 897-907
-
-
Menke, F.L.H.1
Van Pelt, J.A.2
Pieterse, C.M.J.3
Klessig, D.F.4
-
79
-
-
77952478526
-
Mitogen-activated protein kinase signaling in plants
-
Rodriguez, M. C., Petersen, M., and Mundy, J. (2010) Mitogen-activated protein kinase signaling in plants. Annu. Rev. Plant Biol. 61, 621-649
-
(2010)
Annu. Rev. Plant Biol.
, vol.61
, pp. 621-649
-
-
Rodriguez, M.C.1
Petersen, M.2
Mundy, J.3
-
80
-
-
0034489787
-
Auxin induces mitogenic activated protein kinase (MAPK) activation in roots of Arabidopsis seedlings
-
DOI 10.1046/j.1365-313X.2000.00921.x
-
Mockaitis, K., and Howell, S. H. (2000) Auxin induces mitogenic activated protein kinase (MAPK) activation in roots of Arabidopsis seedlings. Plant J. 24, 785-796 (Pubitemid 32100476)
-
(2000)
Plant Journal
, vol.24
, Issue.6
, pp. 785-796
-
-
Mockaitis, K.1
Howell, S.H.2
-
81
-
-
0038714319
-
Mitogen-activated protein kinase cascades in plants: A new nomenclature
-
MAPK Group
-
MAPK Group (2002) Mitogen-activated protein kinase cascades in plants: a new nomenclature. Trends Plant Sci. 7, 301-308
-
(2002)
Trends Plant Sci.
, vol.7
, pp. 301-308
-
-
|