메뉴 건너뛰기




Volumn 25, Issue 8, 2013, Pages 2798-2812

Parallel proteomic and phosphoproteomic analyses of successive stages of maize leaf development

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS THALIANA; ZEA MAYS;

EID: 84884688563     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.113.112227     Document Type: Article
Times cited : (85)

References (48)
  • 3
    • 0002986778 scopus 로고    scopus 로고
    • B.B. Buchanan, W. Gruissem, and R.L. Jones, eds (Waldorf, MD: American Society of Plant Physiologists)
    • Carpita, N., and McCann, M. (2000). The Cell Wall. In Biochemistry and Molecular Biology of Plants, B.B. Buchanan, W. Gruissem, and R.L. Jones, eds (Waldorf, MD: American Society of Plant Physiologists), pp. 52-109.
    • (2000) The Cell Wall. In Biochemistry and Molecular Biology of Plants , pp. 52-109
    • Carpita, N.1    McCann, M.2
  • 4
    • 33748792269 scopus 로고    scopus 로고
    • ZmPIN1a and ZmPIN1b encode two novel putative candidates for polar auxin transport and plant architecture determination of maize
    • Carraro, N., Forestan, C., Canova, S., Traas, J., and Varotto, S. (2006). ZmPIN1a and ZmPIN1b encode two novel putative candidates for polar auxin transport and plant architecture determination of maize. Plant Physiol. 142: 254-264.
    • (2006) Plant Physiol. , vol.142 , pp. 254-264
    • Carraro, N.1    Forestan, C.2    Canova, S.3    Traas, J.4    Varotto, S.5
  • 5
    • 59149098402 scopus 로고    scopus 로고
    • PAN1: A receptor-like protein that promotes polarization of an asymmetric cell division in maize
    • Cartwright, H.N., Humphries, J.A., and Smith, L.G. (2009). PAN1: A receptor-like protein that promotes polarization of an asymmetric cell division in maize. Science 323: 649-651.
    • (2009) Science , vol.323 , pp. 649-651
    • Cartwright, H.N.1    Humphries, J.A.2    Smith, L.G.3
  • 6
    • 84860879590 scopus 로고    scopus 로고
    • Modification site localization scoring: Strategies and performance
    • Chalkley, R.J., and Clauser, K.R. (2012). Modification site localization scoring: Strategies and performance. Mol. Cell. Proteomics 11: 3-14.
    • (2012) Mol. Cell. Proteomics , vol.11 , pp. 3-14
    • Chalkley, R.J.1    Clauser, K.R.2
  • 7
    • 78049243938 scopus 로고    scopus 로고
    • Mutations of cellulose synthase (CESA1) phosphorylation sites modulate anisotropic cell expansion and bidirectional mobility of cellulose synthase
    • Chen, S., Ehrhardt, D.W., and Somerville, C.R. (2010). Mutations of cellulose synthase (CESA1) phosphorylation sites modulate anisotropic cell expansion and bidirectional mobility of cellulose synthase. Proc. Natl. Acad. Sci. USA 107: 17188-17193.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 17188-17193
    • Chen, S.1    Ehrhardt, D.W.2    Somerville, C.R.3
  • 10
    • 33750699996 scopus 로고    scopus 로고
    • Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors
    • Florens, L., Carozza, M.J., Swanson, S.K., Fournier, M., Coleman, M.K., Workman, J.L., and Washburn, M.P. (2006). Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors. Methods 40: 303-311.
    • (2006) Methods , vol.40 , pp. 303-311
    • Florens, L.1    Carozza, M.J.2    Swanson, S.K.3    Fournier, M.4    Coleman, M.K.5    Workman, J.L.6    Washburn, M.P.7
  • 11
    • 53749083891 scopus 로고    scopus 로고
    • The relationship between auxin transport and maize branching
    • Gallavotti, A., Yang, Y., Schmidt, R.J., and Jackson, D. (2008). The relationship between auxin transport and maize branching. Plant Physiol. 147: 1913-1923.
    • (2008) Plant Physiol. , vol.147 , pp. 1913-1923
    • Gallavotti, A.1    Yang, Y.2    Schmidt, R.J.3    Jackson, D.4
  • 12
    • 84865489447 scopus 로고    scopus 로고
    • Functional identification of the phosphorylation sites of Arabidopsis PIN-FORMED3 for its subcellular localization and biological role
    • Ganguly, A., Lee, S.-H., and Cho, H.-T. (2012). Functional identification of the phosphorylation sites of Arabidopsis PIN-FORMED3 for its subcellular localization and biological role. Plant J. 71: 810-823.
    • (2012) Plant J. , vol.71 , pp. 810-823
    • Ganguly, A.1    Lee, S.-H.2    Cho, H.-T.3
  • 13
    • 0037795741 scopus 로고    scopus 로고
    • Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
    • Gerber, S.A., Rush, J., Stemman, O., Kirschner, M.W., and Gygi, S.P. (2003). Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc. Natl. Acad. Sci. USA 100: 6940-6945.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 6940-6945
    • Gerber, S.A.1    Rush, J.2    Stemman, O.3    Kirschner, M.W.4    Gygi, S.P.5
  • 14
    • 0033016717 scopus 로고    scopus 로고
    • Correlation between protein and mRNA abundance in yeast
    • Gygi, S.P., Rochon, Y., Franza, B.R., and Aebersold, R. (1999). Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol. 19: 1720-1730.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 1720-1730
    • Gygi, S.P.1    Rochon, Y.2    Franza, B.R.3    Aebersold, R.4
  • 15
    • 38549127781 scopus 로고    scopus 로고
    • PhosPhAt: A database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor
    • DATABASE ISSUE
    • Heazlewood, J.L., Durek, P., Hummel, J., Selbig, J., Weckwerth, W., Walther, D., and Schulze, W.X. (2008). PhosPhAt: A database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Res. 36 (Database issue): D1015-D1021.
    • (2008) Nucleic Acids Res. , vol.36
    • Heazlewood, J.L.1    Durek, P.2    Hummel, J.3    Selbig, J.4    Weckwerth, W.5    Walther, D.6    Schulze, W.X.7
  • 16
    • 77953218034 scopus 로고    scopus 로고
    • Phosphorylation of conserved PIN motifs directs Arabidopsis PIN1 polarity and auxin transport
    • Huang, F., Zago, M.K., Abas, L., van Marion, A., Galván-Ampudia, C.S., and Offringa, R. (2010). Phosphorylation of conserved PIN motifs directs Arabidopsis PIN1 polarity and auxin transport. Plant Cell 22: 1129-1142.
    • (2010) Plant Cell , vol.22 , pp. 1129-1142
    • Huang, F.1    Zago, M.K.2    Abas, L.3    van Marion, A.4    Galván-Ampudia, C.S.5    Offringa, R.6
  • 19
    • 54049090766 scopus 로고    scopus 로고
    • Selected reaction monitoring for quantitative proteomics: A tutorial
    • Lange, V., Picotti, P., Domon, B., and Aebersold, R. (2008). Selected reaction monitoring for quantitative proteomics: A tutorial. Mol. Syst. Biol. 4: 222.
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 222
    • Lange, V.1    Picotti, P.2    Domon, B.3    Aebersold, R.4
  • 20
    • 78649488563 scopus 로고    scopus 로고
    • The developmental dynamics of the maize leaf transcriptome
    • Li, P., et al. (2010). The developmental dynamics of the maize leaf transcriptome. Nat. Genet. 42: 1060-1067.
    • (2010) Nat. Genet. , vol.42 , pp. 1060-1067
    • Li, P.1
  • 21
    • 3242731195 scopus 로고    scopus 로고
    • A model for random sampling and estimation of relative protein abundance in shotgun proteomics
    • Liu, H., Sadygov, R.G., and Yates, J.R., III., (2004). A model for random sampling and estimation of relative protein abundance in shotgun proteomics. Anal. Chem. 76: 4193-4201.
    • (2004) Anal. Chem. , vol.76 , pp. 4193-4201
    • Liu, H.1    Sadygov, R.G.2    Yates III, J.R.3
  • 22
    • 34247865533 scopus 로고    scopus 로고
    • A chaperone-dependent GSK3beta transitional intermediate mediates activation-loop autophosphorylation
    • Lochhead, P.A., Kinstrie, R., Sibbet, G., Rawjee, T., Morrice, N., and Cleghon, V. (2006). A chaperone-dependent GSK3beta transitional intermediate mediates activation-loop autophosphorylation. Mol. Cell 24: 627-633.
    • (2006) Mol. Cell , vol.24 , pp. 627-633
    • Lochhead, P.A.1    Kinstrie, R.2    Sibbet, G.3    Rawjee, T.4    Morrice, N.5    Cleghon, V.6
  • 23
    • 20444387985 scopus 로고    scopus 로고
    • Activation-loop autophosphorylation is mediated by a novel transitional intermediate form of DYRKs
    • Lochhead, P.A., Sibbet, G., Morrice, N., and Cleghon, V. (2005). Activation-loop autophosphorylation is mediated by a novel transitional intermediate form of DYRKs. Cell 121: 925-936.
    • (2005) Cell , vol.121 , pp. 925-936
    • Lochhead, P.A.1    Sibbet, G.2    Morrice, N.3    Cleghon, V.4
  • 24
    • 0036535975 scopus 로고    scopus 로고
    • Pinning down prolinedirected phosphorylation signaling
    • Lu, K.P., Liou, Y.-C., and Zhou, X.Z. (2002). Pinning down prolinedirected phosphorylation signaling. Trends Cell Biol. 12: 164-172.
    • (2002) Trends Cell Biol. , vol.12 , pp. 164-172
    • Lu, K.P.1    Liou, Y.-C.2    Zhou, X.Z.3
  • 29
    • 33644868495 scopus 로고    scopus 로고
    • Auxin receptors: A new role for F-box proteins
    • Parry, G., and Estelle, M. (2006). Auxin receptors: A new role for F-box proteins. Curr. Opin. Cell Biol. 18: 152-156.
    • (2006) Curr. Opin. Cell Biol. , vol.18 , pp. 152-156
    • Parry, G.1    Estelle, M.2
  • 30
    • 73149106617 scopus 로고    scopus 로고
    • Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis
    • Piques, M., Schulze, W.X., Höhne, M., Usadel, B., Gibon, Y., Rohwer, J., and Stitt, M. (2009). Ribosome and transcript copy numbers, polysome occupancy and enzyme dynamics in Arabidopsis. Mol. Syst. Biol. 5: 314.
    • (2009) Mol. Syst. Biol. , vol.5 , pp. 314
    • Piques, M.1    Schulze, W.X.2    Höhne, M.3    Usadel, B.4    Gibon, Y.5    Rohwer, J.6    Stitt, M.7
  • 31
    • 84867687395 scopus 로고    scopus 로고
    • Processing and subcellular trafficking of ER-tethered EIN2 control response to ethylene gas
    • Qiao, H., Shen, Z., Huang, S.S., Schmitz, R.J., Urich, M.A., Briggs, S.P., and Ecker, J.R. (2012). Processing and subcellular trafficking of ER-tethered EIN2 control response to ethylene gas. Science 338: 390-393.
    • (2012) Science , vol.338 , pp. 390-393
    • Qiao, H.1    Shen, Z.2    Huang, S.S.3    Schmitz, R.J.4    Urich, M.A.5    Briggs, S.P.6    Ecker, J.R.7
  • 32
    • 81155126095 scopus 로고    scopus 로고
    • Down-regulation of UDPglucuronic acid biosynthesis leads to swollen plant cell walls and severe developmental defects associated with changes in pectic polysaccharides
    • Reboul, R., Geserick, C., Pabst, M., Frey, B., Wittmann, D., Lütz-Meindl, U., Léonard, R., and Tenhaken, R. (2011). Down-regulation of UDPglucuronic acid biosynthesis leads to swollen plant cell walls and severe developmental defects associated with changes in pectic polysaccharides. J. Biol. Chem. 286: 39982-39992.
    • (2011) J. Biol. Chem. , vol.286 , pp. 39982-39992
    • Reboul, R.1    Geserick, C.2    Pabst, M.3    Frey, B.4    Wittmann, D.5    Lütz-Meindl, U.6    Léonard, R.7    Tenhaken, R.8
  • 36
    • 70450202132 scopus 로고    scopus 로고
    • The B73 maize genome: Complexity, diversity, and dynamics
    • Schnable, P.S., et al. (2009). The B73 maize genome: Complexity, diversity, and dynamics. Science 326: 1112-1115.
    • (2009) Science , vol.326 , pp. 1112-1115
    • Schnable, P.S.1
  • 38
    • 27944499451 scopus 로고    scopus 로고
    • An iterative statistical approach to the identification of protein phosphorylation motifs from largescale data sets
    • Schwartz, D., and Gygi, S.P. (2005). An iterative statistical approach to the identification of protein phosphorylation motifs from largescale data sets. Nat. Biotechnol. 23: 1391-1398.
    • (2005) Nat. Biotechnol. , vol.23 , pp. 1391-1398
    • Schwartz, D.1    Gygi, S.P.2
  • 42
    • 0025201789 scopus 로고
    • Division and differentiation during normal and liguleless-1 maize leaf development
    • Sylvester, A.W., Cande, W.Z., and Freeling, M. (1990). Division and differentiation during normal and liguleless-1 maize leaf development. Development 110: 985-1000.
    • (1990) Development , vol.110 , pp. 985-1000
    • Sylvester, A.W.1    Cande, W.Z.2    Freeling, M.3
  • 43
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011). MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 44
    • 12144291195 scopus 로고    scopus 로고
    • MAPMAN: A user-driven tool to display genomics data sets onto diagrams ofmetabolic pathways and other biological processes
    • Thimm, O., Bläsing, O., Gibon, Y., Nagel, A., Meyer, S., Krüger, P., Selbig, J., Müller, L.A., Rhee, S.Y., and Stitt, M. (2004). MAPMAN: A user-driven tool to display genomics data sets onto diagrams ofmetabolic pathways and other biological processes. Plant J. 37: 914-939.
    • (2004) Plant J. , vol.37 , pp. 914-939
    • Thimm, O.1    Bläsing, O.2    Gibon, Y.3    Nagel, A.4    Meyer, S.5    Krüger, P.6    Selbig, J.7    Müller, L.A.8    Rhee, S.Y.9    Stitt, M.10
  • 45
    • 35548933794 scopus 로고    scopus 로고
    • Arabidopsis TANGLED identifies the division plane throughout mitosis and cytokinesis
    • Walker, K.L., Müller, S., Moss, D., Ehrhardt, D.W., and Smith, L.G. (2007). Arabidopsis TANGLED identifies the division plane throughout mitosis and cytokinesis. Curr. Biol. 17: 1827-1836.
    • (2007) Curr. Biol. , vol.17 , pp. 1827-1836
    • Walker, K.L.1    Müller, S.2    Moss, D.3    Ehrhardt, D.W.4    Smith, L.G.5
  • 46
    • 84877588949 scopus 로고    scopus 로고
    • Quantitative phosphoproteomics after auxinstimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth
    • Zhang, H., Zhou, H., Berke, L., Heck, A.J., Mohammed, S., Scheres, B., and Menke, F.L. (2013). Quantitative phosphoproteomics after auxinstimulated lateral root induction identifies an SNX1 protein phosphorylation site required for growth. Mol. Cell. Proteomics 12: 1158-1169.
    • (2013) Mol. Cell. Proteomics , vol.12 , pp. 1158-1169
    • Zhang, H.1    Zhou, H.2    Berke, L.3    Heck, A.J.4    Mohammed, S.5    Scheres, B.6    Menke, F.L.7
  • 47
    • 76249120180 scopus 로고    scopus 로고
    • PIN phosphorylation is sufficient to mediate PIN polarity and direct auxin transport
    • Zhang, J., Nodzynski, T., Pencík, A., Rolcík, J., and Friml, J. (2010). PIN phosphorylation is sufficient to mediate PIN polarity and direct auxin transport. Proc. Natl. Acad. Sci. USA 107: 918-922.
    • (2010) Proc. Natl. Acad. Sci. USA , vol.107 , pp. 918-922
    • Zhang, J.1    Nodzynski, T.2    Pencík, A.3    Rolcík, J.4    Friml, J.5
  • 48
    • 84871855722 scopus 로고    scopus 로고
    • Identification of PAN2 by quantitative proteomics as a leucine-rich repeat-receptor-like kinase acting upstream of PAN1 to polarize cell division in maize
    • Zhang, X., Facette, M., Humphries, J.A., Shen, Z., Park, Y., Sutimantanapi, D., Sylvester, A.W., Briggs, S.P., and Smith, L.G. (2012). Identification of PAN2 by quantitative proteomics as a leucine-rich repeat-receptor-like kinase acting upstream of PAN1 to polarize cell division in maize. Plant Cell 24: 4577-4589.
    • (2012) Plant Cell , vol.24 , pp. 4577-4589
    • Zhang, X.1    Facette, M.2    Humphries, J.A.3    Shen, Z.4    Park, Y.5    Sutimantanapi, D.6    Sylvester, A.W.7    Briggs, S.P.8    Smith, L.G.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.