-
1
-
-
18744382506
-
ProtTest: selection of best-fit models of protein evolution
-
Abascal, F., Zardoya, R., and Posada, D. (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21: 2014-2015.
-
(2005)
Bioinformatics
, vol.21
, pp. 2014-2015
-
-
Abascal, F.1
Zardoya, R.2
Posada, D.3
-
2
-
-
76449098262
-
PHENIX: a comprehensive Python-based system for macromolecular structure solution
-
Adams, P.D., Afonine, P.V., Bunkóczi, G., Chen, V.B., Davis, I.W., Echols, N., etal. (2010) PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 66: 213-221.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkóczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
-
3
-
-
84870687262
-
Aquaporin AqpZ is involved in cell volume regulation and sensitivity to osmotic stress in Synechocystis sp. strain PCC 6803
-
Akai, M., Onai, K., Morishita, M., Mino, H., Shijuku, T., Maruyama, H., etal. (2012) Aquaporin AqpZ is involved in cell volume regulation and sensitivity to osmotic stress in Synechocystis sp. strain PCC 6803. J Bacteriol 194: 6828-6836.
-
(2012)
J Bacteriol
, vol.194
, pp. 6828-6836
-
-
Akai, M.1
Onai, K.2
Morishita, M.3
Mino, H.4
Shijuku, T.5
Maruyama, H.6
-
4
-
-
40849145295
-
Assembly and disassembly dynamics of the cyanobacterial periodosome
-
Akiyama, S., Nohara, A., Ito, K., and Maéda, Y. (2008) Assembly and disassembly dynamics of the cyanobacterial periodosome. Mol Cell 29: 703-716.
-
(2008)
Mol Cell
, vol.29
, pp. 703-716
-
-
Akiyama, S.1
Nohara, A.2
Ito, K.3
Maéda, Y.4
-
5
-
-
73649119529
-
Control of flagellar gene regulation in Legionella pneumophila and its relation to growth phase
-
Albert-Weissenberger, C., Sahr, T., Sismeiro, O., Hacker, J., Heuner, K., and Buchrieser, C. (2010) Control of flagellar gene regulation in Legionella pneumophila and its relation to growth phase. J Bacteriol 192: 446-455.
-
(2010)
J Bacteriol
, vol.192
, pp. 446-455
-
-
Albert-Weissenberger, C.1
Sahr, T.2
Sismeiro, O.3
Hacker, J.4
Heuner, K.5
Buchrieser, C.6
-
6
-
-
40449126813
-
The response regulator CpxR directly regulates expression of several Legionella pneumophila icm/dot components as well as new translocated substrates
-
Altman, E., and Segal, G. (2008) The response regulator CpxR directly regulates expression of several Legionella pneumophila icm/dot components as well as new translocated substrates. J Bacteriol 90: 1985-1996.
-
(2008)
J Bacteriol
, vol.90
, pp. 1985-1996
-
-
Altman, E.1
Segal, G.2
-
7
-
-
0034968828
-
RpoS co-operates with other factors to induce Legionella pneumophila virulence in the stationary phase
-
Bachman, M.A., and Swanson, M.S. (2001) RpoS co-operates with other factors to induce Legionella pneumophila virulence in the stationary phase. Mol Microbiol 40: 1201-1214.
-
(2001)
Mol Microbiol
, vol.40
, pp. 1201-1214
-
-
Bachman, M.A.1
Swanson, M.S.2
-
8
-
-
0035108401
-
Essential thioredoxin-dependent peroxiredoxin system from Helicobacter pylori: genetic and kinetic characterization
-
Baker, L.M., Raudonikiene, A., Hoffman, P.S., and Poole, L.B. (2001) Essential thioredoxin-dependent peroxiredoxin system from Helicobacter pylori: genetic and kinetic characterization. J Bacteriol 183: 1961-1973.
-
(2001)
J Bacteriol
, vol.183
, pp. 1961-1973
-
-
Baker, L.M.1
Raudonikiene, A.2
Hoffman, P.S.3
Poole, L.B.4
-
9
-
-
0034462749
-
Catalase-peroxidases of Legionella pneumophila: cloning of the katA gene and studies of KatA function
-
Bandyopadhyay, P., and Steinman, H.M. (2000) Catalase-peroxidases of Legionella pneumophila: cloning of the katA gene and studies of KatA function. J Bacteriol 182: 6679-6686.
-
(2000)
J Bacteriol
, vol.182
, pp. 6679-6686
-
-
Bandyopadhyay, P.1
Steinman, H.M.2
-
10
-
-
0041764462
-
Legionella pneumophila catalase-peroxidases are required for proper trafficking and growth in primary macrophages
-
Bandyopadhyay, P., Byrne, B., Chan, Y., Swanson, M.S., and Steinman, H.M. (2003) Legionella pneumophila catalase-peroxidases are required for proper trafficking and growth in primary macrophages. Infect Immun 71: 4526-4535.
-
(2003)
Infect Immun
, vol.71
, pp. 4526-4535
-
-
Bandyopadhyay, P.1
Byrne, B.2
Chan, Y.3
Swanson, M.S.4
Steinman, H.M.5
-
11
-
-
33745767998
-
Virulence strategies for infecting phagocytes deduced from the in vivo transcriptional program of Legionella pneumophila
-
Bruggemann, H., Hagman, A., Jules, M., Sismeiro, O., Dillies, M.A., Gouyette, C., etal. (2006) Virulence strategies for infecting phagocytes deduced from the in vivo transcriptional program of Legionella pneumophila. Cell Microbiol 8: 1228-1240.
-
(2006)
Cell Microbiol
, vol.8
, pp. 1228-1240
-
-
Bruggemann, H.1
Hagman, A.2
Jules, M.3
Sismeiro, O.4
Dillies, M.A.5
Gouyette, C.6
-
12
-
-
0037039818
-
Metabolic enzymes of mycobacteria linked to antioxidant defense by a thioredoxin-like protein
-
Bryk, R., Lima, C.D., Erdjument-Bromage, H., Tempst, P., and Nathan, C. (2002) Metabolic enzymes of mycobacteria linked to antioxidant defense by a thioredoxin-like protein. Science 295: 1073-1077.
-
(2002)
Science
, vol.295
, pp. 1073-1077
-
-
Bryk, R.1
Lima, C.D.2
Erdjument-Bromage, H.3
Tempst, P.4
Nathan, C.5
-
13
-
-
0031841662
-
Expression of Legionella pneumophila virulence traits in response to growth conditions
-
Byrne, B., and Swanson, M.S. (1998) Expression of Legionella pneumophila virulence traits in response to growth conditions. Infect Immun 66: 3029-3034.
-
(1998)
Infect Immun
, vol.66
, pp. 3029-3034
-
-
Byrne, B.1
Swanson, M.S.2
-
14
-
-
33646903912
-
Feo - transport of ferrous iron into bacteria
-
Cartron, M.L., Maddocks, S., Gillingham, P., Craven, C.J., and Andrews, S.C. (2006) Feo - transport of ferrous iron into bacteria. Biometals 19: 143-157.
-
(2006)
Biometals
, vol.19
, pp. 143-157
-
-
Cartron, M.L.1
Maddocks, S.2
Gillingham, P.3
Craven, C.J.4
Andrews, S.C.5
-
15
-
-
0024384046
-
Characterization of selective inhibition of growth of virulent Legionella pneumophila by supplemented Mueller-Hinton medium
-
Catrenich, C.E., and Johnson, W. (1989) Characterization of selective inhibition of growth of virulent Legionella pneumophila by supplemented Mueller-Hinton medium. Infect Immun 57: 1862-1864.
-
(1989)
Infect Immun
, vol.57
, pp. 1862-1864
-
-
Catrenich, C.E.1
Johnson, W.2
-
16
-
-
10044263696
-
Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity
-
Cazalet, C., Rusniok, C., Bruggemann, H., Zidane, N., Magnier, A., Ma, L., etal. (2004) Evidence in the Legionella pneumophila genome for exploitation of host cell functions and high genome plasticity. Nat Genet 36: 1165-1173.
-
(2004)
Nat Genet
, vol.36
, pp. 1165-1173
-
-
Cazalet, C.1
Rusniok, C.2
Bruggemann, H.3
Zidane, N.4
Magnier, A.5
Ma, L.6
-
17
-
-
77649198508
-
Analysis of the Legionella longbeachae genome and transcriptome uncovers unique strategies to cause Legionnaires' disease
-
Cazalet, C., Gomez-Valero, L., Rusniok, C., Lomma, M., Dervins-Ravault, D., Newton, H.J., etal. (2010) Analysis of the Legionella longbeachae genome and transcriptome uncovers unique strategies to cause Legionnaires' disease. PLoS Genet 6: e1000851.
-
(2010)
PLoS Genet
, vol.6
-
-
Cazalet, C.1
Gomez-Valero, L.2
Rusniok, C.3
Lomma, M.4
Dervins-Ravault, D.5
Newton, H.J.6
-
18
-
-
84874731065
-
Photocycle of the LOV-STAS protein from the pathogen Listeria monocytogenes
-
Chan, R.H., Lewis, J.W., and Bogomolni, R.A. (2013) Photocycle of the LOV-STAS protein from the pathogen Listeria monocytogenes. Photochem Photobiol 89: 361-369.
-
(2013)
Photochem Photobiol
, vol.89
, pp. 361-369
-
-
Chan, R.H.1
Lewis, J.W.2
Bogomolni, R.A.3
-
19
-
-
1442281243
-
Legionella effectors that promote nonlytic release from protozoa
-
Chen, J., de Felipe, K.S., Clarke, M., Lu, H., Anderson, O.R., Segal, G., and Shuman, H.A. (2004) Legionella effectors that promote nonlytic release from protozoa. Science 303: 1358-1361.
-
(2004)
Science
, vol.303
, pp. 1358-1361
-
-
Chen, J.1
de Felipe, K.S.2
Clarke, M.3
Lu, H.4
Anderson, O.R.5
Segal, G.6
Shuman, H.A.7
-
20
-
-
34248666720
-
Iron acquisition by Legionella pneumophila
-
Cianciotto, N. (2007) Iron acquisition by Legionella pneumophila. Biometals 20: 323-331.
-
(2007)
Biometals
, vol.20
, pp. 323-331
-
-
Cianciotto, N.1
-
21
-
-
77950211392
-
Distinct roles of ppGpp and DksA in Legionella pneumophila differentiation
-
Dalebroux, Z.D., Yagi, B.F., Sahr, T., Buchrieser, C., and Swanson, M.S. (2010) Distinct roles of ppGpp and DksA in Legionella pneumophila differentiation. Mol Microbiol 76: 200-219.
-
(2010)
Mol Microbiol
, vol.76
, pp. 200-219
-
-
Dalebroux, Z.D.1
Yagi, B.F.2
Sahr, T.3
Buchrieser, C.4
Swanson, M.S.5
-
22
-
-
76749111535
-
Elevated ATPase activity of KaiC applies a circadian checkpoint on cell division in Synechococcus elongatus
-
Dong, G., Yang, Q., Wang, Q., Kim, Y.I., Wood, T.L., Osteryoung, K.W., etal. (2010) Elevated ATPase activity of KaiC applies a circadian checkpoint on cell division in Synechococcus elongatus. Cell 140: 529-539.
-
(2010)
Cell
, vol.140
, pp. 529-539
-
-
Dong, G.1
Yang, Q.2
Wang, Q.3
Kim, Y.I.4
Wood, T.L.5
Osteryoung, K.W.6
-
23
-
-
0033060648
-
On the binding of ATP to the autophosphorylating protein, Ptk, of the bacterium Acinetobacter johnsonii
-
Doublet, P., Vincent, C., Grangeasse, C., Cozzone, A.J., and Duclos, B. (1999) On the binding of ATP to the autophosphorylating protein, Ptk, of the bacterium Acinetobacter johnsonii. FEBS Lett 445: 137-143.
-
(1999)
FEBS Lett
, vol.445
, pp. 137-143
-
-
Doublet, P.1
Vincent, C.2
Grangeasse, C.3
Cozzone, A.J.4
Duclos, B.5
-
24
-
-
0344321891
-
Origin and evolution of circadian clock genes in prokaryotes
-
Dvornyk, V., Vinogradova, O., and Nevo, E. (2003) Origin and evolution of circadian clock genes in prokaryotes. Proc Natl Acad Sci USA 100: 2495-2500.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 2495-2500
-
-
Dvornyk, V.1
Vinogradova, O.2
Nevo, E.3
-
25
-
-
13244281317
-
Coot: model-building tools for molecular graphics
-
Emsley, P., and Cowtan, K. (2004) Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 60: 2126-2132.
-
(2004)
Acta Crystallogr D Biol Crystallogr
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
26
-
-
84858001166
-
Legionella pneumophila transcriptome during intracellular multiplication in human macrophages
-
Faucher, S.P., Mueller, C.A., and Shuman, H.A. (2011) Legionella pneumophila transcriptome during intracellular multiplication in human macrophages. Front Microbiol 2: 60.
-
(2011)
Front Microbiol
, vol.2
, pp. 60
-
-
Faucher, S.P.1
Mueller, C.A.2
Shuman, H.A.3
-
27
-
-
0036314980
-
Legionella and Legionnaires' disease: 25 years of investigation
-
Fields, B.S., Benson, R.F., and Besser, R.E. (2002) Legionella and Legionnaires' disease: 25 years of investigation. Clin Microbiol Rev 15: 506-526.
-
(2002)
Clin Microbiol Rev
, vol.15
, pp. 506-526
-
-
Fields, B.S.1
Benson, R.F.2
Besser, R.E.3
-
28
-
-
0017726281
-
Legionnaires' disease: description of an epidemic of pneumonia
-
Fraser, D.W., Tsai, T.R., Orenstein, W., Parkin, W.E., Beecham, H.J., Sharrar, R.G., etal. (1977) Legionnaires' disease: description of an epidemic of pneumonia. N Engl J Med 297: 1189-1197.
-
(1977)
N Engl J Med
, vol.297
, pp. 1189-1197
-
-
Fraser, D.W.1
Tsai, T.R.2
Orenstein, W.3
Parkin, W.E.4
Beecham, H.J.5
Sharrar, R.G.6
-
29
-
-
81255205278
-
Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes
-
Gomez-Valero, L., Rusniok, C., Jarraud, S., Vacherie, B., Rouy, Z., Barbe, V., etal. (2011) Extensive recombination events and horizontal gene transfer shaped the Legionella pneumophila genomes. BMC Genomics 12: 536.
-
(2011)
BMC Genomics
, vol.12
, pp. 536
-
-
Gomez-Valero, L.1
Rusniok, C.2
Jarraud, S.3
Vacherie, B.4
Rouy, Z.5
Barbe, V.6
-
30
-
-
43249087505
-
Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species
-
González, N., Heeb, S., Valverde, C., Kay, E., Reimmann, C., Junier, T., and Haas, H.D. (2008) Genome-wide search reveals a novel GacA-regulated small RNA in Pseudomonas species. BMC Genomics 9: 167.
-
(2008)
BMC Genomics
, vol.9
, pp. 167
-
-
González, N.1
Heeb, S.2
Valverde, C.3
Kay, E.4
Reimmann, C.5
Junier, T.6
Haas, H.D.7
-
31
-
-
23144433822
-
PHYML Online - a web server for fast maximum likelihood-based phylogenetic inference
-
Guindon, S., Lethiec, F., Duroux, P., and Gascuel, O. (2005) PHYML Online - a web server for fast maximum likelihood-based phylogenetic inference. Nucleic Acids Res 33: W557-W559.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Guindon, S.1
Lethiec, F.2
Duroux, P.3
Gascuel, O.4
-
32
-
-
84876820077
-
Two antagonistic clock-regulated histidine kinases time the activation of circadian gene expression
-
Gutu, A., and O'Shea, E.K. (2013) Two antagonistic clock-regulated histidine kinases time the activation of circadian gene expression. Mol Cell 50: 288-294.
-
(2013)
Mol Cell
, vol.50
, pp. 288-294
-
-
Gutu, A.1
O'Shea, E.K.2
-
33
-
-
0036225745
-
A two-component regulator induces the transmission phenotype of stationary-phase Legionella pneumophila
-
Hammer, B.K., Tateda, E.S., and Swanson, M.S. (2002) A two-component regulator induces the transmission phenotype of stationary-phase Legionella pneumophila. Mol Microbiol 44: 107-118.
-
(2002)
Mol Microbiol
, vol.44
, pp. 107-118
-
-
Hammer, B.K.1
Tateda, E.S.2
Swanson, M.S.3
-
34
-
-
12844260889
-
Role of the stress sigma factor RpoS in GacA/RsmA-controlled secondary metabolism and resistance to oxidative stress in Pseudomonas fluorescens CHA0
-
Heeb, S., Valverde, C., Gigot-Bonnefoy, C., and Haas, D. (2005) Role of the stress sigma factor RpoS in GacA/RsmA-controlled secondary metabolism and resistance to oxidative stress in Pseudomonas fluorescens CHA0. FEMS Microbiol Lett 243: 251-258.
-
(2005)
FEMS Microbiol Lett
, vol.243
, pp. 251-258
-
-
Heeb, S.1
Valverde, C.2
Gigot-Bonnefoy, C.3
Haas, D.4
-
35
-
-
80052968825
-
Function, structure and mechanism of bacterial photosensory LOV proteins
-
Herrou, J., and Crosson, S. (2011) Function, structure and mechanism of bacterial photosensory LOV proteins. Nat Rev Microbiol 9: 713-723.
-
(2011)
Nat Rev Microbiol
, vol.9
, pp. 713-723
-
-
Herrou, J.1
Crosson, S.2
-
36
-
-
0031032030
-
An iron- and fur-repressed Legionella pneumophila gene that promotes intracellular infection and encodes a protein with similarity to the Escherichia coli aerobactin synthetases
-
Hickey, E.K., and Cianciotto, N. (1997) An iron- and fur-repressed Legionella pneumophila gene that promotes intracellular infection and encodes a protein with similarity to the Escherichia coli aerobactin synthetases. Infect Immun 65: 133-143.
-
(1997)
Infect Immun
, vol.65
, pp. 133-143
-
-
Hickey, E.K.1
Cianciotto, N.2
-
37
-
-
38849137205
-
Transcriptional profiling of Legionella pneumophila biofilm cells and the influence of iron on biofilm formation
-
Hindre, T., Bruggemann, H., Buchrieser, C., and Hechard, Y. (2008) Transcriptional profiling of Legionella pneumophila biofilm cells and the influence of iron on biofilm formation. Microbiology 154: 30-41.
-
(2008)
Microbiology
, vol.154
, pp. 30-41
-
-
Hindre, T.1
Bruggemann, H.2
Buchrieser, C.3
Hechard, Y.4
-
38
-
-
21444458211
-
Tetrameric architecture of the circadian clock protein KaiB. A novel interface for intermolecular interactions and its impact on the circadian rhythm
-
Hitomi, K., Oyama, T., Han, S., and G. E. Arvai, A.S. (2005) Tetrameric architecture of the circadian clock protein KaiB. A novel interface for intermolecular interactions and its impact on the circadian rhythm. J Biol Chem 280: 19127-19135.
-
(2005)
J Biol Chem
, vol.280
, pp. 19127-19135
-
-
Hitomi, K.1
Oyama, T.2
Han, S.3
Arvai, A.S.G.E.4
-
39
-
-
77954288774
-
Dali server: conservation mapping in 3D
-
(Web Server Issue)
-
Holm, L., and Rosenström, P. (2010) Dali server: conservation mapping in 3D. Nucleic Acids Res 38: (Web Server Issue): W545-W549.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Holm, L.1
Rosenström, P.2
-
40
-
-
0033104504
-
Physical interactions among circadian clock proteins KaiA, KaiB and KaiC in cyanobacteria
-
Iwasaki, H., Taniguchi, Y., Ishiura, M., and Kondo, T. (1999) Physical interactions among circadian clock proteins KaiA, KaiB and KaiC in cyanobacteria. EMBO J 18: 1137-1145.
-
(1999)
EMBO J
, vol.18
, pp. 1137-1145
-
-
Iwasaki, H.1
Taniguchi, Y.2
Ishiura, M.3
Kondo, T.4
-
41
-
-
30044441280
-
Functionally important substructures of circadian clock protein KaiB in a unique tetramer complex
-
Iwase, R., Imada, K., Hayashi, F., Uzumaki, T., Morishita, M., Onai, K., etal. (2005) Functionally important substructures of circadian clock protein KaiB in a unique tetramer complex. J Biol Chem 280: 43141-43149.
-
(2005)
J Biol Chem
, vol.280
, pp. 43141-43149
-
-
Iwase, R.1
Imada, K.2
Hayashi, F.3
Uzumaki, T.4
Morishita, M.5
Onai, K.6
-
43
-
-
80053033696
-
Blue flickers of hope: secondary structure, dynamics, and putative dimerization interface of the blue-light receptor YtvA from Bacillus subtilis
-
Jurk, M., Dorn, M., and Schmieder, P. (2011) Blue flickers of hope: secondary structure, dynamics, and putative dimerization interface of the blue-light receptor YtvA from Bacillus subtilis. Biochemistry 50: 8163-8171.
-
(2011)
Biochemistry
, vol.50
, pp. 8163-8171
-
-
Jurk, M.1
Dorn, M.2
Schmieder, P.3
-
44
-
-
0020997912
-
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch, W., and Sander, C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22: 2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
45
-
-
0032510783
-
A bacterial two-hybrid system based on a reconstituted signal transduction pathway
-
Karimova, G., Pidoux, J., Ullmann, A., and Ladant, D. (1998) A bacterial two-hybrid system based on a reconstituted signal transduction pathway. Proc Natl Acad Sci USA 95: 5752-5756.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 5752-5756
-
-
Karimova, G.1
Pidoux, J.2
Ullmann, A.3
Ladant, D.4
-
46
-
-
84873191125
-
The Legionella pneumophila orphan sensor kinase LqsT regulates competence and pathogen-host interactions as a component of the LAI-1 circuit
-
Kessler, A., Schell, U., Sahr, T., Tiaden, A., Harrison, C., Buchrieser, C., and Hilbi, H. (2013) The Legionella pneumophila orphan sensor kinase LqsT regulates competence and pathogen-host interactions as a component of the LAI-1 circuit. Environ Microbiol 15: 646-662.
-
(2013)
Environ Microbiol
, vol.15
, pp. 646-662
-
-
Kessler, A.1
Schell, U.2
Sahr, T.3
Tiaden, A.4
Harrison, C.5
Buchrieser, C.6
Hilbi, H.7
-
47
-
-
0037881861
-
KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacterial circadian clock system
-
Kitayama, Y., Iwasaki, H., Nishiwaki, T., and Kondo, T. (2003) KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacterial circadian clock system. EMBO J 22: 2127-2134.
-
(2003)
EMBO J
, vol.22
, pp. 2127-2134
-
-
Kitayama, Y.1
Iwasaki, H.2
Nishiwaki, T.3
Kondo, T.4
-
48
-
-
75749083323
-
Virulence factors encoded by Legionella longbeachae identified on the basis of the genome sequence analysis of clinical isolate D-4968
-
Kozak, N.A., Buss, M., Lucas, C.E., Frace, M., Govil, D., Travis, T., etal. (2010) Virulence factors encoded by Legionella longbeachae identified on the basis of the genome sequence analysis of clinical isolate D-4968. J Bacteriol 192: 1030-1044.
-
(2010)
J Bacteriol
, vol.192
, pp. 1030-1044
-
-
Kozak, N.A.1
Buss, M.2
Lucas, C.E.3
Frace, M.4
Govil, D.5
Travis, T.6
-
50
-
-
33749038907
-
Compensatory functions of two alkyl hydroperoxide reductases in the oxidative defense system of Legionella pneumophila
-
LeBlanc, J.J., Davidson, R.J., and Hoffman, P.S. (2006) Compensatory functions of two alkyl hydroperoxide reductases in the oxidative defense system of Legionella pneumophila. J Bacteriol 188: 6235-6244.
-
(2006)
J Bacteriol
, vol.188
, pp. 6235-6244
-
-
LeBlanc, J.J.1
Davidson, R.J.2
Hoffman, P.S.3
-
51
-
-
47049121331
-
An ortholog of OxyR in Legionella pneumophila is expressed postexponentially and negatively regulates the alkyl hydroperoxide reductase (ahpC2D) operon
-
LeBlanc, J.J., Brassinga, A.K., Ewann, F., Davidson, R.J., and Hoffman, P.S. (2008) An ortholog of OxyR in Legionella pneumophila is expressed postexponentially and negatively regulates the alkyl hydroperoxide reductase (ahpC2D) operon. J Bacteriol 190: 3444-3455.
-
(2008)
J Bacteriol
, vol.190
, pp. 3444-3455
-
-
LeBlanc, J.J.1
Brassinga, A.K.2
Ewann, F.3
Davidson, R.J.4
Hoffman, P.S.5
-
52
-
-
77953704524
-
The Legionella pneumophila F-box protein Lpp2082 (AnkB) modulates ubiquitination of the host protein parvin B and promotes intracellular replication
-
Lomma, M., Dervins-Ravault, D., Rolando, M., Nora, T., Newton, H.J., Sansom, F.M., etal. (2010) The Legionella pneumophila F-box protein Lpp2082 (AnkB) modulates ubiquitination of the host protein parvin B and promotes intracellular replication. Cell Microbiol 12: 1272-1291.
-
(2010)
Cell Microbiol
, vol.12
, pp. 1272-1291
-
-
Lomma, M.1
Dervins-Ravault, D.2
Rolando, M.3
Nora, T.4
Newton, H.J.5
Sansom, F.M.6
-
53
-
-
80052343431
-
Circadian clock proteins in prokaryotes: hidden rhythms?
-
Loza-Correa, M., Gomez-Valero, L., and Buchrieser, C. (2010) Circadian clock proteins in prokaryotes: hidden rhythms? Front Microbiol 1: 130.
-
(2010)
Front Microbiol
, vol.1
, pp. 130
-
-
Loza-Correa, M.1
Gomez-Valero, L.2
Buchrieser, C.3
-
54
-
-
0017662282
-
Legionnaires' disease: isolation of a bacterium and demonstration of its role in other respiratory disease
-
McDade, J.E., Shepard, C.C., Fraser, D.W., Tsai, T.R., Redus, M.A., and Dowdle, W.R. (1977) Legionnaires' disease: isolation of a bacterium and demonstration of its role in other respiratory disease. N Engl J Med 297: 1197-1203.
-
(1977)
N Engl J Med
, vol.297
, pp. 1197-1203
-
-
McDade, J.E.1
Shepard, C.C.2
Fraser, D.W.3
Tsai, T.R.4
Redus, M.A.5
Dowdle, W.R.6
-
55
-
-
77951921902
-
Mammalian Per-Arnt-Sim proteins in environmental adaptation
-
McIntosh, B.E., Hogenesch, J.B., and Bradfield, C.A. (2010) Mammalian Per-Arnt-Sim proteins in environmental adaptation. Annu Rev Physiol 72: 625-645.
-
(2010)
Annu Rev Physiol
, vol.72
, pp. 625-645
-
-
McIntosh, B.E.1
Hogenesch, J.B.2
Bradfield, C.A.3
-
56
-
-
34548496311
-
Winding up the cyanobacterial circadian clock
-
Mackey, S.R., and Golden, S.S. (2007) Winding up the cyanobacterial circadian clock. Trends Microbiol 1: 381-388.
-
(2007)
Trends Microbiol
, vol.1
, pp. 381-388
-
-
Mackey, S.R.1
Golden, S.S.2
-
57
-
-
80052872129
-
The itty-bitty time machine genetics of the cyanobacterial circadian clock
-
Mackey, S.R., Golden, S.S., and Ditty, J.L. (2011) The itty-bitty time machine genetics of the cyanobacterial circadian clock. Adv Genet 74: 13-53.
-
(2011)
Adv Genet
, vol.74
, pp. 13-53
-
-
Mackey, S.R.1
Golden, S.S.2
Ditty, J.L.3
-
58
-
-
12744269975
-
Rhythmic gene expression in a purple photosynthetic bacterium, Rhodobacter sphaeroide
-
Min, H., Guo, H., and Xiong, J. (2005a) Rhythmic gene expression in a purple photosynthetic bacterium, Rhodobacter sphaeroide. FEBS Lett 579: 808-812.
-
(2005)
FEBS Lett
, vol.579
, pp. 808-812
-
-
Min, H.1
Guo, H.2
Xiong, J.3
-
59
-
-
77950421915
-
Genome analysis of microorganisms living in amoebae reveals a melting pot of evolution
-
Moliner, C., Fournier, P.E., and Raoult, D. (2010) Genome analysis of microorganisms living in amoebae reveals a melting pot of evolution. FEMS Microbiol Rev 34: 281-294.
-
(2010)
FEMS Microbiol Rev
, vol.34
, pp. 281-294
-
-
Moliner, C.1
Fournier, P.E.2
Raoult, D.3
-
60
-
-
3142512687
-
Differentiate to thrive: lessons from the Legionella pneumophila life cycle
-
Molofsky, A.B., and Swanson, M.S. (2004) Differentiate to thrive: lessons from the Legionella pneumophila life cycle. Mol Microbiol 53: 29-40.
-
(2004)
Mol Microbiol
, vol.53
, pp. 29-40
-
-
Molofsky, A.B.1
Swanson, M.S.2
-
61
-
-
17244373578
-
Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro
-
Nakajima, M., Imai, K., Ito, H., Nishiwaki, T., Murayama, Y., Iwasaki, H., etal. (2005) Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro. Science 308: 414-415.
-
(2005)
Science
, vol.308
, pp. 414-415
-
-
Nakajima, M.1
Imai, K.2
Ito, H.3
Nishiwaki, T.4
Murayama, Y.5
Iwasaki, H.6
-
62
-
-
77950662773
-
Molecular pathogenesis of infections caused by Legionella pneumophila
-
Newton, H.J., Ang, D.K., van Driel, I.R., and Hartland, E.L. (2010) Molecular pathogenesis of infections caused by Legionella pneumophila. Clin Microbiol Rev 23: 274-298.
-
(2010)
Clin Microbiol Rev
, vol.23
, pp. 274-298
-
-
Newton, H.J.1
Ang, D.K.2
van Driel, I.R.3
Hartland, E.L.4
-
63
-
-
0034602708
-
Nucleotide binding and autophosphorylation of the clock protein KaiC as a circadian timing process of cyanobacteria
-
Nishiwaki, T., Iwasaki, H., Ishiura, M., and Kondo, T. (2000) Nucleotide binding and autophosphorylation of the clock protein KaiC as a circadian timing process of cyanobacteria. Proc Natl Acad Sci USA 97: 495-499.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 495-499
-
-
Nishiwaki, T.1
Iwasaki, H.2
Ishiura, M.3
Kondo, T.4
-
64
-
-
34548382214
-
A sequential program of dual phosphorylation of KaiC as a basis for circadian rhythm in cyanobacteria
-
Nishiwaki, T., Satomi, Y., Kitayama, Y., Terauchi, K., Kiyohara, R., Takao, T., and Kondo, T. (2007) A sequential program of dual phosphorylation of KaiC as a basis for circadian rhythm in cyanobacteria. EMBO J 26: 4029-4037.
-
(2007)
EMBO J
, vol.26
, pp. 4029-4037
-
-
Nishiwaki, T.1
Satomi, Y.2
Kitayama, Y.3
Terauchi, K.4
Kiyohara, R.5
Takao, T.6
Kondo, T.7
-
65
-
-
84863242725
-
Draft genome sequences of two Legionella dumoffii strains, TEX-KL and NY-23
-
Qin, T., Cui, Y., Cen, Z., Liang, T., Ren, H., Yang, X., etal. (2012) Draft genome sequences of two Legionella dumoffii strains, TEX-KL and NY-23. J Bacteriol 194: 1251-1252.
-
(2012)
J Bacteriol
, vol.194
, pp. 1251-1252
-
-
Qin, T.1
Cui, Y.2
Cen, Z.3
Liang, T.4
Ren, H.5
Yang, X.6
-
66
-
-
77957054558
-
Intermolecular associations determine the dynamics of the circadian KaiABC oscillator
-
Qin, X., Byrne, M., Mori, T., Zou, P., Williams, D.R., McHaourab, H., and Johnson, C.H. (2010) Intermolecular associations determine the dynamics of the circadian KaiABC oscillator. Proc Natl Acad Sci USA 107: 14805-14810.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 14805-14810
-
-
Qin, X.1
Byrne, M.2
Mori, T.3
Zou, P.4
Williams, D.R.5
McHaourab, H.6
Johnson, C.H.7
-
67
-
-
0036081333
-
Macrophage-induced genes of Legionella pneumophila: protection from reactive intermediates and solute imbalance during intracellular growth
-
Rankin, S., Li, Z., and Isberg, R.R. (2002) Macrophage-induced genes of Legionella pneumophila: protection from reactive intermediates and solute imbalance during intracellular growth. Infect Immun 70: 3637-3648.
-
(2002)
Infect Immun
, vol.70
, pp. 3637-3648
-
-
Rankin, S.1
Li, Z.2
Isberg, R.R.3
-
68
-
-
0036785675
-
Legionella pneumophila feoAB promotes ferrous iron uptake and intracellular infection
-
Robey, M., and Cianciotto, N. (2002) Legionella pneumophila feoAB promotes ferrous iron uptake and intracellular infection. Infect Immun 70: 5659-5669.
-
(2002)
Infect Immun
, vol.70
, pp. 5659-5669
-
-
Robey, M.1
Cianciotto, N.2
-
69
-
-
84876395478
-
Legionella pneumophila effector RomA uniquely modifies host chromatin to repress gene expression and promote intracellular bacterial replication
-
Rolando, M., Sanulli, S., Rusniok, C., Gomez-Valzero, L., Bertholet, C., Sahr, T., etal. (2013) Legionella pneumophila effector RomA uniquely modifies host chromatin to repress gene expression and promote intracellular bacterial replication. Cell Host Microbe 13: 395-405.
-
(2013)
Cell Host Microbe
, vol.13
, pp. 395-405
-
-
Rolando, M.1
Sanulli, S.2
Rusniok, C.3
Gomez-Valzero, L.4
Bertholet, C.5
Sahr, T.6
-
70
-
-
37549018348
-
Ordered phosphorylation governs oscillation of a three-protein circadian clock
-
Rust, M.J., Markson, J.S., Lane, W.S., Fisher, D.S., and O'Shea, E.K. (2007) Ordered phosphorylation governs oscillation of a three-protein circadian clock. Science 318: 809-812.
-
(2007)
Science
, vol.318
, pp. 809-812
-
-
Rust, M.J.1
Markson, J.S.2
Lane, W.S.3
Fisher, D.S.4
O'Shea, E.K.5
-
71
-
-
65349151312
-
Two small ncRNAs jointly govern virulence and transmission in Legionella pneumophila
-
Sahr, T., Bruggemann, H., Jules, M., Lomma, M., Albert-Weissenberger, C., Cazalet, C., and Buchrieser, C. (2009) Two small ncRNAs jointly govern virulence and transmission in Legionella pneumophila. Mol Microbiol 72: 741-762.
-
(2009)
Mol Microbiol
, vol.72
, pp. 741-762
-
-
Sahr, T.1
Bruggemann, H.2
Jules, M.3
Lomma, M.4
Albert-Weissenberger, C.5
Cazalet, C.6
Buchrieser, C.7
-
72
-
-
84860771585
-
Deep sequencing defines the transcriptional map of L. pneumophila and identifies growth phase-dependent regulated ncRNAs implicated in virulence
-
Sahr, T., Rusniok, C., Dervins-Ravault, D., Sismeiro, O., Coppee, J.Y., and Buchrieser, C. (2012) Deep sequencing defines the transcriptional map of L. pneumophila and identifies growth phase-dependent regulated ncRNAs implicated in virulence. RNA Biol 9: 503-519.
-
(2012)
RNA Biol
, vol.9
, pp. 503-519
-
-
Sahr, T.1
Rusniok, C.2
Dervins-Ravault, D.3
Sismeiro, O.4
Coppee, J.Y.5
Buchrieser, C.6
-
73
-
-
0029864850
-
Periplasmic copper-zinc superoxide dismutase of Legionella pneumophila: role in stationary-phase survival
-
St John, G., and Steinman, H.M. (1996) Periplasmic copper-zinc superoxide dismutase of Legionella pneumophila: role in stationary-phase survival. J Bacteriol 178: 1578-1584.
-
(1996)
J Bacteriol
, vol.178
, pp. 1578-1584
-
-
St John, G.1
Steinman, H.M.2
-
74
-
-
70349274104
-
Structural and mechanistic determinants of c-di-GMP signalling
-
Schirmer, T., and Jenal, U. (2009) Structural and mechanistic determinants of c-di-GMP signalling. Nat Rev Microbiol 7: 724-735.
-
(2009)
Nat Rev Microbiol
, vol.7
, pp. 724-735
-
-
Schirmer, T.1
Jenal, U.2
-
75
-
-
0345118289
-
Photochemical effects on microbial activity in natural waters: the interaction of reactive oxygen species and dissolved organic matter
-
Scully, N.M., Cooper, W.J., and Tranvik, L.J. (2003) Photochemical effects on microbial activity in natural waters: the interaction of reactive oxygen species and dissolved organic matter. FEMS Microbiol Ecol 46: 353-357.
-
(2003)
FEMS Microbiol Ecol
, vol.46
, pp. 353-357
-
-
Scully, N.M.1
Cooper, W.J.2
Tranvik, L.J.3
-
76
-
-
33744779947
-
Circadian rhythms in gene transcription imparted by chromosome compaction in the cyanobacterium Synechococcus elongatus
-
Smith, R.M., and Williams, S.B. (2006) Circadian rhythms in gene transcription imparted by chromosome compaction in the cyanobacterium Synechococcus elongatus. Proc Natl Acad Sci USA 103: 8564-8569.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 8564-8569
-
-
Smith, R.M.1
Williams, S.B.2
-
77
-
-
0033056903
-
The pvc gene cluster of Pseudomonas aeruginosa: role in synthesis of the pyoverdine chromophore and regulation by PtxR and PvdS
-
Stintzi, A., Johnson, Z., Stonehouse, M., Ochsner, U., Meyer, J.M., Vasil, M.L., and Poole, K. (1999) The pvc gene cluster of Pseudomonas aeruginosa: role in synthesis of the pyoverdine chromophore and regulation by PtxR and PvdS. J Bacteriol 181: 4118-4124.
-
(1999)
J Bacteriol
, vol.181
, pp. 4118-4124
-
-
Stintzi, A.1
Johnson, Z.2
Stonehouse, M.3
Ochsner, U.4
Meyer, J.M.5
Vasil, M.L.6
Poole, K.7
-
78
-
-
80054796108
-
Using the T-coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures
-
Taly, J.F., Magis, C., Bussotti, G., Chang, J.M., Tommaso, P.D., Erb, I., etal. (2011) Using the T-coffee package to build multiple sequence alignments of protein, RNA, DNA sequences and 3D structures. Nat Protoc 6: 1669-1682.
-
(2011)
Nat Protoc
, vol.6
, pp. 1669-1682
-
-
Taly, J.F.1
Magis, C.2
Bussotti, G.3
Chang, J.M.4
Tommaso, P.D.5
Erb, I.6
-
79
-
-
34547781750
-
MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
-
Tamura, K., Dudley, J., Nei, M., and Kumar, S. (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
-
(2007)
Mol Biol Evol
, vol.24
, pp. 1596-1599
-
-
Tamura, K.1
Dudley, J.2
Nei, M.3
Kumar, S.4
-
80
-
-
33846150032
-
labA: a novel gene required for negative feedback regulation of the cyanobacterial circadian clock protein KaiC
-
Taniguchi, Y., Katayama, M., Ito, R., Takai, N., Kondo, T., and Oyama, T. (2007) labA: a novel gene required for negative feedback regulation of the cyanobacterial circadian clock protein KaiC. Genes Dev 21: 60-70.
-
(2007)
Genes Dev
, vol.21
, pp. 60-70
-
-
Taniguchi, Y.1
Katayama, M.2
Ito, R.3
Takai, N.4
Kondo, T.5
Oyama, T.6
-
81
-
-
0032990441
-
PAS domains: internal sensors of oxygen, redox potential, and light
-
Taylor, B.L., and Zhulin, I.B. (1999) PAS domains: internal sensors of oxygen, redox potential, and light. Microbiol Mol Biol Rev 63: 479-506.
-
(1999)
Microbiol Mol Biol Rev
, vol.63
, pp. 479-506
-
-
Taylor, B.L.1
Zhulin, I.B.2
-
82
-
-
84871732305
-
The circadian clock-associated small GTPase LIGHT INSENSITIVE PERIOD1 suppresses light-controlled endoreplication and affects tolerance to salt stress in Arabidopsis
-
Terecskei, K., Tóth, R., Gyula, P., Kevei, E., Bindics, J., Coupland, G., etal. (2013) The circadian clock-associated small GTPase LIGHT INSENSITIVE PERIOD1 suppresses light-controlled endoreplication and affects tolerance to salt stress in Arabidopsis. Plant Physiol 161: 278-290.
-
(2013)
Plant Physiol
, vol.161
, pp. 278-290
-
-
Terecskei, K.1
Tóth, R.2
Gyula, P.3
Kevei, E.4
Bindics, J.5
Coupland, G.6
-
84
-
-
12244296161
-
No transcription-translation feedback in circadian rhythm of KaiC phosphorylation
-
Tomita, J., Nakajima, M., Kondo, T., and Iwasaki, H. (2005) No transcription-translation feedback in circadian rhythm of KaiC phosphorylation. Science 307: 251-254.
-
(2005)
Science
, vol.307
, pp. 251-254
-
-
Tomita, J.1
Nakajima, M.2
Kondo, T.3
Iwasaki, H.4
-
85
-
-
84934444524
-
Expression and purification of soluble His(6)-tagged TEV protease
-
Tropea, J.E., Cherry, S., and Waugh, D.S. (2009) Expression and purification of soluble His(6)-tagged TEV protease. Methods Mol Biol 498: 297-307.
-
(2009)
Methods Mol Biol
, vol.498
, pp. 297-307
-
-
Tropea, J.E.1
Cherry, S.2
Waugh, D.S.3
-
86
-
-
84892986955
-
-
Basic Population Genetics. In. New York: Columbia University
-
Wallace, B. (1981) Basic Population Genetics. In. New York: Columbia University, pp.
-
(1981)
-
-
Wallace, B.1
-
87
-
-
84876931666
-
Biochemical analysis of three putative KaiC clock proteins from Synechocystis sp. PCC 6803 suggests their functional divergence
-
Wiegard, A., Dorrich, A.K., Deinzer, H.T., Beck, C., Wilde, A., Holtzendorff, J., and Axmann, I.M. (2013) Biochemical analysis of three putative KaiC clock proteins from Synechocystis sp. PCC 6803 suggests their functional divergence. Microbiology 159: 948-958.
-
(2013)
Microbiology
, vol.159
, pp. 948-958
-
-
Wiegard, A.1
Dorrich, A.K.2
Deinzer, H.T.3
Beck, C.4
Wilde, A.5
Holtzendorff, J.6
Axmann, I.M.7
-
88
-
-
4344699146
-
The adaptive value of circadian clocks: an experimental assessment in cyanobacteria
-
Woelfle, M.A., Ouyang, Y., Phanvijhitsiri, K., and Johnson, C.H. (2004) The adaptive value of circadian clocks: an experimental assessment in cyanobacteria. Curr Biol 14: 1481-1486.
-
(2004)
Curr Biol
, vol.14
, pp. 1481-1486
-
-
Woelfle, M.A.1
Ouyang, Y.2
Phanvijhitsiri, K.3
Johnson, C.H.4
-
89
-
-
0035190121
-
Structure of Thermotoga maritima stationary phase survival protein SurE: a novel acid phosphatase
-
Zhang, R.G., Skarina, T., Katz, J.E., Beasley, S., Khachatryan, A., Vyas, S., etal. (2001) Structure of Thermotoga maritima stationary phase survival protein SurE: a novel acid phosphatase. Structure 9: 1095-1106.
-
(2001)
Structure
, vol.9
, pp. 1095-1106
-
-
Zhang, R.G.1
Skarina, T.2
Katz, J.E.3
Beasley, S.4
Khachatryan, A.5
Vyas, S.6
-
90
-
-
0036136235
-
Characterization of a Legionella pneumophila relA insertion mutant and toles of RelA and RpoS in virulence gene expression
-
Zusman, T., Gal-Mor, O., and Segal, G. (2002) Characterization of a Legionella pneumophila relA insertion mutant and toles of RelA and RpoS in virulence gene expression. J Bacteriol 184: 67-75.
-
(2002)
J Bacteriol
, vol.184
, pp. 67-75
-
-
Zusman, T.1
Gal-Mor, O.2
Segal, G.3
|