labA: A novel gene required for negative feedback regulation of the cyanobacterial circadian clock protein KaiC

Genes and Development

Volumn 21, Issue 1, 2007, Pages 60-70

  Taniguchi, Yasuhito ^a   Katayama, Mitsunori ^a,c   Ito, Rie ^a   Takai, Naoki ^a   Kondo, Takao ^a,b   Oyama, Tokitaka ^a,b  

^a NAGOYA UNIVERSITY   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

Author keywords

Circadian clock; Cyanobacteria; KaiC; labA; RpaA; SasA

Indexed keywords

PROTEIN HISTIDINE KINASE; PROTEIN HISTIDINE KINASE SAS A; TRANSCRIPTION FACTOR CLOCK; TRANSCRIPTION FACTOR KAIC; TRANSCRIPTION FACTOR RPA A; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; CELL METABOLISM; CIRCADIAN RHYTHM; CONTROLLED STUDY; CYANOBACTERIUM; GENE DISRUPTION; GENE EXPRESSION; GENE IDENTIFICATION; GENE INTERACTION; GENE REPRESSION; GENETIC ANALYSIS; LOW AMPLITUDE AND BRIGHT A GENE; NEGATIVE FEEDBACK; NONHUMAN; OXIDATION REDUCTION REACTION; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BASE SEQUENCE; BIOLOGICAL CLOCKS; BLOTTING, NORTHERN; BLOTTING, WESTERN; CIRCADIAN RHYTHM; FEEDBACK, BIOCHEMICAL; GENE EXPRESSION REGULATION, BACTERIAL; MOLECULAR SEQUENCE DATA; MUTAGENESIS; PHOSPHOTRANSFERASES; PROMOTER REGIONS (GENETICS); REPRESSOR PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; SYNECHOCOCCUS; TRANSCRIPTION, GENETIC;

CYANOBACTERIA; SASA; SYNECHOCOCCUS ELONGATUS PCC 6301; SYNECHOCOCCUS ELONGATUS PCC 7942;

EID: 33846150032     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.1488107     Document Type: Article

References (35)

1. Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
2. Brunner, M. and Schafmeier, T. 2006. Transcriptional and posttranscriptional regulation of the circadian clock of cyanobacteria and Neurospora. Genes & Dev. 20: 1061-1074.
3. Bustos, S.A. and Golden, S.S. 1991. Expression of the psbDII gene in Synechococcus sp. strain PCC 7942 requires sequences downstream of the transcription start site. J. Bacteriol. 173: 7525-7533.
4. Ditty, J.L., Williams, S.B., and Golden, S.S. 2003. A cyanobacterial circadian timing mechanism. Annu. Rev. Genet. 37: 513-543.
5. Etchegaray, J.P., Lee, C., Wade, P.A., and Reppert, S.M. 2003. Rhythmic histone acetylation underlies transcription in the mammalian circadian clock. Nature 421: 177-182.
6. Imai, K., Nishiwaki, T., Kondo, T., and Iwasaki, H. 2004. Circadian rhythms in the synthesis and degradation of a master clock protein KaiC in cyanobacteria. J. Biol. Chem. 279: 36534-36539.
7. Ishiura, M., Kutsuna, K., Aoki, S., Iwasaki, H., Andersson, C.R., Tanabe, A., Golden, S.S., Johnson, C.H., and Kondo, T. 1998. Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria. Science 281: 1519-1523.
8. Iwasaki, H., Taniguchi, Y., Ishiura, M., and Kondo, T. 1999. Physical interactions among circadian clock proteins KaiA, KaiB and KaiC in cyanobacteria. EMBO J. 18: 1137-1145.
9. Iwasaki, H., Williams, S.B., Kitayama, Y., Ishiura, M., Golden, S.S., and Kondo, T. 2000. A KaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria. Cell 101: 223-233.
10. Iwasaki, H., Nishiwaki, T., Kitayama, Y., Nakajima, M., and Kondo, T. 2002. KaiA-stimulated KaiC phosphorylation in circadian timing loops in cyanobacteria. Proc. Natl. Acad. Sci. 99: 15788-15793.
11. Kitayama, Y., Iwasaki, H., Nishiwaki, T., and Kondo, T. 2003. KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacterial clock system. EMBO J. 22: 2127-2134.
12. Kitayama, Y., Kondo, T., Nakahira, Y., Nishimura, H., Ohmiya, Y., and Oyama, T. 2004. An in vivo dual-reporter system of cyanobacteria using two railroad-worm luciferases with different color emissions. Plant Cell Physiol. 45: 109-113.
13. Kiyohara, Y.B., Tagao, S., Tamanini, F., Morita, A., Sugisawa, Y., Yasuda, M., Yamanaka, I., Ueda, H.R., van der Horst, G.T., Kondo, T., et al. 2006. The BMAL1 C terminus regulates the circadian transcription feedback loop. Proc. Natl. Acad. Sci. 103: 10074-10079.
14. Kondo, T., Strayer, C.A., Kulkarni, R.D., Taylor, W., Ishiura, M., Golden, S.S., and Johnson, C.H. 1993. Circadian rhythms in prokaryotes: Luciferase as a reporter of circadian gene expression in cyanobacteria. Proc. Natl. Acad. Sci. 90: 5672-5676.
15. Kondo, T., Tsinoremas, N.F., Golden, S.S., Johnson, C.H., Kutsuna, S., and Ishiura, M. 1994. Circadian clock mutants of cyanobacteria. Science 266: 1233-1236.
16. Kondratov, R.V., Shamanna, R.K., Kondratova, A.A., Gorbacheva, V.Y., and Antoch, M.P. 2006. Dual role of the CLOCK/BMAL1 circadian complex in transcriptional regulation. FASEB J. 20: 530-532.
17. Kutsuna, S., Kondo, T., Aoki, S., and Ishiura, M. 1998. A period-extender gene, pex, that extends the period of the circadian clock in the cyanobacterium Synechococcus sp. strain PCC 7942. J. Bacteriol. 180: 2167-2174.
18. Liu, Y., Tsinoremas, N.F., Johnson, C.H., Lebedeva, N.V., Golden, S.S., Ishiura, M., and Kondo, T. 1995. Circadian orchestration of gene expression in cyanobacteria. Genes & Dev. 9: 1469-1478.
19. Marchler-Bauer, A., Anderson, J.B., DeWeese-Scott, C., Fedorova, N.D., Geer, L.Y., He, S., Hurwitz, D.I., Jackson, J.D., Jacobs, A.R., Lanczycki, C.J., et al. 2003. CDD: A curated Entrez database of conserved domain alignments. Nucleic Acids Res. 31: 383-387.
20. Min, H. and Golden, S.S. 2000. A new circadian class 2 gene, opcA, whose product is important for reductant production at night in Synechococcus elongatus PCC 7942. J. Bacteriol. 182: 6214-6221.
21. Nakahira, Y., Katayama, M., Miyashita, H., Kutsuna, S., Iwasaki, H., Oyama, T., and Kondo, T. 2004. Global gene repression by KaiC as a master process of prokaryotic circadian system. Proc. Natl. Acad. Sci. 101: 881-885.
22. Nakajima, M., Imai, K., Ito, H., Nishiwaki, T., Murayama, Y., Iwasaki, H., Oyama, T., and Kondo, T. 2005. Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro. Science 308: 414-415.
23. Nishimura, H., Nakahira, Y., Imai, K., Tsuruhara, A., Kondo, H., Hayashi, H., Hirai, M., Saito, H., and Kondo, T. 2002. Mutations in KaiA, a clock protein, extend the period of circadian rhythm in the cyanobacterium Synechococcus elongatus PCC 7942. Microbiology 148: 2903-2909.
24. Nishiwaki, T., Iwasaki, H., Ishiura, M., and Kondo, T. 2000. Nucleotide binding and autophosphorylation of the clock protein KaiC as a circadian timing process of cyanobacteria. Proc. Natl. Acad. Sci. 97: 495-499.
25. Nishiwaki, T., Satomi, Y., Nakajima, M., Lee, C., Kiyohara, R., Kageyama, H., Kitayama, Y., Temamoto, M., and Yamaguchi, A., Hijikata, A., et al. 2004. Role of KaiC phosphorylation in the circadian clock system of Synechococcus elongatus PCC 7942. Proc. Natl. Acad. Sci. 101: 13927-13932.
26. Porter, R.D. 1988. DNA transformation. Methods Enzymol. 167: 703-712.
27. Schafmeier, T., Kaldi, K., Diernfellner, A., Mohr, C., and Brunner, M. 2006. Phosphorylation-dependent maturation of Neurospora circadian clock protein from a nuclear repressor toward a cytoplasmic activator. Genes & Dev. 20: 297-306.
28. Smith, R.M. and Williams, S.B. 2006. Circadian rhythms in gene transcription imparted by chromosome compaction in the cyanobacterium Synechococcus elongatus. Proc. Natl. Acad. Sci. 103: 8564-8569.
29. Takai, N., Nakajima, M., Oyama, T., Kito, R., Sugita, C., Sugita, M., Kondo, T., and Iwasaki, H. 2006. A KaiC-associating SasA-RpaA two-component regulatory system as a major circadian timing mediator in cyanobacteria. Proc. Natl. Acad. Sci. 103: 12109-12114.
30. Taniguchi, Y., Yamaguchi, A., Hijikata, A., Iwasaki, H., Kamagata, K., Ishiura, M., Go, M., and Kondo, T. 2001. Two KaiA-binding domains of cyanobacterial circadian clock protein KaiC. FEBS Lett. 496: 86-90.
31. Tomita, J., Nakajima, M., Kondo, T., and Iwasaki, H. 2005. No transcription-translation feedback in circadian rhythm of KaiC phosphorylation. Science 307: 251-254.
32. Uzumaki, T., Fujita, M., Nakatsu, T., Hayashi, F., Shibata, H., Itoh, N., Kato, H., and Ishiura, M. 2004. Crystal structure of the C-terminal clock-oscillator domain of the cyanobacterial KaiA protein. Nat. Struct. Mol. Biol. 11: 623-631.
33. Williams, S.B., Vakonakis, I., Golden, S.S., and LiWang, A.C. 2002. Structure and function from the circadian clock protein KaiA of Synechococcus elongatus: A potential clock input mechanism. Proc. Natl. Acad. Sci. 99: 15357-15362.
34. Xu, Y., Mori, T., and Johnson, C.H. 2000. Circadian clock-protein expression in cyanobacteria: Rhythms and phase setting. EMBO J. 19: 3349-3357.
35. Xu, Y., Mori, T., and Johnson, C.H. 2003. Cyanobacterial circadian clockwork: Roles of KaiA, KaiB and the kaiBC promoter in regulating KaiC. EMBO J. 22: 2117-2126.