Tetrameric architecture of the circadian clock protein KaiB: A novel interface for intermolecular interactions and its impact on the circadian rhythm

Journal of Biological Chemistry

Volumn 280, Issue 19, 2005, Pages 19127-19135

  Hitomi, Kenichi ^a   Oyama, Tokitaka ^b,c   Han, Seungil ^a   Arvai, Andrew S ^a   Getzoff, Elizabeth D ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^c NAGOYA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; CRYSTAL STRUCTURE; CRYSTALLOGRAPHY; GENETIC ENGINEERING; HYDROPHOBICITY;

CIRCADIAN CLOCK PROTEIN; CIRCADIAN RHYTHMES; RESOLUTION CRYSTALLOGRAPHIC STRUCTURES; TETRAMERIC ARCHITECTURE;

PROTEINS;

ASPARTIC ACID; BACTERIAL PROTEIN; GLYCINE; HELIX LOOP HELIX PROTEIN; PROTEIN KAIA; PROTEIN KAIB; PROTEIN KAIC; UNCLASSIFIED DRUG; KAIA PROTEIN, CYANOBACTERIA; KAIB PROTEIN, CYANBACTERIA; KAIC PROTEIN, CYANOBACTERIA; PHOSPHOLIPID; PHOSPHOTRANSFERASE; SASA PROTEIN, SYNECHOCOCCUS;

AMINO ACID SUBSTITUTION; ARTICLE; BACTERIUM MUTANT; BETA SHEET; CIRCADIAN RHYTHM; CYANOBACTERIUM; HYDROPHOBICITY; MOLECULAR INTERACTION; MUTATION; NONHUMAN; PHOSPHOLIPID MEMBRANE; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN STRUCTURE; SYNECHOCYSTIS; AMINO ACID SEQUENCE; CHEMICAL STRUCTURE; CHEMISTRY; CYTOSOL; DIMERIZATION; LIGHT; METABOLISM; MOLECULAR GENETICS; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN MOTIF; PROTEIN SECONDARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; RADIATION SCATTERING; SEQUENCE HOMOLOGY; X RAY CRYSTALLOGRAPHY;

CYANOBACTERIA; KAIA; SASA; SYNECHOCYSTIS SP.;

AMINO ACID MOTIFS; AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CIRCADIAN RHYTHM; CRYSTALLOGRAPHY, X-RAY; CYANOBACTERIA; CYTOSOL; DIMERIZATION; LIGHT; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUTATION; PHOSPHOLIPIDS; PHOSPHOTRANSFERASES; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SCATTERING, RADIATION; SEQUENCE HOMOLOGY, AMINO ACID; SYNECHOCYSTIS;

EID: 21444458211     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M411284200     Document Type: Article

References (29)

1. Golden, S. S., Ishiura, M., Johnson, C. H., and Kondo, T. (1997) Annu. Rev. Plant Physiol. Plant Mol. Biol. 48, 327-354
2. Golden, S. S., and Canales, S. R. (2003) Nat. Rev. Microbiol. 1, 191-199
3. Golden, S. S. (2003) Curr. Opin. Microbiol. 6, 535-540
4. Ditty, J. L., Williams, S. B., and Golden, S. S. (2003) Annu. Rev. Genet. 37, 513-543
5. Johnson, C. H. (2004) Nature 430, 23-24
6. Ishiura, M., Kutsuna, S., Aoki, S., Iwasaki, H., Andersson, C. R., Tanabe, A., Golden, S. S., Johnson, C. H., and Kondo, T. (1998) Science 281, 1519-1523
7. Dvornyk, V., Vinogradova, O., and Nevo, E. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 2495-2500
8. Iwasaki, H., Taniguchi, Y., Ishiura, M., and Kondo, T. (1999) EMBO J. 18, 1137-1145
9. Williams, S. B., Vakonakis, I., Golden, S. S., and LiWang, A. C. (2002) Proc. Natl. Acad. Sci. U. S. A. 99, 15357-15362
10. Uzumaki, T., Fujita, M., Nakatsu, T., Hayashi, F., Shibata, H., Itoh, N., Kato, H., and Ishiura, M. (2004) Nat. Struct. Mol. Biol. 11, 623-631
11. Ye, S., Vakonakis, I., Ioerger, T. R., LiWang, A. C., and Sacchettini, J. C. (2004) J. Biol. Chem. 279, 20511-20518
12. Garces, R. G., Wu, N., and Gillon, W., and Pai, E. F. (2004) EMBO J. 23, 1688-1698
13. Vakonakis, I., Sun, J., Wu, T., Holzenburg, A., Golden, S. S., and LiWang, A. C. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 1479-1484
14. Hayashi, F., Suzuki, H., Iwase, R., Uzumaki, T., Miyake, A., Shen, J. R., Imada, K., Furukawa, Y., Yonekura, K., Namba, K., and Ishiura, M. (2003) Genes Cells 8, 287-296
15. Pattanayek, R., Wang, J., Mori, T., Xu, Y., Johnson, C. H., and Egli, M. (2004) Mol. Cell 15, 375-388
16. Iwasaki, H., Williams, S. B., Kitayama, Y., Ishiura, M., Golden, S. S., and Kondo, T. (2000) Cell 101, 223-233
17. Kitayama, Y., Iwasaki, H., Nishiwaki, T., and Kondo, T. (2003) EMBO J. 22, 2127-2134
18. Xu, Y., Mori, T., and Johnson, C. H. (2003) EMBO J. 22, 2117-2126
19. Kageyama, H., Kondo, T., and Iwasaki, H. (2003) J. Bio. Chem. 278, 2388-2395
20. Otwinowski, Z., and Minor, W. (1997) Methods Enzymol. 276, 307-326
21. Navaza, J. (1994) Acta Crystallogr. Sect. A 50, 157-163
22. Brünger, A. T., Adams, P. D., Clore, G. M., DeLano, W. L., Gros, P., Grosse-Kunstleve, R. W., Jiang, J. S., Kuszewski, J., Nilges, M., Pannu, N. S., Read, R. J., Rice, L. M., Simonson, T., and Warren, G. L. (1998) Acta Crystallogr. Sect. D Biol. Crystallogr. 54, 905-921
23. McRee, D. E. (1999) J. Struct. Biol. 125, 156-165
24. Nishimura, H., Nakahira, Y., Imai, K., Tsuruhara, A., Kondo, H., Hayashi, H., Hirai, M., Saito, H., and Kondo T. (2002) Microbiology 148, 2903-2909
25. Iwase, R., Imada, K., Hayashi, F., Uzumaki, T., Namba, K., and Ishiura, M. (2004) Acta Crystallogr. Sect. D Biol. Crystallogr. 60, 727-729
26. Dvornyk, V., Deng, H. W., and Nevo, E. (2004) Mol. Biol. Evol. 21, 1468-1476
27. Klewer, D. A., Williams, S. B., Golden, S. S., and Liwang, A. C. (2002) J. Biomol NMR. 24, 77-78
28. Vakonakis, I., Klewer, D. A., Williams, S. B., Golden, S. S., and LiWang, A. C. (2004) J. Mol. Biol. 342, 9-17
29. Lee, C., Etchegaray, J. P., Cagampang, F. R., London, A. S., and Reppert, S. M. (2001) Cell 107, 855-867