-
1
-
-
21344470923
-
Circadian rhythms from multiple oscillators: lessons from diverse organisms
-
Bell-Pedersen D., et al. Circadian rhythms from multiple oscillators: lessons from diverse organisms. Nat. Rev. Genet. 6 (2005) 544-556
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 544-556
-
-
Bell-Pedersen, D.1
-
2
-
-
0348083153
-
-
Dunlap J.C., et al. (Ed), Sinauer Associates
-
In: Dunlap J.C., et al. (Ed). Chronobiology: Biological Timekeeping (2004), Sinauer Associates
-
(2004)
Chronobiology: Biological Timekeeping
-
-
-
3
-
-
0347416704
-
A cyanobacterial circadian timing mechanism
-
Ditty J.L., et al. A cyanobacterial circadian timing mechanism. Annu. Rev. Genet. 37 (2003) 513-543
-
(2003)
Annu. Rev. Genet.
, vol.37
, pp. 513-543
-
-
Ditty, J.L.1
-
4
-
-
0003061304
-
Circadian rhythm in amino acid uptake by Synechococcus RF-1
-
Chen T.-H., et al. Circadian rhythm in amino acid uptake by Synechococcus RF-1. Plant Physiol. 97 (1991) 55-59
-
(1991)
Plant Physiol.
, vol.97
, pp. 55-59
-
-
Chen, T.-H.1
-
5
-
-
0029042379
-
Circadian orchestration of gene expression in cyanobacteria
-
Liu Y., et al. Circadian orchestration of gene expression in cyanobacteria. Genes Dev. 9 (1995) 1469-1478
-
(1995)
Genes Dev.
, vol.9
, pp. 1469-1478
-
-
Liu, Y.1
-
6
-
-
33744779947
-
Circadian rhythms in gene transcription imparted by chromosome compaction in the cyanobacterium Synechococcus elongatus
-
Smith R.M., and Williams S.B. Circadian rhythms in gene transcription imparted by chromosome compaction in the cyanobacterium Synechococcus elongatus. Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 8564-8569
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 8564-8569
-
-
Smith, R.M.1
Williams, S.B.2
-
7
-
-
0029790052
-
Circadian gating of cell division in cyanobacteria growing with average doubling times of less than 24 hours
-
Mori T., et al. Circadian gating of cell division in cyanobacteria growing with average doubling times of less than 24 hours. Proc. Natl. Acad. Sci. U. S. A. 93 (1996) 10183-10188
-
(1996)
Proc. Natl. Acad. Sci. U. S. A.
, vol.93
, pp. 10183-10188
-
-
Mori, T.1
-
8
-
-
4544254441
-
Circadian timing mechanism in the prokaryotic clock system of cyanobacteria
-
Iwasaki H., and Kondo T. Circadian timing mechanism in the prokaryotic clock system of cyanobacteria. J. Biol. Rhythms 19 (2004) 436-444
-
(2004)
J. Biol. Rhythms
, vol.19
, pp. 436-444
-
-
Iwasaki, H.1
Kondo, T.2
-
9
-
-
1842456940
-
Cyanobacterial circadian rhythms - timing is everything
-
Golden S.S., and Canales S.R. Cyanobacterial circadian rhythms - timing is everything. Nat. Rev. Microbiol. 1 (2003) 191-199
-
(2003)
Nat. Rev. Microbiol.
, vol.1
, pp. 191-199
-
-
Golden, S.S.1
Canales, S.R.2
-
10
-
-
33749235664
-
A circadian timing mechanism in the cyanobacteria
-
Williams S.B. A circadian timing mechanism in the cyanobacteria. Adv. Microb. Physiol. 52 (2006) 229-296
-
(2006)
Adv. Microb. Physiol.
, vol.52
, pp. 229-296
-
-
Williams, S.B.1
-
11
-
-
0022528868
-
Dinitrogen fixing endogenous rhythm in Synechococcus RF-1
-
Grobbelaar N., et al. Dinitrogen fixing endogenous rhythm in Synechococcus RF-1. FEMS Microbiol. Lett. 37 (1986) 173-177
-
(1986)
FEMS Microbiol. Lett.
, vol.37
, pp. 173-177
-
-
Grobbelaar, N.1
-
12
-
-
24944486210
-
High-throughput functional analysis of the Synechococcus elongatus PCC 7942 genome
-
Holtman C.K., et al. High-throughput functional analysis of the Synechococcus elongatus PCC 7942 genome. DNA Res. 12 (2005) 103-115
-
(2005)
DNA Res.
, vol.12
, pp. 103-115
-
-
Holtman, C.K.1
-
13
-
-
34248575624
-
Specialized techniques for site-directed mutagenesis in cyanobacteria
-
Rosato E. (Ed), Humana Press
-
Clerico E.M., et al. Specialized techniques for site-directed mutagenesis in cyanobacteria. In: Rosato E. (Ed). Methods in Molecular Biology (2007), Humana Press 155-172
-
(2007)
Methods in Molecular Biology
, pp. 155-172
-
-
Clerico, E.M.1
-
14
-
-
0032483510
-
Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria
-
Ishiura M., et al. Expression of a gene cluster kaiABC as a circadian feedback process in cyanobacteria. Science 281 (1998) 1519-1523
-
(1998)
Science
, vol.281
, pp. 1519-1523
-
-
Ishiura, M.1
-
15
-
-
0034600948
-
Circadian clock-protein expression in cyanobacteria: rhythms and phase setting
-
Xu Y., et al. Circadian clock-protein expression in cyanobacteria: rhythms and phase setting. EMBO J. 19 (2000) 3349-3357
-
(2000)
EMBO J.
, vol.19
, pp. 3349-3357
-
-
Xu, Y.1
-
16
-
-
0038219594
-
Cyanobacterial circadian clockwork: roles of KaiA, KaiB and the kaiBC promoter in regulating KaiC
-
Xu Y., et al. Cyanobacterial circadian clockwork: roles of KaiA, KaiB and the kaiBC promoter in regulating KaiC. EMBO J. 22 (2003) 2117-2126
-
(2003)
EMBO J.
, vol.22
, pp. 2117-2126
-
-
Xu, Y.1
-
17
-
-
23844486680
-
Stability of the Synechococcus elongatus PCC 7942 circadian clock under directed anti-phase expression of the kai genes
-
Ditty J.L., et al. Stability of the Synechococcus elongatus PCC 7942 circadian clock under directed anti-phase expression of the kai genes. Microbiology 151 (2005) 2605-2613
-
(2005)
Microbiology
, vol.151
, pp. 2605-2613
-
-
Ditty, J.L.1
-
18
-
-
12244296161
-
No transcription-translation feedback in circadian rhythm of KaiC phosphorylation
-
Tomita J., et al. No transcription-translation feedback in circadian rhythm of KaiC phosphorylation. Science 307 (2005) 251-254
-
(2005)
Science
, vol.307
, pp. 251-254
-
-
Tomita, J.1
-
19
-
-
17244373578
-
Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro
-
Nakajima M., et al. Reconstitution of circadian oscillation of cyanobacterial KaiC phosphorylation in vitro. Science 308 (2005) 414-415
-
(2005)
Science
, vol.308
, pp. 414-415
-
-
Nakajima, M.1
-
20
-
-
4143103631
-
Visualizing a circadian clock protein: crystal structure of KaiC and functional insights
-
Pattanayek R., et al. Visualizing a circadian clock protein: crystal structure of KaiC and functional insights. Mol. Cell 15 (2004) 375-388
-
(2004)
Mol. Cell
, vol.15
, pp. 375-388
-
-
Pattanayek, R.1
-
21
-
-
4644325554
-
Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses
-
Xu Y., et al. Identification of key phosphorylation sites in the circadian clock protein KaiC by crystallographic and mutagenetic analyses. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 13933-13938
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 13933-13938
-
-
Xu, Y.1
-
22
-
-
4644310259
-
Role of KaiC phosphorylation in the circadian clock system of Synechococcus elongatus PCC 7942
-
Nishiwaki T., et al. Role of KaiC phosphorylation in the circadian clock system of Synechococcus elongatus PCC 7942. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 13927-13932
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 13927-13932
-
-
Nishiwaki, T.1
-
23
-
-
0037180437
-
Structure and function from the circadian clock protein KaiA of Synechococcus elongatus: a potential clock input mechanism
-
Williams S.B., et al. Structure and function from the circadian clock protein KaiA of Synechococcus elongatus: a potential clock input mechanism. Proc. Natl. Acad. Sci. U. S. A. 99 (2002) 15357-15362
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 15357-15362
-
-
Williams, S.B.1
-
24
-
-
4644268016
-
KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacteria circadian clock system
-
Kitayama Y., et al. KaiB functions as an attenuator of KaiC phosphorylation in the cyanobacteria circadian clock system. EMBO J. 22 (2003) 1-8
-
(2003)
EMBO J.
, vol.22
, pp. 1-8
-
-
Kitayama, Y.1
-
25
-
-
0037180442
-
KaiA-stimulated KaiC phosphorylation in circadian timing loops in cyanobacteria
-
Iwasaki H., et al. KaiA-stimulated KaiC phosphorylation in circadian timing loops in cyanobacteria. Proc. Natl. Acad. Sci. U. S. A. 99 (2002) 15788-15793
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 15788-15793
-
-
Iwasaki, H.1
-
26
-
-
16844378669
-
A novel mutation in kaiC affects resetting of the cyanobacterial circadian clock
-
Kiyohara Y.B., et al. A novel mutation in kaiC affects resetting of the cyanobacterial circadian clock. J. Bacteriol. 187 (2005) 2559-2564
-
(2005)
J. Bacteriol.
, vol.187
, pp. 2559-2564
-
-
Kiyohara, Y.B.1
-
27
-
-
33751214536
-
Quinone sensing by the circadian input kinase of the cyanobacterial circadian clock
-
Ivleva N.B., et al. Quinone sensing by the circadian input kinase of the cyanobacterial circadian clock. Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 17468-17473
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 17468-17473
-
-
Ivleva, N.B.1
-
28
-
-
0037168601
-
Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA
-
Mori T., et al. Circadian clock protein KaiC forms ATP-dependent hexameric rings and binds DNA. Proc. Natl. Acad. Sci. U. S. A. 99 (2002) 17203-17208
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 17203-17208
-
-
Mori, T.1
-
29
-
-
3342889359
-
Structure of the C-terminal domain of the clock protein KaiA in complex with a KaiC-derived peptide: implications for KaiC regulation
-
Vakonakis I., and LiWang A.C. Structure of the C-terminal domain of the clock protein KaiA in complex with a KaiC-derived peptide: implications for KaiC regulation. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 10925-10930
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 10925-10930
-
-
Vakonakis, I.1
LiWang, A.C.2
-
30
-
-
2442421006
-
Crystal structure of circadian clock protein KaiA from Synechococcus elongatus
-
Ye S., et al. Crystal structure of circadian clock protein KaiA from Synechococcus elongatus. J. Biol. Chem. 279 (2004) 20511-20518
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 20511-20518
-
-
Ye, S.1
-
31
-
-
2442569769
-
Anabaena circadian clock proteins KaiA and KaiB reveal a potential common binding site to their partner KaiC
-
Garces R.G., et al. Anabaena circadian clock proteins KaiA and KaiB reveal a potential common binding site to their partner KaiC. EMBO J. 23 (2004) 1688-1698
-
(2004)
EMBO J.
, vol.23
, pp. 1688-1698
-
-
Garces, R.G.1
-
32
-
-
21444458211
-
Tetrameric architecture of the circadian clock protein KaiB. A novel interface for intermolecular interactions and its impact on the circadian rhythm
-
Hitomi K., et al. Tetrameric architecture of the circadian clock protein KaiB. A novel interface for intermolecular interactions and its impact on the circadian rhythm. J. Biol. Chem. 280 (2005) 19127-19135
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 19127-19135
-
-
Hitomi, K.1
-
33
-
-
34247232450
-
Elucidating the ticking of an in vitro circadian clockwork
-
Mori T., et al. Elucidating the ticking of an in vitro circadian clockwork. PLoS Biol. 5 (2007) e93
-
(2007)
PLoS Biol.
, vol.5
-
-
Mori, T.1
-
34
-
-
33746070819
-
Expression of the circadian clock-related gene pex in cyanobacteria increases in darkness and is required to delay the clock
-
Takai N., et al. Expression of the circadian clock-related gene pex in cyanobacteria increases in darkness and is required to delay the clock. J. Biol. Rhythms 21 (2006) 235-244
-
(2006)
J. Biol. Rhythms
, vol.21
, pp. 235-244
-
-
Takai, N.1
-
35
-
-
33847691603
-
Structural and biochemical characterization of a cyanobacterium circadian clock-modifier protein
-
Arita K., et al. Structural and biochemical characterization of a cyanobacterium circadian clock-modifier protein. J. Biol. Chem. 282 (2007) 1128-1135
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 1128-1135
-
-
Arita, K.1
-
36
-
-
0031900732
-
A period-extender gene, pex, that extends the period of the circadian clock in the cyanobacterium Synechococcus sp. strain PCC 7942
-
Kutsuna S., et al. A period-extender gene, pex, that extends the period of the circadian clock in the cyanobacterium Synechococcus sp. strain PCC 7942. J. Bacteriol. 180 (1998) 2167-2174
-
(1998)
J. Bacteriol.
, vol.180
, pp. 2167-2174
-
-
Kutsuna, S.1
-
37
-
-
0034604449
-
CikA, a bacteriophytochrome that resets the cyanobacterial circadian clock
-
Schmitz O., et al. CikA, a bacteriophytochrome that resets the cyanobacterial circadian clock. Science 289 (2000) 765-768
-
(2000)
Science
, vol.289
, pp. 765-768
-
-
Schmitz, O.1
-
38
-
-
16244387910
-
Identification of cyanobacterial cell division genes by comparative and mutational analyses
-
Miyagishima S.Y., et al. Identification of cyanobacterial cell division genes by comparative and mutational analyses. Mol. Microbiol. 56 (2005) 126-143
-
(2005)
Mol. Microbiol.
, vol.56
, pp. 126-143
-
-
Miyagishima, S.Y.1
-
39
-
-
0033791468
-
Two-component signal transduction
-
Stock A., et al. Two-component signal transduction. Annu. Rev. Biochem. 69 (2000) 183-215
-
(2000)
Annu. Rev. Biochem.
, vol.69
, pp. 183-215
-
-
Stock, A.1
-
40
-
-
0037805675
-
Biochemical properties of CikA, an unusual phytochrome-like histidine protein kinase that resets the circadian clock in Synechococcus elongatus PCC 7942
-
Mutsuda M., et al. Biochemical properties of CikA, an unusual phytochrome-like histidine protein kinase that resets the circadian clock in Synechococcus elongatus PCC 7942. J. Biol. Chem. 278 (2003) 19102-19110
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 19102-19110
-
-
Mutsuda, M.1
-
41
-
-
33847328049
-
NMR structure of the pseudo-receiver domain of CikA
-
Gao T., et al. NMR structure of the pseudo-receiver domain of CikA. Protein Sci. 16 (2007) 465-475
-
(2007)
Protein Sci.
, vol.16
, pp. 465-475
-
-
Gao, T.1
-
42
-
-
33645817722
-
The pseudo-receiver domain of CikA regulates cyanobacterial circadian input
-
Zhang X., et al. The pseudo-receiver domain of CikA regulates cyanobacterial circadian input. Mol. Microbiol. 60 (2006) 658-668
-
(2006)
Mol. Microbiol.
, vol.60
, pp. 658-668
-
-
Zhang, X.1
-
43
-
-
0037315039
-
ldpA encodes an iron-sulfur protein involved in light-dependent modulation of the circadian period in the cyanobacterium Synechococcus elongatus PCC 7942
-
Katayama M., et al. ldpA encodes an iron-sulfur protein involved in light-dependent modulation of the circadian period in the cyanobacterium Synechococcus elongatus PCC 7942. J. Bacteriol. 185 (2003) 1415-1422
-
(2003)
J. Bacteriol.
, vol.185
, pp. 1415-1422
-
-
Katayama, M.1
-
44
-
-
17144372902
-
LdpA: a component of the circadian clock senses redox state of the cell
-
Ivleva N.B., et al. LdpA: a component of the circadian clock senses redox state of the cell. EMBO J. 24 (2005) 1202-1210
-
(2005)
EMBO J.
, vol.24
, pp. 1202-1210
-
-
Ivleva, N.B.1
-
45
-
-
0032555144
-
Resonating circadian clocks enhance fitness in cyanobacteria
-
Ouyang Y., et al. Resonating circadian clocks enhance fitness in cyanobacteria. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 8660-8664
-
(1998)
Proc. Natl. Acad. Sci. U. S. A.
, vol.95
, pp. 8660-8664
-
-
Ouyang, Y.1
-
46
-
-
4344699146
-
The adaptive value of circadian clocks: an experimental assessment in cyanobacteria
-
Woelfle M.A., et al. The adaptive value of circadian clocks: an experimental assessment in cyanobacteria. Curr. Biol. 14 (2004) 1481-1486
-
(2004)
Curr. Biol.
, vol.14
, pp. 1481-1486
-
-
Woelfle, M.A.1
-
47
-
-
33750741439
-
No promoter left behind: global circadian gene expression in cyanobacteria
-
Woelfle M.A., and Johnson C.H. No promoter left behind: global circadian gene expression in cyanobacteria. J. Biol. Rhythms 21 (2006) 419-431
-
(2006)
J. Biol. Rhythms
, vol.21
, pp. 419-431
-
-
Woelfle, M.A.1
Johnson, C.H.2
-
48
-
-
33747061828
-
A KaiC-associating SasA-RpaA two-component regulatory system as a major circadian timing mediator in cyanobacteria
-
Takai N., et al. A KaiC-associating SasA-RpaA two-component regulatory system as a major circadian timing mediator in cyanobacteria. Proc. Natl. Acad. Sci. U. S. A. 103 (2006) 12109-12114
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 12109-12114
-
-
Takai, N.1
-
49
-
-
0036756344
-
Sequence-specific resonance assignments of the N-terminal, 105-residue KaiC-interacting domain of SasA, a protein necessary for a robust circadian rhythm in Synechococcus elongatus
-
Klewer D.A., et al. Sequence-specific resonance assignments of the N-terminal, 105-residue KaiC-interacting domain of SasA, a protein necessary for a robust circadian rhythm in Synechococcus elongatus. J. Biomol. NMR 24 (2002) 77-78
-
(2002)
J. Biomol. NMR
, vol.24
, pp. 77-78
-
-
Klewer, D.A.1
-
50
-
-
0034646509
-
A KaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria
-
Iwasaki H., et al. A KaiC-interacting sensory histidine kinase, SasA, necessary to sustain robust circadian oscillation in cyanobacteria. Cell 101 (2000) 223-233
-
(2000)
Cell
, vol.101
, pp. 223-233
-
-
Iwasaki, H.1
-
51
-
-
1642555774
-
Global gene repression by KaiC as a master process of prokaryotic circadian system
-
Nakahira Y., et al. Global gene repression by KaiC as a master process of prokaryotic circadian system. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 881-885
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 881-885
-
-
Nakahira, Y.1
-
52
-
-
33846150032
-
labA: a novel gene required for negative feedback regulation of the cyanobacterial circadian clock protein KaiC
-
Taniguchi Y., et al. labA: a novel gene required for negative feedback regulation of the cyanobacterial circadian clock protein KaiC. Genes Dev. 21 (2007) 60-70
-
(2007)
Genes Dev.
, vol.21
, pp. 60-70
-
-
Taniguchi, Y.1
-
53
-
-
1642285223
-
Phase determination of circadian gene expression in Synechococcus elongatus PCC 7942
-
Min H., et al. Phase determination of circadian gene expression in Synechococcus elongatus PCC 7942. J. Biol. Rhythms 19 (2004) 103-112
-
(2004)
J. Biol. Rhythms
, vol.19
, pp. 103-112
-
-
Min, H.1
-
54
-
-
4644261898
-
Meshing the gears of the cyanobacterial circadian clock
-
Golden S.S. Meshing the gears of the cyanobacterial circadian clock. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 13697-13698
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 13697-13698
-
-
Golden, S.S.1
-
55
-
-
0037462789
-
Circadian formation of clock protein complexes by KaiA, KaiB, KaiC and SasA in cyanobacteria
-
Kageyama H., et al. Circadian formation of clock protein complexes by KaiA, KaiB, KaiC and SasA in cyanobacteria. J. Biol. Chem. 278 (2002) 2388-2395
-
(2002)
J. Biol. Chem.
, vol.278
, pp. 2388-2395
-
-
Kageyama, H.1
-
56
-
-
0033000930
-
cpmA, a gene involved in an output pathway of the cyanobacterial circadian system
-
Katayama M., et al. cpmA, a gene involved in an output pathway of the cyanobacterial circadian system. J. Bacteriol. 181 (1999) 3516-3524
-
(1999)
J. Bacteriol.
, vol.181
, pp. 3516-3524
-
-
Katayama, M.1
-
57
-
-
0036285605
-
Roles for sigma factors in global circadian regulation of the cyanobacterial genome
-
Nair U., et al. Roles for sigma factors in global circadian regulation of the cyanobacterial genome. J. Bacteriol. 184 (2002) 3530-3538
-
(2002)
J. Bacteriol.
, vol.184
, pp. 3530-3538
-
-
Nair, U.1
-
58
-
-
34247641768
-
Shifting nanoscopic clock gears
-
Golden S.S., et al. Shifting nanoscopic clock gears. Nat. Struct. Mol. Biol. 14 (2007) 362-363
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 362-363
-
-
Golden, S.S.1
|