Photocycle of the LOV-STAS protein from the pathogen listeria monocytogenes.

Photochemistry and Photobiology

Volumn 89, Issue 2, 2013, Pages 361-369

  Chan, Ruby H ^a   Lewis, James W ^a   Bogomolni, Roberto A ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARGININE; BACTERIAL PROTEIN; FLAVINE MONONUCLEOTIDE; LYSINE; RECOMBINANT PROTEIN; VIRULENCE FACTOR;

AMINO ACID SEQUENCE; ARTICLE; BACILLUS SUBTILIS; CHEMISTRY; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; GENETICS; KINETICS; LIGHT; LISTERIA MONOCYTOGENES; MOLECULAR GENETICS; PROTEIN BINDING; RADIATION EXPOSURE; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; ARGININE; BACILLUS SUBTILIS; BACTERIAL PROTEINS; ESCHERICHIA COLI; FLAVIN MONONUCLEOTIDE; GENE EXPRESSION REGULATION, BACTERIAL; KINETICS; LIGHT; LISTERIA MONOCYTOGENES; LYSINE; MOLECULAR SEQUENCE DATA; PROTEIN BINDING; RECOMBINANT PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; VIRULENCE FACTORS;

BACILLUS SUBTILIS; BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; LISTERIA; LISTERIA MONOCYTOGENES;

EID: 84874731065     PISSN: 00318655     EISSN: 17511097     Source Type: Journal    
DOI: 10.1111/php.12004     Document Type: Article

References (49)

1. Avila-Perez, M., K. J. Hellingwerf, and, R. Kort, (2006) Blue light activates the sigma(B)-dependent stress response of Bacillus subtilis via YtvA. J. Bacteriol. 188, 6411-6414.
2. Wiedmann, M., T. J. Arvik, R. J. Hurley, and, K. J. Boor, (1998) General stress transcription factor sigma(B) and its role in acid tolerance and virulence of Listeria monocytogenes. J. Bacteriol. 180, 3650-3656.
3. Taylor, B. L., and, I. B. Zhulin, (1999) PAS domains: Internal sensors of oxygen, redox potential, and light. Microbiol. Mol. Biol. Rev. 63, 479-506.
4. Christie, J. M., P. Reymond, G. K. Powell, P. Bernasconi, A. A. Raibekas, E. Liscum, and, W. R. Briggs, (1998) Arabidopsis NPH1: A flavoprotein with the properties of a photoreceptor for phototropism. Science 282, 1698-1701.
5. Christie, J. M., M. Salomon, K. Nozue, M. Wada, and, W. R. Briggs, (1999) LOV (light, oxygen, or voltage) domains of the blue-light photoreceptor phototropin (nph1): Binding sites for the chromophore flavin mononucleotide. Proc. Natl. Acad. Sci. U. S. A. 96, 8779-8783.
6. He, Q., P. Cheng, Y. Yang, L. Wang, K. Gardner, and, Y. Liu, (2002) White collar-1, a DNA binding transcription factor and a light sensor. Science 297, 840-843.
7. Schwerdtfeger, C., and, H. Linden, (2003) VIVID is a flavoprotein and serves as a fungal blue light photoreceptor for photoadaptation. EMBO J. 22, 4846-4855.
8. Crosson, S., S. Rajagopal, and, K. Moffat, (2003) The LOV domain family: Photoresponsive signaling modules coupled to diverse output domains. Biochemistry 42, 2-10.
9. Swartz, T. E., T. S. Tseng, M. A. Frederickson, G. Paris, D. J. Comerci, G. Rajashekara, J. G. Kim, M. B. Mudgett, G. A. Splitter, R. A. Ugalde, F. A. Goldbaum, W. R. Briggs, and, R. A. Bogomolni, (2007) Blue-light-activated histidine kinases: Two-component sensors in bacteria. Science 317, 1090-1093.
10. Purcell, E. B., D. Siegal-Gaskins, D. C. Rawling, A. Fiebig, and, S. Crosson, (2007) A photosensory two-component system regulates bacterial cell attachment. Proc. Natl. Acad. Sci. U. S. A. 104, 18241-18246.
11. Aravind, L., and, E. V. Koonin, (2000) The STAS domain-a link between anion transporters and antisigma-factor antagonists. Curr. Biol. 10, R53-R55.
12. Freitag, N. E., G. C. Port, and, M. D. Miner, (2009) Listeria monocytogenes-from saprophyte to intracellular pathogen. Nat. Rev. Microbiol. 7, 623-628.
13. Gahan, C. G. M., and, C. Hill, (2005) Gastrointestinal phase of Listeria monocytogenes infection. J. Appl. Microbiol. 98, 1345-1353.
14. Garner, M. R., B. L. Njaa, M. Wiedmann, and, K. J. Boor, (2006) Sigma B contributes to Listeria monocytogenes gastrointestinal infection but not to systemic spread in the guinea pig infection model. Infect. Immun. 74, 876-886.
15. Kim, H., K. J. Boor, and, H. Marquis, (2004) Listeria monocytogenes sigmaB contributes to invasion of human intestinal epithelial cells. Infect. Immun. 72, 7374-7378.
16. Ondrusch, N., and, J. Kreft,. (2011) Blue and red light modulates SigB-dependent gene transcription, swimming motility and invasiveness in Listeria monocytogenes. PLoS ONE 6, 1-16.
17. Crosson, S., and, K. Moffat, (2001) Structure of a flavin-binding plant photoreceptor domain: Insights into light-mediated signal transduction. Proc. Natl. Acad. Sci. U. S. A. 98, 2995-3000.
18. Fedorov, R., I. Schlichting, E. Hartmann, T. Domratcheva, M. Fuhrmann, and, P. Hegemann, (2003) Crystal structures and molecular mechanism of a light-induced signaling switch: The Phot-LOV1 domain from Chlamydomonas reinhardtii. Biophys. J. 84, 2474-2482.
19. Moglich, A., and, K. Moffat, (2007) Structural basis for light-dependent signaling in the dimeric LOV domain of the photosensor YtvA. J. Mol. Biol. 373, 112-126.
20. Zoltowski, B. D., C. Schwerdtfeger, J. Widom, J. J. Loros, A. M. Bilwes, J. C. Dunlap, and, B. R. Crane, (2007) Conformational switching in the fungal light sensor vivid. Science 316, 1054-1057.
21. Losi, A., E. Polverini, B. Quest, and, W. Gartner, (2002) First evidence for phototropin-related blue-light receptors in prokaryotes. Biophys. J. 82, 2627-2634.
22. Caetano-anolles, G., D. K. Cristestes, and, W. D. Bauer, (1988) Chemotaxis of Rhizobium-meliloti to the plant flavone luteolin requires functional nodulation genes. J. Bacteriol. 170, 3164-3169.
23. Crosson, S., and, K. Moffat, (2002) Photoexcitd structure of a plant photoreceptor domain reveals a light-driven molecular switch. Plant Cell 14, 1067-1075.
24. Salomon, M., J. Christie, E. Knieb, U. Lempert, U., and, W. Briggs, (2000) Photochemical and mutational analysis of the FMN-binding domains of the plant blue light receptor, phototropin. Biochemistry 39, 9401-9410.
25. Salomon, M., W. Eisenreich, H. Durr, E. Schleicher, E. Knieb, V. Massey, W. Rudiger, F. Muller, A. Bacher, and, G. Richter, (2001) An optomechanical transducer in the blue light receptor phototropin from Avena sativa. Proc. Natl. Acad. Sci. U. S. A. 98, 12357-12361.
26. Swartz, T., S. Corchnoy, J. Christie, J. W. Lewis, I. Szundi, W. Briggs, and, R. Bogomolni, (2001) The photocycle of a flavin-binding domain of the blue light photoreceptor phototropin. J. Biol. Chem. 276, 36493-36500.
27. Losi, A., B. Quest, and, W. Gartner, (2003) Listening to the blue: The time-resolved thermodynamics of the bacterial blue-light receptor YtvA and its isolated LOV domain. Photochem. Photobiol. Sci. 2, 759-766.
28. Froehlich, A. C., Y. Liu, J. J. Loros, and, J. C. Dunlap, (2002) White Collar-1, a circadian blue light photoreceptor, binding to the frequency promoter. Science 297, 815-819.
29. Idnurm, A., and, S. Crosson, (2009) The photobiology of microbial pathogenesis. PLoS Pathog. 5, e1000470. DOI: 10. 1371/journal. ppat. 1000470
30. Lewis, J. W., and, D. S. Kliger, (1993) Microliter flow cell for measurement of irreversible optical absorbency transients. Rev. Sci. Instrum. 64, 2828-2833.
31. Lewis, J. W., and, D. S. Kliger, (2000) Absorption spectroscopy in studies of visual pigments: Spectral and kinetic characterization of intermediates. Methods Enzymol. 315, 164-178.
32. Kliger, D. S., J. W. Lewis, and, C. E. Randall, (1990) Polarized Light in Optics and Spectroscopy, Academic Press, Boston.
33. Szundi, I., J. W. Lewis, and, D. S. Kliger, (1997) Deriving reaction mechanisms from kinetic spectroscopy. Application to late rhodopsin intermediates. Biophys. J. 73, 688-702.
34. Shrager, R. I., and, R. W. Hendler, (1982) Titration of individual components in a mixture with resolution of difference spectra, pKs, and redox transitions. Anal. Chem. 54, 1147-1152.
35. Thorgeirsson, T. E., J. W. Lewis, S. E. Wallace-Williams, and, D. S. Kliger, (1992) Photolysis of rhodopsin results in deprotonation of its retinal Schiff's base prior to formation of metarhodopsin II. Photochem. Photobiol. 56, 1135-1144.
36. Georgiadis, K. E., N. I. Jhon, and, O. Einarsdottir, (1994) Time-resolved optical-absorption studies of intramolecular electron-transfer in cytochrome-c-oxidase. Biochemistry 33, 9245-9256.
37. Losi, A., (2004) The bacterial counterparts of plant phototropins. Photochem. Photobiol. Sci. 3, 566-574.
38. Lakowicz, J. R., (1999) Principles of Fluorescence Spectroscopy, 2nd ed., Kluwer Academic/Plenum Publishers, New York.
39. Buttani, V., A. Losi, E. Polverini, and, W. Gartner, (2006) Blue news: NTP binding properties of the blue-light sensitive YtvA protein from Bacillus subtilis. FEBS Lett. 580, 3818-3822.
40. Kaukinen, U., T. Venalainen, H. Lonnberg, and, M. Perakyla, (2003) The base sequence dependent flexibility of linear single-stranded oligoribonucleotides correlates with the reactivity of the phosphodiester bond. Org. Biomol. Chem. 1, 2439-2447.
41. Kennis, J., S. Crosson, M. Gauden, I. van Stokkum, K. Moffat, and, R. van Grondelle, (2003) Primary reactions of the LOV2 domain of phototropin, a plant blue-light photoreceptor. Biochemistry 42, 3385-3392.
42. Alexandre, M., J. Arents, R. Van Grondelle, K. Hellingwerf, and, J. Kennis, (2007) A base-catalyzed mechanism for dark state recovery in the Avena sativa phototropin-1 LOV2 domain. Biochemistry 46, 3129-3137.
43. Song, P. S., T. A. Moore, and, W. E. Kurtin, (1972) Molecular luminescence studies of flavins. 2. Interactions involving excited-states. Z. Naturforsch., B: Chem. Sci. B 27, 1011-1015.
44. Sun, M., P. S. Song, and, T. A. Moore, (1972) Molecular luminescence studies of flavins. 1. Excited-states of flavins. J. Am. Chem. Soc. 94, 1730-1740.
45. Stanley, R. J., and, H. Jang, (1999) Electronic structure measurements of oxidized flavins and flavin complexes using stark-effect spectroscopy. J. Phys. Chem. A 103, 8976-8984.
46. Kottke, T., J. Heberle, D. Hehn, B. Dick, and, P. Hegemann, (2002) Phot-LOV1: Photocycle of a blue-light receptor domain from the green alga Chlamydomonas reinhardtii. Biophys. J. 84, 1192-1201.
47. Tseng, T. S., M. A. Frederickson, W. R. Briggs, and, R. A. Bogomolni, (2010) Light-activated bacterial LOV-domain histidine kinases. Methods Enzymol. 471, 125-134.
48. Holzer, W., A. Penzkofer, M. Fuhrmann, and, P. Hegemann, (2002) Spectroscopic characterization of flavin mononucleotide bound to the LOV1 domain of Phot1 from Chlamydomonas reinhardtii. Photochem. Photobiol. 75, 479-487.
49. Corchnoy, S. B., T. E. Swartz, J. W. Lewis, I. Szundi, W. R. Briggs, and, R. A. Bogomolni, (2003) Intramolecular proton transfers and structural changes during the photocycle of the LOV2 domain of phototropin 1. J. Biol. Chem. 278, 724-731.