-
1
-
-
33645579264
-
Support vector machines for pattern classification
-
London, Springer
-
Abe, S. (2005). Support vector machines for pattern classification. London, Springer.
-
(2005)
-
-
Abe, S.1
-
2
-
-
0038758551
-
Statistical Algorithms Reference Guide
-
Affymetrix, Affymetrix, Inc., Santa Clara, CA
-
Affymetrix (2001). Statistical Algorithms Reference Guide, Affymetrix, Inc., Santa Clara, CA. www.affymetrix.com
-
(2001)
-
-
-
3
-
-
0141966130
-
Statistical Algorithms Description Document
-
Affymetrix, Affymetrix, Inc., Santa Clara, CA
-
Affymetrix (2002). Statistical Algorithms Description Document, Affymetrix, Inc., Santa Clara, CA.
-
(2002)
-
-
-
4
-
-
6344237981
-
Design and Performance of the GeneChipw Human Genome U133 Plus 2.0 and Human Genome U133A 2.0 Arrays - Technical Note
-
Affymetrix, Affymetrix, Inc., Santa Clara, CA
-
Affymetrix (2003). Design and Performance of the GeneChipw Human Genome U133 Plus 2.0 and Human Genome U133A 2.0 Arrays - Technical Note, Affymetrix, Inc., Santa Clara, CA.
-
(2003)
-
-
-
5
-
-
84885993049
-
GeneChipw Exon Array Design - Technical Note
-
Affymetrix, Affymetrix, Inc., Santa Clara, CA
-
Affymetrix (2005a). GeneChipw Exon Array Design - Technical Note, Affymetrix, Inc., Santa Clara, CA.
-
(2005)
-
-
-
6
-
-
33745322791
-
Guide to Probe Logarithmic Intensity Error (PLIER) Estimation
-
Affymetrix, Affymetrix, Inc., Santa Clara, CA
-
Affymetrix (2005b). Guide to Probe Logarithmic Intensity Error (PLIER) Estimation, Affymetrix, Inc., Santa Clara, CA.
-
(2005)
-
-
-
7
-
-
38049099892
-
Affymetrix Expression ConsoleTM Software Version 1.0-User Guide
-
Affymetrix, Affymetrix, Inc., Santa Clara, CA
-
Affymetrix (2006). Affymetrix Expression ConsoleTM Software Version 1.0-User Guide, Affymetrix, Inc., Santa Clara, CA.
-
(2006)
-
-
-
8
-
-
84886019768
-
GeneChipw Gene 1
-
Affymetrix, Affymetrix, Inc., Santa Clara, CA
-
Affymetrix (2007). GeneChipw Gene 1.0 ST Array Design - Technical Note, Affymetrix, Inc., Santa Clara, CA.
-
(2007)
-
-
-
9
-
-
84885996204
-
GeneChipw HT HG-U133{thorn}PM Array Plate
-
Affymetrix, Affymetrix, Inc., Santa Clara, CA
-
Affymetrix (2008a). GeneChipw HT HG-U133{thorn}PM Array Plate, Affymetrix, Inc., Santa Clara, CA.
-
(2008)
-
-
-
10
-
-
84886073113
-
GeneChipw Human Exon 1.0 ST Array - Design Statistics Summary
-
Affymetrix, Affymetrix, Inc., Santa Clara, CA
-
Affymetrix (2008b). GeneChipw Human Exon 1.0 ST Array - Design Statistics Summary, Affymetrix, Inc., Santa Clara, CA.
-
(2008)
-
-
-
11
-
-
0011203701
-
Mehrdimensionale Varianzanalyse: Hypothesenprüfung, Dimensionserniedrigung, Diskrimination bei multivariaten Beobachtungen
-
Berlin: Akademie-Verlag
-
Ahrens, H. and J. Läuter (1974). Mehrdimensionale Varianzanalyse: Hypothesenprüfung, Dimensionserniedrigung, Diskrimination bei multivariaten Beobachtungen. Berlin: Akademie-Verlag.
-
(1974)
-
-
Ahrens, H.1
Läuter, J.2
-
12
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
Alizadeh, A. A., M. B. Eisen, R. E. Davis, C. Ma, I. S. Lossos, A. Rosenwald (2000). Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 403(6769): 503-511.
-
(2000)
Nature
, vol.403
, Issue.6769
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
Rosenwald, A.6
-
13
-
-
0004493166
-
On the approximability of minimizing nonzero variables or unsatisfied relations in linear systems
-
Amaldi, E. and V. Kann (1998). On the approximability of minimizing nonzero variables or unsatisfied relations in linear systems. Theoretical Computer Science 209: 237-260.
-
(1998)
Theoretical Computer Science
, vol.209
, pp. 237-260
-
-
Amaldi, E.1
Kann, V.2
-
14
-
-
5144234594
-
Exploration and analysis of DNA microarray and protein array data
-
Hoboken, NJ: Wiley
-
Amaratunga, D. and J. Cabrera (2004). Exploration and analysis of DNA microarray and protein array data. Hoboken, NJ: Wiley.
-
(2004)
-
-
Amaratunga, D.1
Cabrera, J.2
-
15
-
-
0037076322
-
Selection bias in gene extraction on the basis of microarray gene-expression data
-
Ambroise, C. and G. J. McLachlan (2002). Selection bias in gene extraction on the basis of microarray gene-expression data. Proceedings of the National Academy of Science 99(10): 6562-6566.
-
(2002)
Proceedings of the National Academy of Science
, vol.99
, Issue.10
, pp. 6562-6566
-
-
Ambroise, C.1
McLachlan, G.J.2
-
16
-
-
55949125130
-
Variable breakpoints target PAX5 in patients with dicentric chromosomes: a model for the basis of unbalanced translocations in cancer
-
An, Q., S. L. Wright, Z. J. Konn, E. Matheson, L. Minto, A. V. Moorman (2008). Variable breakpoints target PAX5 in patients with dicentric chromosomes: a model for the basis of unbalanced translocations in cancer. Proceedings of the National Academy of Science USA 105(44): 17050-17054.
-
(2008)
Proceedings of the National Academy of Science USA
, vol.105
, Issue.44
, pp. 17050-17054
-
-
An, Q.1
Wright, S.L.2
Konn, Z.J.3
Matheson, E.4
Minto, L.5
Moorman, A.V.6
-
17
-
-
0003648234
-
An introduction to multivariate statistical analysis
-
Hoboken, NJ: Wiley-Interscience
-
Anderson, T. W. (2003). An introduction to multivariate statistical analysis. Hoboken, NJ: Wiley-Interscience.
-
(2003)
-
-
Anderson, T.W.1
-
18
-
-
35748978234
-
Empirical characterization of random forest variable importance measures
-
Archer, K. J. and R. V. Kimes (2008). Empirical characterization of random forest variable importance measures. Computational Statistics & Data Analysis 52: 2249-2260.
-
(2008)
Computational Statistics & Data Analysis
, vol.52
, pp. 2249-2260
-
-
Archer, K.J.1
Kimes, R.V.2
-
19
-
-
84889345428
-
Microarray approaches to autoantibody profiling
-
In: Van Eyk, J. E. and M. J. Dunn, editors. Clinical proteomics: From diagnosis to therapy. Weinheim: Wiley-VCH
-
Astle, J. M. and T. Kodadek (2008). Microarray approaches to autoantibody profiling. In: Van Eyk, J. E. and M. J. Dunn, editors. Clinical proteomics: From diagnosis to therapy. Weinheim: Wiley-VCH, pp. 511-532.
-
(2008)
, pp. 511-532
-
-
Astle, J.M.1
Kodadek, T.2
-
21
-
-
84885968050
-
Methods for classifying nucleic acids and polypeptides
-
US Patent 7016788, 21 March 2006
-
Bader, J. S., Y. Liu and D. M. Dziuda (2006). Methods for classifying nucleic acids and polypeptides. US Patent 7016788, 21 March 2006.
-
(2006)
-
-
Bader, J.S.1
Liu, Y.2
Dziuda, D.M.3
-
22
-
-
0034113675
-
Serendipity in bioinformatics, the tribulations of a Swiss bioinformatician through exciting times
-
Bairoch, A. (2000). Serendipity in bioinformatics, the tribulations of a Swiss bioinformatician through exciting times! Bioinformatics 16(1): 48-64.
-
(2000)
Bioinformatics
, vol.16
, Issue.1
, pp. 48-64
-
-
Bairoch, A.1
-
23
-
-
84886050182
-
UniProt Knowledgebase: Swiss-Prot Protein Knowledgebase, TrEMBL Protein Database
-
User Manual; Release 14.4 of 04-Nov-2008, Swiss Institute of Bioinformatics and European Bioinformatics Institute
-
Bairoch, A., R. Apweiler and C. H. Wu (2008). UniProt Knowledgebase: Swiss-Prot Protein Knowledgebase, TrEMBL Protein Database. User Manual; Release 14.4 of 04-Nov-2008, Swiss Institute of Bioinformatics and European Bioinformatics Institute. www.expasy.ch
-
(2008)
-
-
Bairoch, A.1
Apweiler, R.2
Wu, C.H.3
-
24
-
-
21444453083
-
In biomarkers we trust
-
Baker, M. (2005). In biomarkers we trust. Nature Biotechnology 23(3): 297-304.
-
(2005)
Nature Biotechnology
, vol.23
, Issue.3
, pp. 297-304
-
-
Baker, M.1
-
25
-
-
84885981867
-
ProteinProspector/MS-Fit, UCSF Mass Spectrometry Facility
-
Baker, P. R. and K. R. Clauser (2008). ProteinProspector/MS-Fit, UCSF Mass Spectrometry Facility. http://prospector.ucsf.edu
-
(2008)
-
-
Baker, P.R.1
Clauser, K.R.2
-
26
-
-
33646203015
-
Multiplexed protein array platforms for analysis of autoimmune diseases
-
Balboni, I., S. M. Chan, M. Kattah, J. D. Tenenbaum, A. J. Butte and P. J. Utz (2006). Multiplexed protein array platforms for analysis of autoimmune diseases. Annual Review of Immunology 24: 391-418.
-
(2006)
Annual Review of Immunology
, vol.24
, pp. 391-418
-
-
Balboni, I.1
Chan, S.M.2
Kattah, M.3
Tenenbaum, J.D.4
Butte, A.J.5
Utz, P.J.6
-
27
-
-
19344365567
-
Submission of microarray data to public repositories
-
Ball, C. A., A. Brazma, H. Causton, S. Chervitz, R. Edgar, P. Hingamp (2004). Submission of microarray data to public repositories. PLoS Biology 2(9): 1276-1277.
-
(2004)
PLoS Biology
, vol.2
, Issue.9
, pp. 1276-1277
-
-
Ball, C.A.1
Brazma, A.2
Causton, H.3
Chervitz, S.4
Edgar, R.5
Hingamp, P.6
-
28
-
-
1842847930
-
An open letter to the scientific journals
-
Ball, C. A., G. Sherlock, H. Parkinson, P. Rocca-Sera, C. Brooksbank, H. Causton (2002). An open letter to the scientific journals. Bioinformatics 18(11): 1409.
-
(2002)
Bioinformatics
, vol.18
, Issue.11
, pp. 1409
-
-
Ball, C.A.1
Sherlock, G.2
Parkinson, H.3
Rocca-sera, P.4
Brooksbank, C.5
Causton, H.6
-
29
-
-
27144486151
-
Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms
-
Barnes, M., J. Freudenberg, S. Thompson, B. Aronow and P. Pavlidis (2005). Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms. Nucleic Acids Research 33(18): 5914-5923.
-
(2005)
Nucleic Acids Research
, vol.33
, Issue.18
, pp. 5914-5923
-
-
Barnes, M.1
Freudenberg, J.2
Thompson, S.3
Aronow, B.4
Pavlidis, P.5
-
30
-
-
13444304325
-
NCBI GEO: mining millions of expression profiles-database and tools
-
Barrett, T., T. O. Suzek, D. B. Troup, S. E.Wilhite,W.-C. Ngau, P. Ledoux (2005). NCBI GEO: mining millions of expression profiles-database and tools. Nucleic Acids Research 33: D562-D566.
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Barrett, T.1
Suzek, T.O.2
Troup, D.B.3
Wilhite, S.E.4
Ngau, W.-C.5
Ledoux, P.6
-
31
-
-
33846064113
-
NCBI GEO: mining tens of millions of expression profiles-database and tools update
-
Barrett, T., D. B. Troup, S. E. Wilhite, P. Ledoux, D. Rudnev, C. Evangelista (2007). NCBI GEO: mining tens of millions of expression profiles-database and tools update. Nucleic Acids Research 35: D760-D765.
-
(2007)
Nucleic Acids Research
, vol.35
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Rudnev, D.5
Evangelista, C.6
-
33
-
-
0004020376
-
Adaptive control processes: a guided tour
-
Princeton, NJ: Princeton University Press
-
Bellman, R. E. (1961). Adaptive control processes: a guided tour. Princeton, NJ: Princeton University Press.
-
(1961)
-
-
Bellman, R.E.1
-
35
-
-
0001907967
-
Support vector machines: Hype or hallelujah
-
Bennett, K. P. and C. Campbell (2000). Support vector machines: Hype or hallelujah. SIGKDD Explorations 2(2): 1-13.
-
(2000)
SIGKDD Explorations
, vol.2
, Issue.2
, pp. 1-13
-
-
Bennett, K.P.1
Campbell, C.2
-
36
-
-
0038063029
-
Proteome analysis by two-dimensional gel electrophoresis and mass spectrometry: strengths and limitations
-
Beranova-Giorgianni, S. (2003). Proteome analysis by two-dimensional gel electrophoresis and mass spectrometry: strengths and limitations. Trends in Analytical Chemistry 22(5): 273-281.
-
(2003)
Trends in Analytical Chemistry
, vol.22
, Issue.5
, pp. 273-281
-
-
Beranova-giorgianni, S.1
-
37
-
-
84919846358
-
Introduction to genomic and proteomic data analysis
-
In: Dubitzky, W., M. Granzow and D. P. Berrar, editors. Fundamentals of data mining in genomics and proteomics. New York: Springer
-
Berrar, D. P., M. Granzowand W. Dubitzky (2007). Introduction to genomic and proteomic data analysis. In: Dubitzky, W., M. Granzow and D. P. Berrar, editors. Fundamentals of data mining in genomics and proteomics. New York: Springer, pp. 1-37.
-
(2007)
, pp. 1-37
-
-
Berrar, D.P.1
Granzowand, M.2
Dubitzky, W.3
-
38
-
-
0000000356
-
Second-order properties of an extrapolated bootstrap without replacement under weak assumptions
-
Bertail, P. (1997). Second-order properties of an extrapolated bootstrap without replacement under weak assumptions. Bernoulli 3(2): 149-179.
-
(1997)
Bernoulli
, vol.3
, Issue.2
, pp. 149-179
-
-
Bertail, P.1
-
39
-
-
43049132944
-
Clinical proteomics and breast cancer: strategies for diagnostic and therapeutic biomarker discovery
-
Bertucci, F. and A. Goncalves (2008). Clinical proteomics and breast cancer: strategies for diagnostic and therapeutic biomarker discovery. Future Oncology 4(2): 271-287.
-
(2008)
Future Oncology
, vol.4
, Issue.2
, pp. 271-287
-
-
Bertucci, F.1
Goncalves, A.2
-
40
-
-
32344445655
-
Comparison of software tools to improve the detection of carcinogen induced changes in the rat liver proteome by analyzing SELDI-TOF-MS spectra
-
Beyer, S., Y. Walter, J. Hellmann, P. J. Kramer, A. Kopp-Schneider, M. Kroeger (2006). Comparison of software tools to improve the detection of carcinogen induced changes in the rat liver proteome by analyzing SELDI-TOF-MS spectra. Journal of Proteome Research 5(2): 254-261.
-
(2006)
Journal of Proteome Research
, vol.5
, Issue.2
, pp. 254-261
-
-
Beyer, S.1
Walter, Y.2
Hellmann, J.3
Kramer, P.J.4
Kopp-schneider, A.5
Kroeger, M.6
-
41
-
-
0000803807
-
Asymptotic normality and the bootstrap in stratified sampling
-
Bickel, P. J. and D. A. Freedman (1984). Asymptotic normality and the bootstrap in stratified sampling. The Annals of Statistics 12(2): 470-482.
-
(1984)
The Annals of Statistics
, vol.12
, Issue.2
, pp. 470-482
-
-
Bickel, P.J.1
Freedman, D.A.2
-
42
-
-
0542388308
-
Resampling fewer than n observations: gains, losses, and remedies for losses
-
Department of Statistics, University of California, Berkeley
-
Bickel, P. J., P. Götze andW. R. van Zwet (1994). Resampling fewer than n observations: gains, losses, and remedies for losses, Technical Report 419, Department of Statistics, University of California, Berkeley.
-
(1994)
Technical Report
, vol.419
-
-
Bickel, P.J.1
Götze, P.2
Van Zwet, W.R.3
-
43
-
-
84886051697
-
ProteinChip Arrays
-
Bio-Rad Laboratories, Inc., Hercules, CA
-
Bio-Rad Laboratories (2008). ProteinChip Arrays, Bio-Rad Laboratories, Inc., Hercules, CA, http://www.bio-rad.com
-
(2008)
-
-
Laboratories, B.-R.1
-
44
-
-
0003487601
-
Neural networks for pattern recognition
-
New York: Clarendon Press
-
Bishop, C. M. (1995). Neural networks for pattern recognition. New York: Clarendon Press.
-
(1995)
-
-
Bishop, C.M.1
-
45
-
-
27644433390
-
Low-level analysis of high-density oligonucleotide array data: Background, normalization and summarization
-
University of California, Berkeley
-
Bolstad, B. M. (2004). Low-level analysis of high-density oligonucleotide array data: Background, normalization and summarization, Ph.D. thesis, University of California, Berkeley.
-
(2004)
Ph.D. thesis
-
-
Bolstad, B.M.1
-
46
-
-
84919871758
-
Pre-processing DNA microarray data
-
In: Dubitzky,W., M. Granzowand D. P. Berrar, editors. Fundamentals of data mining in genomics and proteomics. New York: Springer: pp. 51-78
-
Bolstad, B. M. (2007). Pre-processing DNA microarray data. In: Dubitzky,W., M. Granzowand D. P. Berrar, editors. Fundamentals of data mining in genomics and proteomics. New York: Springer: pp. 51-78.
-
(2007)
-
-
Bolstad, B.M.1
-
47
-
-
85016238114
-
Preprocessing and normalization for Affymetrix GeneChip expression microarrays
-
In: Stafford, P, editors. Methods in microarray normalization. Boca Raton, FL: CRC Press
-
Bolstad, B. M. (2008). Preprocessing and normalization for Affymetrix GeneChip expression microarrays. In: Stafford, P, editors. Methods in microarray normalization. Boca Raton, FL: CRC Press, pp. 41-59.
-
(2008)
, pp. 41-59
-
-
Bolstad, B.M.1
-
48
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad, B. M., R. A. Irizarry, M. Astrand and T. P. Speed (2003). A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19(2): 185-193.
-
(2003)
Bioinformatics
, vol.19
, Issue.2
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
49
-
-
0026966646
-
A training algorithm for optimal margin classifiers
-
Pittsburgh, ACM
-
Boser, B. E., I. Guyon and V. N. Vapnik (1992). A training algorithm for optimal margin classifiers. Fifth Annual Workshop on Computational Learning Theory, Pittsburgh, ACM, 144-152.
-
(1992)
Fifth Annual Workshop on Computational Learning Theory
, pp. 144-152
-
-
Boser, B.E.1
Guyon, I.2
Vapnik, V.N.3
-
51
-
-
18344396568
-
Minimum information about a microarray experiment (MIAME) - toward standards for microarray data
-
Brazma, A., P. Hingamp, J. Quackenbush, G. Sherlock, P. Spellman, C. Stoeckert (2001). Minimum information about a microarray experiment (MIAME) - toward standards for microarray data. Nature Genetics 29(4): 365-371.
-
(2001)
Nature Genetics
, vol.29
, Issue.4
, pp. 365-371
-
-
Brazma, A.1
Hingamp, P.2
Quackenbush, J.3
Sherlock, G.4
Spellman, P.5
Stoeckert, C.6
-
52
-
-
0030211964
-
Bagging predictors
-
Breiman, L. (1996a). Bagging predictors. Machine Learning 24: 123-140.
-
(1996)
Machine Learning
, vol.24
, pp. 123-140
-
-
Breiman, L.1
-
53
-
-
0030344230
-
Heuristics of instability and stabilization in model selection
-
Breiman, L. (1996b). Heuristics of instability and stabilization in model selection. The Annals of Statistics 24(6): 2350-2383.
-
(1996)
The Annals of Statistics
, vol.24
, Issue.6
, pp. 2350-2383
-
-
Breiman, L.1
-
54
-
-
0004140497
-
Out-of-bag estimation
-
Breiman, L. (1996c). Out-of-bag estimation. ftp://ftp.stat.berkeley.edu/pub/users/breiman/OOBestimation.ps.Z
-
(1996)
-
-
Breiman, L.1
-
55
-
-
0346786584
-
ARCing classifiers
-
Breiman, L. (1998). ARCing classifiers. The Annals of Statistics 26(3): 801-849.
-
(1998)
The Annals of Statistics
, vol.26
, Issue.3
, pp. 801-849
-
-
Breiman, L.1
-
56
-
-
0035478854
-
Random forests
-
Breiman, L. (2001). Random forests. Machine Learning 45(5): 5-32.
-
(2001)
Machine Learning
, vol.45
, Issue.5
, pp. 5-32
-
-
Breiman, L.1
-
59
-
-
0011996706
-
Manual-Setting up, using, and understanding random forests V4.0
-
berkeley.edu
-
Breiman, L. (2003). Manual-Setting up, using, and understanding random forests V4.0, berkeley.edu: 1-33.
-
(2003)
, pp. 1-33
-
-
Breiman, L.1
-
60
-
-
26444567985
-
Random forests: Classification/clustering
-
Breiman, L. and A. Cutler (2004). Random forests: Classification/clustering. www.math.usu.edu/~adele
-
(2004)
-
-
Breiman, L.1
Cutler, A.2
-
61
-
-
0003802343
-
Classification and regression trees
-
Belmont, California, Wadsworth International Group
-
Breiman, L., J. Friedman, R. Olshen and C. Stone (1984). Classification and regression trees. Belmont, California, Wadsworth International Group.
-
(1984)
-
-
Breiman, L.1
Friedman, J.2
Olshen, R.3
Stone, C.4
-
62
-
-
55149116287
-
Quality assessment for short oligonucleotide arrays
-
Brettschneider, J., F. Collin, B. M. Bolstad and T. P. Speed (2008). Quality assessment for short oligonucleotide arrays. Technometrics 50(3): 241-264, 279-283.
-
(2008)
Technometrics
, vol.50
, Issue.3
-
-
Brettschneider, J.1
Collin, F.2
Bolstad, B.M.3
Speed, T.P.4
-
64
-
-
1042271486
-
Discovering genomics, proteomics, and bioinformatics
-
San Francisco, CSHL Press: Pearson/Benjamin Cummings
-
Campbell, A. M. and L. J. Heyer (2007). Discovering genomics, proteomics, and bioinformatics. San Francisco, CSHL Press: Pearson/Benjamin Cummings.
-
(2007)
-
-
Campbell, A.M.1
Heyer, L.J.2
-
65
-
-
1842524515
-
Biochemistry
-
Belmont, CA: Thomson
-
Campbell, M. K. and S. O. Farrell (2006). Biochemistry. Belmont, CA: Thomson.
-
(2006)
-
-
Campbell, M.K.1
Farrell, S.O.2
-
66
-
-
3242885414
-
Pediatric acute lymphoblastic leukemia
-
Carroll, W. L., D. Bhojwani, D. J. Min, E. Raetz, M. Relling, S. Davies (2003). Pediatric acute lymphoblastic leukemia. Hematology (Am Soc Hematol Educ Program) 2003: 102-131.
-
(2003)
Hematology (Am Soc Hematol Educ Program)
, vol.2003
, pp. 102-131
-
-
Carroll, W.L.1
Bhojwani, D.2
Min, D.J.3
Raetz, E.4
Relling, M.5
Davies, S.6
-
67
-
-
85130889021
-
An ensemble method for identifying robust features for biomarker discovery
-
In: Liu, H. and H. Motoda, editors. Computational methods of feature selection. Boca Raton, FL: Taylor & Francis
-
Chan, D., S. M. Bridges and S. C. Burgess (2007). An ensemble method for identifying robust features for biomarker discovery. In: Liu, H. and H. Motoda, editors. Computational methods of feature selection. Boca Raton, FL: Taylor & Francis, pp. 377-392.
-
(2007)
, pp. 377-392
-
-
Chan, D.1
Bridges, S.M.2
Burgess, S.C.3
-
68
-
-
0242406333
-
Utility of reverse phase protein arrays: Applications to signalling pathways and human body arrays
-
Charboneau, L., H. Scott, T. Chen, M.Winters, E. F. Petricoin III, L. A. Liotta (2002). Utility of reverse phase protein arrays: Applications to signalling pathways and human body arrays. Briefings in Functional Genomics and Proteomics 1(3): 305-315.
-
(2002)
Briefings in Functional Genomics and Proteomics
, vol.1
, Issue.3
, pp. 305-315
-
-
Charboneau, L.1
Scott, H.2
Chen, T.3
Winters, M.4
Petricoin III, E.F.5
Liotta, L.A.6
-
69
-
-
50249157029
-
Bootstrap methods: a guide for practitioners and researchers
-
Hoboken, NJ: Wiley
-
Chernick, M. R. (2008). Bootstrap methods: a guide for practitioners and researchers. Hoboken, NJ: Wiley.
-
(2008)
-
-
Chernick, M.R.1
-
70
-
-
3242662388
-
Clustering microarray data
-
In: Speed, T. P., editors. Statistical analysis of gene expression microarray data. Boca Raton, FL: Chapman & Hall/CRC
-
Chipman, H., T. Hastie and R. Tibshirani (2003). Clustering microarray data. In: Speed, T. P., editors. Statistical analysis of gene expression microarray data. Boca Raton, FL: Chapman & Hall/CRC, pp. 159-200.
-
(2003)
, pp. 159-200
-
-
Chipman, H.1
Hastie, T.2
Tibshirani, R.3
-
71
-
-
33645579248
-
Hybrid hierarchical clustering with applications to microarray data
-
Chipman, H. and R. Tibshirani (2006). Hybrid hierarchical clustering with applications to microarray data. Biostatistics 7(7): 286-301.
-
(2006)
Biostatistics
, vol.7
, Issue.7
, pp. 286-301
-
-
Chipman, H.1
Tibshirani, R.2
-
72
-
-
77953140698
-
HybridHclust: Hybrid hierarchical clustering software for R
-
Chipman, H. and R. Tibshirani (2008). HybridHclust: Hybrid hierarchical clustering software for R. http://math.acadiau.ca/chipmanh/hybridHclust/index.html
-
(2008)
-
-
Chipman, H.1
Tibshirani, R.2
-
73
-
-
84886034117
-
Significance Analysis of Microarrays
-
SAM, Users guide and technical document
-
Chu, G., B. Narasimhan, R. Tibshirani and V. Tusher (2007). SAM. "Significance Analysis of Microarrays". Users guide and technical document. http://www-stat.stanford.edu/~tibs/SAM/sam.pdf
-
(2007)
-
-
Chu, G.1
Narasimhan, B.2
Tibshirani, R.3
Tusher, V.4
-
74
-
-
37648999313
-
Distinguishing protein-coding and noncoding genes in the human genome
-
Clamp, M., B. Fry, M. Kamal, X. Xie, J. Cuff, M. F. Lin (2007). Distinguishing protein-coding and noncoding genes in the human genome. Proceedings of the National Academy of Sciences 104(49): 19428-19433.
-
(2007)
Proceedings of the National Academy of Sciences
, vol.104
, Issue.49
, pp. 19428-19433
-
-
Clamp, M.1
Fry, B.2
Kamal, M.3
Xie, X.4
Cuff, J.5
Lin, M.F.6
-
75
-
-
0033565832
-
Role of accurate mass measurement ({thorn}/210 ppm) in protein identification strategies employing MS or MS/MS and database searching
-
Clauser, K. R., P. Baker and A. L. Burlingame (1999). Role of accurate mass measurement ({thorn}/210 ppm) in protein identification strategies employing MS or MS/MS and database searching. Analytical Chemistry 71(14): 2871-2882.
-
(1999)
Analytical Chemistry
, vol.71
, Issue.14
, pp. 2871-2882
-
-
Clauser, K.R.1
Baker, P.2
Burlingame, A.L.3
-
76
-
-
77953762006
-
Sparse Discriminant Analysis, DTU Informatics
-
Technical University of Denmark, Lyngby
-
Clemmensen, L., T. Hastie and B. Ersbøll (2008). Sparse Discriminant Analysis, DTU Informatics, Technical University of Denmark, Lyngby, pp. 1-25.
-
(2008)
, pp. 1-25
-
-
Clemmensen, L.1
Hastie, T.2
Ersbøll, B.3
-
77
-
-
84919841598
-
Pre-processing mass spectrometry data
-
In: Dubitzky, W., M. Granzow and D. P. Berrar, editors. Fundamentals of data mining in genomics and proteomics. New York: Springer
-
Coombes, K. R., K. A. Baggerly and J. S. Morris (2007). Pre-processing mass spectrometry data. In: Dubitzky, W., M. Granzow and D. P. Berrar, editors. Fundamentals of data mining in genomics and proteomics. New York: Springer, pp. 79-102.
-
(2007)
, pp. 79-102
-
-
Coombes, K.R.1
Baggerly, K.A.2
Morris, J.S.3
-
78
-
-
0141615786
-
Quality control and peak finding for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization
-
Coombes, K. R., H. A. Fritsche, C. Clarke, J.-N. Chen, K. A. Baggerly, J. S. Morris (2003). Quality control and peak finding for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization. Clinical Chemistry 49(10): 1615-1623.
-
(2003)
Clinical Chemistry
, vol.49
, Issue.10
, pp. 1615-1623
-
-
Coombes, K.R.1
Fritsche, H.A.2
Clarke, C.3
Chen, J.-N.4
Baggerly, K.A.5
Morris, J.S.6
-
79
-
-
18744411077
-
Improved peak detection and quantification of mass spectrometry data acquired from surface-enhanced laser desorption and ionization by denoising spectra with the undecimated discrete wavelet transform
-
Coombes, K. R., S. Tsavachidis, J. S. Morris, K. A. Baggerly, M.-C. Hung and H. M. Kuerer (2005). Improved peak detection and quantification of mass spectrometry data acquired from surface-enhanced laser desorption and ionization by denoising spectra with the undecimated discrete wavelet transform. Proteomics 5(16): 4107-4117.
-
(2005)
Proteomics
, vol.5
, Issue.16
, pp. 4107-4117
-
-
Coombes, K.R.1
Tsavachidis, S.2
Morris, J.S.3
Baggerly, K.A.4
Hung, M.-C.5
Kuerer, H.M.6
-
80
-
-
1342330572
-
A benchmark for Affymetrix GeneChip expression measures
-
Cope, L. M., R. A. Irizarry, H. A. Jaffee, Z. Wu and T. P. Speed (2004). A benchmark for Affymetrix GeneChip expression measures. Bioinformatics 20(3): 323-331.
-
(2004)
Bioinformatics
, vol.20
, Issue.3
, pp. 323-331
-
-
Cope, L.M.1
Irizarry, R.A.2
Jaffee, H.A.3
Wu, Z.4
Speed, T.P.5
-
81
-
-
0346025546
-
Stimulation of non-Hodgkin's lymphoma via HVEM: an alternate and safe way to increase Fas-induced apoptosis and improve tumor immunogenicity
-
Costello, R., F. Mallet, B. Barbarat, J. Schiano De Colella, D. Sainty and R. Sweet (2003). Stimulation of non-Hodgkin's lymphoma via HVEM: an alternate and safe way to increase Fas-induced apoptosis and improve tumor immunogenicity. Leukemia 17(12): 2500-2507.
-
(2003)
Leukemia
, vol.17
, Issue.12
, pp. 2500-2507
-
-
Costello, R.1
Mallet, F.2
Barbarat, B.3
Schiano De Colella, J.4
Sainty, D.5
Sweet, R.6
-
82
-
-
0017892070
-
Testing multivariate normality
-
Cox, D. R. and N. J. H. Small (1978). Testing multivariate normality. Biometrika 65(2): 263-272.
-
(1978)
Biometrika
, vol.65
, Issue.2
, pp. 263-272
-
-
Cox, D.R.1
Small, N.J.H.2
-
84
-
-
0014937223
-
Central dogma of molecular biology
-
Crick, F. (1970). Central dogma of molecular biology. Nature 227: 561-563.
-
(1970)
Nature
, vol.227
, pp. 561-563
-
-
Crick, F.1
-
85
-
-
0003999918
-
What mad pursuit: a personal view of scientific discovery
-
New York: Basic Books
-
Crick, F. (1988). What mad pursuit: a personal view of scientific discovery. New York: Basic Books.
-
(1988)
-
-
Crick, F.1
-
86
-
-
33244480582
-
Support vector and kernel machines
-
Cristianini, N. (2001). Support vector and kernel machines. http://www.support-vector.net/icml-tutorial.pdf
-
(2001)
-
-
Cristianini, N.1
-
87
-
-
0003798635
-
An introduction to support vector machines: and other kernel-based learning methods
-
New York: Cambridge University Press
-
Cristianini, N. and J. Shawe-Taylor (2000). An introduction to support vector machines: and other kernel-based learning methods. New York: Cambridge University Press.
-
(2000)
-
-
Cristianini, N.1
Shawe-taylor, J.2
-
88
-
-
52949099571
-
Comparison of algorithms for pre-processing of SELDI-TOF mass spectrometry data
-
Cruz-Marcelo, A., R. Guerra, M. Vannucci, Y. Li, C. Lau and T.-K. Man (2008). Comparison of algorithms for pre-processing of SELDI-TOF mass spectrometry data. Bioinformatics 24(19): 2129-2136.
-
(2008)
Bioinformatics
, vol.24
, Issue.19
, pp. 2129-2136
-
-
Cruz-marcelo, A.1
Guerra, R.2
Vannucci, M.3
Li, Y.4
Lau, C.5
Man, T.-K.6
-
89
-
-
38949128416
-
Evaluating peptide mass fingerprinting-based protein identification
-
Damodaran, S., T. D. Wood, P. Nagarajan and R. A. Rabin (2007). Evaluating peptide mass fingerprinting-based protein identification. Genomics, Proteomics & Bioinformatics 5(3-4): 152-157.
-
(2007)
Genomics, Proteomics & Bioinformatics
, vol.5
, Issue.3-4
, pp. 152-157
-
-
Damodaran, S.1
Wood, T.D.2
Nagarajan, P.3
Rabin, R.A.4
-
90
-
-
0032750293
-
De novo peptide sequencing via tandem mass spectrometry
-
Dancík, V., T. A. Addona, K. R. Clauser, J. E. Vath and P. A. Pevzner (1999). De novo peptide sequencing via tandem mass spectrometry. Journal of Computational Biology 6(3-4): 327-342.
-
(1999)
Journal of Computational Biology
, vol.6
, Issue.3-4
, pp. 327-342
-
-
Dancík, V.1
Addona, T.A.2
Clauser, K.R.3
Vath, J.E.4
Pevzner, P.A.5
-
92
-
-
58749097408
-
A subtype of childhood acute lymphoblastic leukaemia with poor treatment outcome: a genome-wide classification study
-
Den Boer, M. L., M. van Slegtenhorst, R. X. De Menezes, M. H. Cheok, J. G. Buijs-Gladdines, S. T. Peters (2009). A subtype of childhood acute lymphoblastic leukaemia with poor treatment outcome: a genome-wide classification study. Lancet Oncology 10(2): 125-134.
-
(2009)
Lancet Oncology
, vol.10
, Issue.2
, pp. 125-134
-
-
Den Boer, L.M.1
Van Slegtenhorst, M.2
De Menezes, R.X.3
Cheok, M.H.4
Buijs-gladdines, J.G.5
Peters, S.T.6
-
93
-
-
84886038444
-
Capturing protein using antibody arrays
-
DePalma, A. (2003). Capturing protein using antibody arrays. Genomics and Proteomics 3(3): 40-43.
-
(2003)
Genomics and Proteomics
, vol.3
, Issue.3
, pp. 40-43
-
-
DePalma, A.1
-
94
-
-
30644464444
-
Gene selection and classification of microarray data using random forest
-
Diaz-Uriarte, R. and S. Alvarez de Andres (2006). Gene selection and classification of microarray data using random forest. BMC Bioinformatics 7: 3.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 3
-
-
Diaz-uriarte, R.1
Alvarez De Andres, S.2
-
95
-
-
84889461268
-
Protein separation by two-dimensional electrophoresis
-
In: Van Eyk, J. E. and M. J. Dunn, editors. Clinical proteomics: From diagnosis to therapy. Weinheim: Wiley-VCH
-
Donoghue, P. M., M. Stastna and M. J. Dunn (2008). Protein separation by two-dimensional electrophoresis. In: Van Eyk, J. E. and M. J. Dunn, editors. Clinical proteomics: From diagnosis to therapy. Weinheim: Wiley-VCH, pp. 13-29.
-
(2008)
, pp. 13-29
-
-
Donoghue, P.M.1
Stastna, M.2
Dunn, M.J.3
-
96
-
-
41849108821
-
Mechanisms of transcriptional regulation by MLL and its disruption in acute leukemia
-
Dou, Y. and J. L. Hess (2008). Mechanisms of transcriptional regulation by MLL and its disruption in acute leukemia. International Journal of Hematology 87(1): 10-18.
-
(2008)
International Journal of Hematology
, vol.87
, Issue.1
, pp. 10-18
-
-
Dou, Y.1
Hess, J.L.2
-
97
-
-
3142707096
-
Data analysis tools for DNA microarrays
-
Boca Raton, FL: Chapman & Hall/CRC
-
Drǎghici, S. (2003). Data analysis tools for DNA microarrays. Boca Raton, FL: Chapman & Hall/CRC.
-
(2003)
-
-
Drǎghici, S.1
-
98
-
-
84892314756
-
Neural networks: methodology and applications
-
New York: Springer
-
Dreyfus, G. (2005). Neural networks: methodology and applications. New York: Springer.
-
(2005)
-
-
Dreyfus, G.1
-
99
-
-
26644466101
-
Multiple SVM-RFE for gene selection in cancer classification with expression data
-
Duan, K., J. Rajapakse, H. Wang and F. Azuaje (2005). Multiple SVM-RFE for gene selection in cancer classification with expression data. IEEE Transactions on Nanobioscience 4(3): 228-234.
-
(2005)
IEEE Transactions on Nanobioscience
, vol.4
, Issue.3
, pp. 228-234
-
-
Duan, K.1
Rajapakse, J.2
Wang, H.3
Azuaje, F.4
-
100
-
-
84919842571
-
Fundamentals of data mining in genomics and proteomics
-
New York: Springer
-
Dubitzky, W., M. Granzow and D. P. Berrar (2007). Fundamentals of data mining in genomics and proteomics. New York: Springer.
-
(2007)
-
-
Dubitzky, W.1
Granzow, M.2
Berrar, D.P.3
-
101
-
-
0015285440
-
Use of the Hough Transformation to detect lines and curves in pictures
-
Duda, R. O. and P. E. Hart (1972). Use of the Hough Transformation to detect lines and curves in pictures. Communications of the ACM 15(1): 11-15.
-
(1972)
Communications of the ACM
, vol.15
, Issue.1
, pp. 11-15
-
-
Duda, R.O.1
Hart, P.E.2
-
102
-
-
0003922190
-
Pattern classification
-
New York: Wiley
-
Duda, R. O., P. E. Hart and D. G. Stork (2001). Pattern classification. New York: Wiley.
-
(2001)
-
-
Duda, R.O.1
Hart, P.E.2
Stork, D.G.3
-
103
-
-
44149108232
-
Multiple testing procedures with applications to genomics
-
New York: Springer
-
Dudoit, S. and M. J. van der Laan (2008). Multiple testing procedures with applications to genomics. New York: Springer.
-
(2008)
-
-
Dudoit, S.1
Van Der Laan, M.J.2
-
104
-
-
0036376993
-
Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
-
Dudoit, S., Y. H. Yang, M. J. Callow and T. P. Speed (2002). Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments. Statistica Sinica 12: 111-139.
-
(2002)
Statistica Sinica
, vol.12
, pp. 111-139
-
-
Dudoit, S.1
Yang, Y.H.2
Callow, M.J.3
Speed, T.P.4
-
105
-
-
0012572299
-
A variance-stabilizing transformation for gene-expression microarray data
-
Durbin, B. P., J. S. Hardin, D. M. Hawkins and D. M. Rocke (2002). A variance-stabilizing transformation for gene-expression microarray data. Bioinformatics 18(Supplement 1): S105-S110.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Durbin, B.P.1
Hardin, J.S.2
Hawkins, D.M.3
Rocke, D.M.4
-
106
-
-
84907110331
-
Specialized PC software package for creation of computer systems supporting partial diagnostics based on numerical results of medical examinations
-
Dziuda, D. (1990). Specialized PC software package for creation of computer systems supporting partial diagnostics based on numerical results of medical examinations. Medical Informatics (London) 15(4): 319-326.
-
(1990)
Medical Informatics (London)
, vol.15
, Issue.4
, pp. 319-326
-
-
Dziuda, D.1
-
107
-
-
84885972500
-
Multivariate biomarkers and the Informative Set of Genes
-
5th Conference of International Drug Discovery Science and Technology, Shanghai, China
-
Dziuda, D. (2007). Multivariate biomarkers and the Informative Set of Genes. 5th Conference of International Drug Discovery Science and Technology, Shanghai, China.
-
(2007)
-
-
Dziuda, D.1
-
108
-
-
84886062037
-
Informative Set of Genes: The missing link between diagnostic biomarkers and biological processes underlying differentiation
-
Biomarker World Congress 2008, Philadelphia, PA
-
Dziuda, D. (2008). Informative Set of Genes: The missing link between diagnostic biomarkers and biological processes underlying differentiation, Biomarker World Congress 2008, Philadelphia, PA.
-
(2008)
-
-
Dziuda, D.1
-
109
-
-
84885994796
-
Advanced informatics in biomedicine - individualized biomedicine
-
Virginia Bioinformatics Institute
-
Dziuda, D. and M. J. Czar (2006). Advanced informatics in biomedicine - individualized biomedicine, Technical Report, Virginia Bioinformatics Institute.
-
(2006)
Technical Report
-
-
Dziuda, D.1
Czar, M.J.2
-
110
-
-
84886017976
-
Multivariate method for identification of the informative set of genes
-
Proceedings of the 6th Annual Hawaii International Conference on Statistics, Mathematics and Related Fields, Honolulu, Hawaii, 283-290
-
Dziuda, D. and Y. Zhou (2007). Multivariate method for identification of the informative set of genes. Proceedings of the 6th Annual Hawaii International Conference on Statistics, Mathematics and Related Fields, Honolulu, Hawaii, 283-290.
-
(2007)
-
-
Dziuda, D.1
Zhou, Y.2
-
111
-
-
0002344794
-
Bootstrap methods: another look at the jackknife
-
Efron, B. (1979). Bootstrap methods: another look at the jackknife. The Annals of Statistics 7(1): 1-26.
-
(1979)
The Annals of Statistics
, vol.7
, Issue.1
, pp. 1-26
-
-
Efron, B.1
-
112
-
-
84950461478
-
Estimating the error rate of a prediction rule: improvement on cross-validation
-
Efron, B. (1983). Estimating the error rate of a prediction rule: improvement on cross-validation. Journal of the American Statistical Association 78(382): 316-331.
-
(1983)
Journal of the American Statistical Association
, vol.78
, Issue.382
, pp. 316-331
-
-
Efron, B.1
-
113
-
-
0003991665
-
An introduction to the bootstrap
-
New York: Chapman & Hall
-
Efron, B. and R. Tibshirani (1993). An introduction to the bootstrap. New York: Chapman & Hall.
-
(1993)
-
-
Efron, B.1
Tibshirani, R.2
-
114
-
-
17644384109
-
The effect of noisy bootstrapping on the robustness of supervised classification of gene expression data
-
IEEE International Workshop on Machine Learning for Signal Processing, Brazil, 411-420
-
Efron, N. and N. Intrator (2004). The effect of noisy bootstrapping on the robustness of supervised classification of gene expression data. IEEE International Workshop on Machine Learning for Signal Processing, Brazil, 411-420.
-
(2004)
-
-
Efron, N.1
Intrator, N.2
-
115
-
-
70449509741
-
Computational methods for mass spectrometry proteomics
-
Hoboken, NJ: Wiley
-
Eidhammer, I., K. Flikka, L. Martens and S.-O. Mikalsen (2007). Computational methods for mass spectrometry proteomics. Hoboken, NJ: Wiley.
-
(2007)
-
-
Eidhammer, I.1
Flikka, K.2
Martens, L.3
Mikalsen, S.-O.4
-
118
-
-
24044513966
-
Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations
-
Elias, J. E., W. Haas, B. K. Faherty and S. P. Gygi (2005). Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations. Nature Methods 2(9): 667-675.
-
(2005)
Nature Methods
, vol.2
, Issue.9
, pp. 667-675
-
-
Elias, J.E.1
Haas, W.2
Faherty, B.K.3
Gygi, S.P.4
-
119
-
-
33644875376
-
Microarray expression technology: from start to finish
-
Elvidge, G. (2006). Microarray expression technology: from start to finish. Pharmacogenomics 7(1): 123-134.
-
(2006)
Pharmacogenomics
, vol.7
, Issue.1
, pp. 123-134
-
-
Elvidge, G.1
-
120
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng, J. K., A. L. McCormack and J. R. Yates (1994). An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. Journal of the American Society for Mass Spectrometry 5(11): 976-989.
-
(1994)
Journal of the American Society for Mass Spectrometry
, vol.5
, Issue.11
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates, J.R.3
-
121
-
-
64049095814
-
HOXA9 is required for survival in human MLL-rearranged acute leukemias
-
Faber, J., A. V. Krivtsov, M. C. Stubbs, R. Wright, T. N. Davis, M. van den Heuvel-Eibrink (2009). HOXA9 is required for survival in human MLL-rearranged acute leukemias. Blood 113(11): 2375-2385.
-
(2009)
Blood
, vol.113
, Issue.11
, pp. 2375-2385
-
-
Faber, J.1
Krivtsov, A.V.2
Stubbs, M.C.3
Wright, R.4
Davis, T.N.5
Van Den Heuvel-eibrink, M.6
-
123
-
-
37249026175
-
Informatics development: challenges and solutions for MALDI mass spectrometry
-
Fenyo, D. and R. C. Beavis (2008). Informatics development: challenges and solutions for MALDI mass spectrometry. Mass Spectrometry Reviews 27: 1-19.
-
(2008)
Mass Spectrometry Reviews
, vol.27
, pp. 1-19
-
-
Fenyo, D.1
Beavis, R.C.2
-
124
-
-
84929743411
-
Cluster and classification techniques for the biosciences
-
New York: Cambridge University Press
-
Fielding, A. (2007). Cluster and classification techniques for the biosciences. New York: Cambridge University Press.
-
(2007)
-
-
Fielding, A.1
-
125
-
-
38549176691
-
Ensembl 2008
-
Database Issue
-
Flicek, P., B. L. Aken, K. Beal, B. Ballester, M. Caccamo, Y. Chen (2008). Ensembl 2008. Nucleic Acids Research 36(Database Issue): D707-D714.
-
(2008)
Nucleic Acids Research
, vol.36
-
-
Flicek, P.1
Aken, B.L.2
Beal, K.3
Ballester, B.4
Caccamo, M.5
Chen, Y.6
-
126
-
-
0004168339
-
Multivariate statistics: a practical approach
-
New York: Chapman & Hall
-
Flury, B. and H. Riedwyl (1988). Multivariate statistics: a practical approach. New York: Chapman & Hall.
-
(1988)
-
-
Flury, B.1
Riedwyl, H.2
-
127
-
-
0026108692
-
Lightdirected, spatially addressable parallel chemical synthesis
-
Fodor, S. P. A., J. Leighton Read, M. C. Pirrung, L. Stryer, A. T. Lu, and D. Solas (1991). Lightdirected, spatially addressable parallel chemical synthesis. Science 251(4995): 767-773.
-
(1991)
Science
, vol.251
, Issue.4995
, pp. 767-773
-
-
Fodor, S.P.A.1
Leighton Read, J.2
Pirrung, M.C.3
Stryer, L.4
Lu, A.T.5
Solas, D.6
-
128
-
-
13844319908
-
PepNovo: De Novo Peptide Sequencing via Probabilistic Network Modeling
-
Frank, A. and P. Pevzner (2005). PepNovo: De Novo Peptide Sequencing via Probabilistic Network Modeling. Analytical Chemistry 77: 964-973.
-
(2005)
Analytical Chemistry
, vol.77
, pp. 964-973
-
-
Frank, A.1
Pevzner, P.2
-
130
-
-
0026656122
-
Spot-synthesis: an easy technique for the positionally addressable, parallel chemical synthesis on a membrane support
-
Frank, R. (1992). Spot-synthesis: an easy technique for the positionally addressable, parallel chemical synthesis on a membrane support. Tetrahedron 48(42): 9217-9232.
-
(1992)
Tetrahedron
, vol.48
, Issue.42
, pp. 9217-9232
-
-
Frank, R.1
-
132
-
-
0000812966
-
Molecular Configuration in Sodium Thymonucleate
-
Franklin, R. E. and R. G. Gosling (1953). Molecular Configuration in Sodium Thymonucleate. Nature 171(4356): 740-741.
-
(1953)
Nature
, vol.171
, Issue.4356
, pp. 740-741
-
-
Franklin, R.E.1
Gosling, R.G.2
-
133
-
-
0031211090
-
A decision-theoretic generalization of on-line learning and an application to boosting
-
Freund, Y. and R. E. Shapire (1997). A decision-theoretic generalization of on-line learning and an application to boosting. Journal of Computer and System Sciences 55(1): 119-139.
-
(1997)
Journal of Computer and System Sciences
, vol.55
, Issue.1
, pp. 119-139
-
-
Freund, Y.1
Shapire, R.E.2
-
135
-
-
78149334746
-
Encyclopedic reference of genomics and proteomics in molecular medicine
-
New York: Springer
-
Ganten, D. and K. Ruckpaul (2006). Encyclopedic reference of genomics and proteomics in molecular medicine. New York: Springer.
-
(2006)
-
-
Ganten, D.1
Ruckpaul, K.2
-
136
-
-
4043081164
-
High density peptide microarrays
-
Gao, X., J. P. Pellois, Y. Na, Y. Kim, E. Gulari and X. Zhou (2004). High density peptide microarrays. In situ synthesis and applications. Molecular Diversity 8(3): 177-187.
-
(2004)
In situ synthesis and applications. Molecular Diversity
, vol.8
, Issue.3
, pp. 177-187
-
-
Gao, X.1
Pellois, J.P.2
Na, Y.3
Kim, Y.4
Gulari, E.5
Zhou, X.6
-
137
-
-
0004122931
-
Biochemistry
-
Belmont, CA: Thomson Brooks/Cole
-
Garrett, R. and C. M. Grisham (2007). Biochemistry. Belmont, CA: Thomson Brooks/Cole.
-
(2007)
-
-
Garrett, R.1
Grisham, C.M.2
-
138
-
-
27144505097
-
Protein Identification and Analysis Tools on the ExPASy Server
-
In: Walker, J. M., editor. The Proteomics Protocols Handbook. New York: Humana Press
-
Gasteiger, E., C. Hoogland, A. Gattiker, S. Duvaud, M. R.Wilkins, R. D. Appel (2005). Protein Identification and Analysis Tools on the ExPASy Server. In: Walker, J. M., editor. The Proteomics Protocols Handbook. New York: Humana Press, pp. 571-607.
-
(2005)
, pp. 571-607
-
-
Gasteiger, E.1
Hoogland, C.2
Gattiker, A.3
Duvaud, S.4
Wilkins, M.R.5
Appel, R.D.6
-
139
-
-
0034651008
-
Protein arrays immobilizing entire proteins are used for functional assays and detection of protein enzymatic activities
-
Ge, H. (2000). Protein arrays immobilizing entire proteins are used for functional assays and detection of protein enzymatic activities. Nucleic Acids Research 28(2): e3.
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.2
-
-
Ge, H.1
-
140
-
-
0041530047
-
Resampling-based multiple testing for microarray data analysis
-
Department of Statistics, University of California, Berkeley
-
Ge, Y., S. Dudoit and T. P. Speed (2003). Resampling-based multiple testing for microarray data analysis, Technical report 633, Department of Statistics, University of California, Berkeley.
-
(2003)
Technical report
, vol.633
-
-
Ge, Y.1
Dudoit, S.2
Speed, T.P.3
-
141
-
-
66849124925
-
Mutations of polycomb-associated gene ASXL1 in myelodysplastic syndromes and chronic myelomonocytic leukaemia
-
Gelsi-Boyer, V., V. Trouplin, J. Adélaïde, J. Bonansea, N. Cervera, N. Carbuccia (2009). Mutations of polycomb-associated gene ASXL1 in myelodysplastic syndromes and chronic myelomonocytic leukaemia. British Journal of Haematology 145(6): 788-800.
-
(2009)
British Journal of Haematology
, vol.145
, Issue.6
, pp. 788-800
-
-
Gelsi-boyer, V.1
Trouplin, V.2
Adélaïde, J.3
Bonansea, J.4
Cervera, N.5
Carbuccia, N.6
-
142
-
-
34250330777
-
What is a gene, post-ENCODE? History and updated definition
-
Gerstein, M. B., C. Bruce, J. S. Rozowsky, D. Zheng, J. Du, J. O. Korbel (2007). What is a gene, post-ENCODE? History and updated definition. Genome Research 17(6): 669-681.
-
(2007)
Genome Research
, vol.17
, Issue.6
, pp. 669-681
-
-
Gerstein, M.B.1
Bruce, C.2
Rozowsky, J.S.3
Zheng, D.4
Du, J.5
Korbel, J.O.6
-
143
-
-
0003483993
-
A primer of genome science
-
Sunderland, MA: Sinauer Associates
-
Gibson, G. and S. V. Muse (2009). A primer of genome science. Sunderland, MA: Sinauer Associates.
-
(2009)
-
-
Gibson, G.1
Muse, S.V.2
-
144
-
-
34250308428
-
Origin of phenotypes: Genes and transcripts
-
Gingeras, T. R. (2007). Origin of phenotypes: Genes and transcripts. Genome Research 17(6): 682-690.
-
(2007)
Genome Research
, vol.17
, Issue.6
, pp. 682-690
-
-
Gingeras, T.R.1
-
145
-
-
33947584036
-
Protein microarray market scope broadens: Focused protein profiling strategies and reverse-phase arrays drive growth
-
Glaser, V. (2007). Protein microarray market scope broadens: Focused protein profiling strategies and reverse-phase arrays drive growth. Genetic Engineering & Biotechnology News 27(6).
-
(2007)
Genetic Engineering & Biotechnology News
, vol.27
, Issue.6
-
-
Glaser, V.1
-
146
-
-
78149334746
-
Mass spectrometry: MALDI
-
In: Ganten, D. and K. Ruckpaul, editors. Encyclopedic reference of genomics and proteomics in molecular medicine, Volume 2, New York: Springer
-
Gobom, J. (2006). Mass spectrometry: MALDI. In: Ganten, D. and K. Ruckpaul, editors. Encyclopedic reference of genomics and proteomics in molecular medicine, Volume 2, New York: Springer, pp. 1023-1027.
-
(2006)
, pp. 1023-1027
-
-
Gobom, J.1
-
147
-
-
64549144262
-
Candidate gene analysis using imputed genotypes: cell cycle single-nucleotide polymorphisms and ovarian cancer risk
-
Goode, E. L., B. L. Fridley, R. A. Vierkant, J. M. Cunningham, C. M. Phelan, S. Anderson (2009). Candidate gene analysis using imputed genotypes: cell cycle single-nucleotide polymorphisms and ovarian cancer risk. Cancer Epidemiology Biomarkers and Prevention 18(3): 935-944.
-
(2009)
Cancer Epidemiology Biomarkers and Prevention
, vol.18
, Issue.3
, pp. 935-944
-
-
Goode, E.L.1
Fridley, B.L.2
Vierkant, R.A.3
Cunningham, J.M.4
Phelan, C.M.5
Anderson, S.6
-
148
-
-
0002941457
-
Median estimation in sample surveys
-
Proceedings of the Survey Research Methods Section, American Statistical Association, 181-184
-
Gross, S. T. (1980). Median estimation in sample surveys. Proceedings of the Survey Research Methods Section, American Statistical Association, 181-184.
-
(1980)
-
-
Gross, S.T.1
-
149
-
-
33645241277
-
Arraybased proteomics: mapping of protein circuitries for diagnostics, prognostics, and therapy guidance in cancer
-
Gulmann, C., K. M. Sheehan, E. W. Kay, L. A. Liotta and E. F. Petricoin, III (2006). Arraybased proteomics: mapping of protein circuitries for diagnostics, prognostics, and therapy guidance in cancer. Journal of Pathology 208(5): 595-606.
-
(2006)
Journal of Pathology
, vol.208
, Issue.5
, pp. 595-606
-
-
Gulmann, C.1
Sheehan, K.M.2
Kay, E.W.3
Liotta, L.A.4
Petricoin III, E.F.5
-
150
-
-
2442674039
-
Decoding randomly ordered DNA arrays
-
Gunderson, K. L., S. Kruglyak, M. S. Graige, F. Garcia, B. G. Kermani, C. Zhao (2004). Decoding randomly ordered DNA arrays. Genome Research 14(5): 870-877.
-
(2004)
Genome Research
, vol.14
, Issue.5
, pp. 870-877
-
-
Gunderson, K.L.1
Kruglyak, S.2
Graige, M.S.3
Garcia, F.4
Kermani, B.G.5
Zhao, C.6
-
151
-
-
33745561205
-
An introduction to variable and feature selection
-
Guyon, I. and A. Elisseeff (2003). An introduction to variable and feature selection. Journal of Machine Learning Research 3(7/8): 1157-1182.
-
(2003)
Journal of Machine Learning Research
, vol.3
, Issue.7-8
, pp. 1157-1182
-
-
Guyon, I.1
Elisseeff, A.2
-
152
-
-
33745891586
-
Feature extraction: foundations and applications
-
New York: Springer-Verlag
-
Guyon, I., S. Gunn, M. Nikravesh and L. A. Zadeh (2006). Feature extraction: foundations and applications. New York: Springer-Verlag.
-
(2006)
-
-
Guyon, I.1
Gunn, S.2
Nikravesh, M.3
Zadeh, L.A.4
-
153
-
-
0036161259
-
Gene selection for cancer classification using support vector machines
-
Guyon, I., J. Weston, S. Barnhill and V. N. Vapnik (2002). Gene selection for cancer classification using support vector machines. Machine Learning 46(1-3): 389-422.
-
(2002)
Machine Learning
, vol.46
, Issue.1-3
, pp. 389-422
-
-
Guyon, I.1
Weston, J.2
Barnhill, S.3
Vapnik, V.N.4
-
154
-
-
0004060921
-
Correlation-based feature selection for machine learning
-
Department of Computer Science, The University of Waikato
-
Hall, M. A. (1999). Correlation-based feature selection for machine learning, Ph.D. thesis, Department of Computer Science, The University of Waikato.
-
(1999)
Ph.D. thesis
-
-
Hall, M.A.1
-
155
-
-
51849119676
-
Feature selection for machine learning: Comparing a correlation-based filter approach to the wrapper
-
Florida Artificial Intelligence Symposium. AAAI Press: 235-239
-
Hall, M. A. and L. A. Smith (1999). Feature selection for machine learning: Comparing a correlation-based filter approach to the wrapper. Florida Artificial Intelligence Symposium. AAAI Press: 235-239.
-
(1999)
-
-
Hall, M.A.1
Smith, L.A.2
-
156
-
-
0003972176
-
The bootstrap and Edgeworth expansion
-
New York: Springer-Verlag
-
Hall, P. (1992). The bootstrap and Edgeworth expansion. New York: Springer-Verlag.
-
(1992)
-
-
Hall, P.1
-
157
-
-
17244366071
-
Proteomics today: protein assessment and biomarkers using mass spectrometry, 2D electrophoresis, and microarray technology
-
Hoboken, NJ: Wiley
-
Hamdan, M. and P. G. Righetti (2005). Proteomics today: protein assessment and biomarkers using mass spectrometry, 2D electrophoresis, and microarray technology. Hoboken, NJ: Wiley.
-
(2005)
-
-
Hamdan, M.1
Righetti, P.G.2
-
158
-
-
85013808225
-
Data mining: concepts and techniques
-
Amsterdam: Elsevier
-
Han, J. and M. Kamber (2006). Data mining: concepts and techniques. Amsterdam: Elsevier.
-
(2006)
-
-
Han, J.1
Kamber, M.2
-
159
-
-
0003987805
-
Principles of data mining
-
Cambridge, MA: MIT Press
-
Hand, D. J., H. Mannila and P. Smyth (2001). Principles of data mining. Cambridge, MA: MIT Press.
-
(2001)
-
-
Hand, D.J.1
Mannila, H.2
Smyth, P.3
-
160
-
-
65549139174
-
Molecular pathways mediating MDS/AML with focus on AML1/RUNX1 point mutations
-
Harada, Y. and H. Harada (2009). Molecular pathways mediating MDS/AML with focus on AML1/RUNX1 point mutations. Journal of Cellular Physiology 220(1): 16-20.
-
(2009)
Journal of Cellular Physiology
, vol.220
, Issue.1
, pp. 16-20
-
-
Harada, Y.1
Harada, H.2
-
163
-
-
0034568109
-
"Gene shaving" as a method for identifying distinct sets of genes with similar expression patterns
-
Hastie, T., R. Tibshirani, M. Eisen, A. A. Alizadeh, R. Levy, L. M. Staudt (2000). "Gene shaving" as a method for identifying distinct sets of genes with similar expression patterns. Genome Biology 1(2): 1-21.
-
(2000)
Genome Biology
, vol.1
, Issue.2
, pp. 1-21
-
-
Hastie, T.1
Tibshirani, R.2
Eisen, M.3
Alizadeh, A.A.4
Levy, R.5
Staudt, L.M.6
-
164
-
-
0003684449
-
The elements of statistical learning: data mining, inference, and prediction
-
New York: Springer
-
Hastie, T., R. Tibshirani and J. H. Friedman (2001). The elements of statistical learning: data mining, inference, and prediction. New York: Springer.
-
(2001)
-
-
Hastie, T.1
Tibshirani, R.2
Friedman, J.H.3
-
165
-
-
0003684449
-
The elements of statistical learning, second edition: data mining, inference, and prediction
-
New York: Springer
-
Hastie, T., R. Tibshirani and J. H. Friedman (2009). The elements of statistical learning, second edition: data mining, inference, and prediction. New York: Springer.
-
(2009)
-
-
Hastie, T.1
Tibshirani, R.2
Friedman, J.H.3
-
166
-
-
67650246505
-
Neural networks and learning machines
-
Upper Saddle River, NJ: Prentice Hall
-
Haykin, S. S. (2008). Neural networks and learning machines. Upper Saddle River, NJ: Prentice Hall.
-
(2008)
-
-
Haykin, S.S.1
-
167
-
-
0003409088
-
The organization of behavior; a neuropsychological theory
-
New York: Wiley
-
Hebb, D. O. (1949). The organization of behavior; a neuropsychological theory. New York: Wiley.
-
(1949)
-
-
Hebb, D.O.1
-
168
-
-
0014818402
-
The nearest neighbor classification rule with a reject option
-
Hellman, M. E. (1970). The nearest neighbor classification rule with a reject option. IEEE Transactions on Systems Science and Cybernetics 6(3): 179-185.
-
(1970)
IEEE Transactions on Systems Science and Cybernetics
, vol.6
, Issue.3
, pp. 179-185
-
-
Hellman, M.E.1
-
169
-
-
0027198862
-
Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases
-
Henzel, W. J., T. M. Billeci, J. T. Stults, S. C. Wong, C. Grimley and C. Watanabe (1993). Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. Proceedings of the National Academy of Sciences of USA 90(11): 5011-5015.
-
(1993)
Proceedings of the National Academy of Sciences of USA
, vol.90
, Issue.11
, pp. 5011-5015
-
-
Henzel, W.J.1
Billeci, T.M.2
Stults, J.T.3
Wong, S.C.4
Grimley, C.5
Watanabe, C.6
-
170
-
-
33646252011
-
Processing and classification of protein mass spectra
-
Hilario, M., A. Kalousis, C. Pellegrini and M. Müller (2006). Processing and classification of protein mass spectra. Mass Spectrometry Reviews 25(3): 409-449.
-
(2006)
Mass Spectrometry Reviews
, vol.25
, Issue.3
, pp. 409-449
-
-
Hilario, M.1
Kalousis, A.2
Pellegrini, C.3
Müller, M.4
-
171
-
-
64949099179
-
BCL6 degradation caused by the interaction with the C-terminus of pro-HB-EGF induces cyclin D2 expression in gastric cancers
-
Hirata, Y., N. Ogasawara, M. Sasaki, T. Mizushima, T. Shimura, T. Mizoshita (2009). BCL6 degradation caused by the interaction with the C-terminus of pro-HB-EGF induces cyclin D2 expression in gastric cancers. British Journal of Cancer 100(8): 1320-1329.
-
(2009)
British Journal of Cancer
, vol.100
, Issue.8
, pp. 1320-1329
-
-
Hirata, Y.1
Ogasawara, N.2
Sasaki, M.3
Mizushima, T.4
Shimura, T.5
Mizoshita, T.6
-
172
-
-
0002294347
-
A simple sequentially rejective multiple test procedure
-
Holm, S. (1979). A simple sequentially rejective multiple test procedure. Scandinavian Journal of Statistics 6: 65-70.
-
(1979)
Scandinavian Journal of Statistics
, vol.6
, pp. 65-70
-
-
Holm, S.1
-
173
-
-
58149421595
-
Analysis of a complex of statistical variables into principal components
-
Hotelling, H. (1933). Analysis of a complex of statistical variables into principal components. Journal of Educational Psychology 24(67): 417-441, 498-520.
-
(1933)
Journal of Educational Psychology
, vol.24
, Issue.67
-
-
Hotelling, H.1
-
174
-
-
0002256988
-
A generalized T test and measure of multivariate dispersion
-
Proceedings of the Second Berkeley Symposium on Mathematical Statistics and Probability (July 31- August 12, 1950), Berkeley, CA: University of California Press
-
Hotelling, H. (1951). A generalized T test and measure of multivariate dispersion. Proceedings of the Second Berkeley Symposium on Mathematical Statistics and Probability (July 31- August 12, 1950), Berkeley, CA: University of California Press, pp. 23-41.
-
(1951)
, pp. 23-41
-
-
Hotelling, H.1
-
175
-
-
0003761433
-
Method and means for recognizing complex patterns
-
US Patent 3069654, 18 December 1962
-
Hough (1962). Method and means for recognizing complex patterns. US Patent 3069654, 18 December 1962.
-
(1962)
-
-
Hough1
-
176
-
-
2342422717
-
At what scale should microarray data be analyzed
-
Huang, S., A. A. Yeo, L. Gelbert, X. Lin, L. Nisenbaum and K. G. Bemis (2004). At what scale should microarray data be analyzed? American Journal of Pharmacogenomics 4(2): 129-139.
-
(2004)
American Journal of Pharmacogenomics
, vol.4
, Issue.2
, pp. 129-139
-
-
Huang, S.1
Yeo, A.A.2
Gelbert, L.3
Lin, X.4
Nisenbaum, L.5
Bemis, K.G.6
-
177
-
-
11244346557
-
Variance stabilization applied to microarray data calibration and to the quantification of differential expression
-
Huber, W., A. von Heydebreck, H. Sültmann, A. Poustka and M. Vingron (2002). Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 18(Supplement 1): S96-S104.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 1
-
-
Huber, W.1
Von Heydebreck, A.2
Sültmann, H.3
Poustka, A.4
Vingron, M.5
-
178
-
-
84949808274
-
Applied MANOVA and discriminant analysis
-
Hoboken, NJ: Wiley
-
Huberty, C. J. and S. Olejnik (2006). Applied MANOVA and discriminant analysis. Hoboken, NJ: Wiley.
-
(2006)
-
-
Huberty, C.J.1
Olejnik, S.2
-
179
-
-
84885969311
-
HGNC Guidelines, Human Genome Organisation (HUGO)
-
HUGO Gene Nomenclature Committee
-
HUGO Gene Nomenclature Committee (2008). HGNC Guidelines, Human Genome Organisation (HUGO). www.genenames.org
-
(2008)
-
-
-
180
-
-
84990629710
-
New desorption strategies for the mass spectrometric analysis of macromolecules
-
Hutchens, T. W. and T.-T. Yip (1993). New desorption strategies for the mass spectrometric analysis of macromolecules. Rapid Communications in Mass Spectrometry 7(7): 576-580.
-
(1993)
Rapid Communications in Mass Spectrometry
, vol.7
, Issue.7
, pp. 576-580
-
-
Hutchens, T.W.1
Yip, T.-T.2
-
181
-
-
84885977165
-
Product Guide 2008 - Simplifying Genetic Analysis
-
Illumina, Illumina, Inc., San Diego, CA
-
Illumina (2008a). Product Guide 2008 - Simplifying Genetic Analysis, Illumina, Inc., San Diego, CA. www.illumina.com
-
(2008)
-
-
-
182
-
-
84886028323
-
An update to the 2008 Illumina Product Guide
-
Illumina, Illumina, Inc., San Diego, CA
-
Illumina (2008b). An update to the 2008 Illumina Product Guide, Illumina, Inc., San Diego, CA. www.illumina.com
-
(2008)
-
-
-
183
-
-
38949188630
-
Pharmacogenomics biomarkers for prediction of severe adverse drug reactions
-
Ingelman-Sundberg, M. (2008). Pharmacogenomics biomarkers for prediction of severe adverse drug reactions. New England Journal of Medicine 358(6): 637-639.
-
(2008)
New England Journal of Medicine
, vol.358
, Issue.6
, pp. 637-639
-
-
Ingelman-sundberg, M.1
-
184
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
International Human Genome Sequencing Consortium
-
International Human Genome Sequencing Consortium (2001). Initial sequencing and analysis of the human genome. Nature 409(6822): 860-921.
-
(2001)
Nature
, vol.409
, Issue.6822
, pp. 860-921
-
-
-
185
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
International Human Genome Sequencing Consortium
-
International Human Genome Sequencing Consortium (2004). Finishing the euchromatic sequence of the human genome. Nature 431(7011): 931-945.
-
(2004)
Nature
, vol.431
, Issue.7011
, pp. 931-945
-
-
-
186
-
-
12344280017
-
Summaries of Affymetrix GeneChip probe level data
-
Irizarry, R. A., B. M. Bolstad, F. Collin, L. M. Cope, B. Hobbs and T. P. Speed (2003). Summaries of Affymetrix GeneChip probe level data. Nucleic Acids Research 31(4): e15.
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.4
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
Speed, T.P.6
-
187
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry, R. A., B. Hobbs, F. Collin, Y. D. Beazer-Barclay, K. J. Antonellis, U. Scherf (2003). Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4(2): 249-264.
-
(2003)
Biostatistics
, vol.4
, Issue.2
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
-
188
-
-
33645326509
-
Comparison of Affymetrix GeneChip expression measures
-
Irizarry, R. A., Z. Wu and H. A. Jaffee (2006). Comparison of Affymetrix GeneChip expression measures. Bioinformatics 22(7): 789-794.
-
(2006)
Bioinformatics
, vol.22
, Issue.7
, pp. 789-794
-
-
Irizarry, R.A.1
Wu, Z.2
Jaffee, H.A.3
-
189
-
-
23744468972
-
Expression and methylation status of the FHIT gene in acute myeloid leukemia and myelodysplastic syndrome
-
Iwai, M., H. Kiyoi, K. Ozeki, T. Kinoshita, I. N. Em, R. Ohno and T. Naoe (2005). Expression and methylation status of the FHIT gene in acute myeloid leukemia and myelodysplastic syndrome. Leukemia 19(8): 1367-1375.
-
(2005)
Leukemia
, vol.19
, Issue.8
, pp. 1367-1375
-
-
Iwai, M.1
Kiyoi, H.2
Ozeki, K.3
Kinoshita, T.4
Em, I.N.5
Ohno, R.6
Naoe, T.7
-
190
-
-
62049085839
-
Modern multivariate statistical techniques: regression, classification, and manifold learning
-
New York: Springer
-
Izenman, A. J. (2008). Modern multivariate statistical techniques: regression, classification, and manifold learning. New York: Springer.
-
(2008)
-
-
Izenman, A.J.1
-
191
-
-
0030104449
-
Artificial neural networks: A tutorial
-
Jain, A. K., J. Mao and K. M. Mohiuddin (1996). Artificial neural networks: A tutorial. Computer 29(3): 31-44.
-
(1996)
Computer
, vol.29
, Issue.3
, pp. 31-44
-
-
Jain, A.K.1
Mao, J.2
Mohiuddin, K.M.3
-
192
-
-
54049093957
-
The expression of 16 genes related to the cell of origin and immune response predicts survival in elderly patients with diffuse large B-cell lymphoma treated with CHOP and rituximab
-
Jais, J., C. Haioun, T. J. Molina, D. S. Rickman, A. de Reynies, F. Berger (2008). The expression of 16 genes related to the cell of origin and immune response predicts survival in elderly patients with diffuse large B-cell lymphoma treated with CHOP and rituximab. Leukemia 22(10): 1917-1924.
-
(2008)
Leukemia
, vol.22
, Issue.10
, pp. 1917-1924
-
-
Jais, J.1
Haioun, C.2
Molina, T.J.3
Rickman, D.S.4
De Reynies, A.5
Berger, F.6
-
193
-
-
85099325734
-
Irrelevant features and the subset selection problem
-
Machine Learning: Proceedings of the Eleventh International Conference, Morgan Kaufmann
-
John, G. H., R. Kohavi and K. Pfleger (1994). Irrelevant features and the subset selection problem. Machine Learning: Proceedings of the Eleventh International Conference, Morgan Kaufmann, pp. 121-129.
-
(1994)
, pp. 121-129
-
-
John, G.H.1
Kohavi, R.2
Pfleger, K.3
-
194
-
-
0003675176
-
Applied multivariate statistical analysis
-
Upper Saddle River, NJ: Prentice Hall
-
Johnson, R. A. and D. W. Wichern (2007). Applied multivariate statistical analysis. Upper Saddle River, NJ: Prentice Hall.
-
(2007)
-
-
Johnson, R.A.1
Wichern, D.W.2
-
195
-
-
0003946510
-
Principal component analysis
-
New York: Springer
-
Jolliffe, I. T. (2002). Principal component analysis. New York: Springer.
-
(2002)
-
-
Jolliffe, I.T.1
-
196
-
-
68949140754
-
The kernel trick
-
Department of Statistics, University of California, Berkeley
-
Jordan, M. I. (2004). The kernel trick, Department of Statistics, University of California, Berkeley. www.cs.berkeley.edu/~jordan
-
(2004)
-
-
Jordan, M.I.1
-
197
-
-
84886048301
-
Two-dimensional gel electrophoresis
-
In: Ganten, D. and K. Ruckpaul, editors. Encyclopedic reference of genomics and proteomics in molecular medicine,Volume 2, New York: Springer
-
Jungblut, P. R. (2006). Two-dimensional gel electrophoresis. In: Ganten, D. and K. Ruckpaul, editors. Encyclopedic reference of genomics and proteomics in molecular medicine,Volume 2, New York: Springer, pp. 1942-1944.
-
(2006)
, pp. 1942-1944
-
-
Jungblut, P.R.1
-
198
-
-
0003707750
-
Hyperspace: a scientific odyssey through parallel universes, time warps, and the tenth dimension
-
New York: Oxford University Press
-
Kaku, M. (1994). Hyperspace: a scientific odyssey through parallel universes, time warps, and the tenth dimension. New York: Oxford University Press.
-
(1994)
-
-
Kaku, M.1
-
199
-
-
0003430544
-
Finding groups in data: an introduction to cluster analysis
-
New York: Wiley
-
Kaufman, L. and P. J. Rousseeuw (1990). Finding groups in data: an introduction to cluster analysis. New York: Wiley.
-
(1990)
-
-
Kaufman, L.1
Rousseeuw, P.J.2
-
200
-
-
0020068152
-
Self-organized formation of topologically correct feature maps
-
Kohonen, T. (1982a). Self-organized formation of topologically correct feature maps. Biological Cybernetics 43(1): 59-69.
-
(1982)
Biological Cybernetics
, vol.43
, Issue.1
, pp. 59-69
-
-
Kohonen, T.1
-
201
-
-
0019991550
-
Analysis of a simple self-organizing process
-
Kohonen, T. (1982b). Analysis of a simple self-organizing process. Biological Cybernetics 44(2): 135-140.
-
(1982)
Biological Cybernetics
, vol.44
, Issue.2
, pp. 135-140
-
-
Kohonen, T.1
-
202
-
-
0003410791
-
Self-organizing maps
-
New York: Springer
-
Kohonen, T. (2001). Self-organizing maps. New York: Springer.
-
(2001)
-
-
Kohonen, T.1
-
203
-
-
0000012317
-
Toward optimal feature selection
-
Proceedings of the 13th International Conference on Machine Learning (ICML), Morgan Kaufmann
-
Koller, D. and M. Sahami (1996). Toward optimal feature selection. Proceedings of the 13th International Conference on Machine Learning (ICML), Morgan Kaufmann, pp. 284-292.
-
(1996)
, pp. 284-292
-
-
Koller, D.1
Sahami, M.2
-
204
-
-
84886070906
-
Protein microarrays as a tool for protein profiling and functional proteomics
-
In: Ganten, D. and K. Ruckpaul, editors. Encyclopedic reference of genomics and proteomics in molecular medicine, Volume 2, New York: Springer
-
Korf, U. (2006). Protein microarrays as a tool for protein profiling and functional proteomics. In: Ganten, D. and K. Ruckpaul, editors. Encyclopedic reference of genomics and proteomics in molecular medicine, Volume 2, New York: Springer, pp. 1521-1525.
-
(2006)
, pp. 1521-1525
-
-
Korf, U.1
-
205
-
-
4544270574
-
DNA microarray normalization methods can remove bias from differential protein expression analysis of 2D difference gel electrophoresis results
-
Kreil, D. P., N. A. Karp and K. S. Lilley (2004). DNA microarray normalization methods can remove bias from differential protein expression analysis of 2D difference gel electrophoresis results. Bioinformatics 20(13): 2026-2034.
-
(2004)
Bioinformatics
, vol.20
, Issue.13
, pp. 2026-2034
-
-
Kreil, D.P.1
Karp, N.A.2
Lilley, K.S.3
-
206
-
-
33751002650
-
Normalization and expression changes in predefined sets of proteins using 2D gel electrophoresis: A proteomic study of L-DOPA induced dyskinesia in an animal model of Parkinson's disease using DIGE
-
Kultima, K., B. Scholz, H. Alm, K. Sköld, M. Svensson, A. R. Crossman (2006). Normalization and expression changes in predefined sets of proteins using 2D gel electrophoresis: A proteomic study of L-DOPA induced dyskinesia in an animal model of Parkinson's disease using DIGE. BMC Bioinformatics 7: 475.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 475
-
-
Kultima, K.1
Scholz, B.2
Alm, H.3
Sköld, K.4
Svensson, M.5
Crossman, A.R.6
-
208
-
-
84983721794
-
Discovering knowledge in data: an introduction to data mining
-
Hoboken, NJ: Wiley
-
Larose, D. T. (2005). Discovering knowledge in data: an introduction to data mining. Hoboken, NJ: Wiley.
-
(2005)
-
-
Larose, D.T.1
-
209
-
-
84889296311
-
Data mining methods and models
-
Hoboken, NJ: Wiley
-
Larose, D. T. (2006). Data mining methods and models. Hoboken, NJ: Wiley.
-
(2006)
-
-
Larose, D.T.1
-
210
-
-
0001690797
-
A generalization of Fisher's z test
-
Correction
-
Lawley, D. N. (1938). A generalization of Fisher's z test. Biometrika 30(1/2): 180-187, Correction 467-469.
-
(1938)
Biometrika
, vol.30
, Issue.1-2
-
-
Lawley, D.N.1
-
211
-
-
0036012349
-
Plaid model for gene expression data
-
Lazzeroni, L. and A. O. Owen (2002). Plaid model for gene expression data. Statistica Sinica 12: 61-86.
-
(2002)
Statistica Sinica
, vol.12
, pp. 61-86
-
-
Lazzeroni, L.1
Owen, A.O.2
-
212
-
-
2142775432
-
Multicategory support vector machines: Theory and application to the classification of microarray data and satellite radiance data
-
Lee, Y., Y. Lin and G. Wahba (2004). Multicategory support vector machines: Theory and application to the classification of microarray data and satellite radiance data. Journal of the American Statistical Association 99(465): 67-81.
-
(2004)
Journal of the American Statistical Association
, vol.99
, Issue.465
, pp. 67-81
-
-
Lee, Y.1
Lin, Y.2
Wahba, G.3
-
213
-
-
59149104026
-
Consistent deregulation of gene expression between human and murine MLL rearrangement leukemias
-
Li, Z., R. Luo, S. Mi, M. Sun, P. Chen, J. Bao (2009). Consistent deregulation of gene expression between human and murine MLL rearrangement leukemias. Cancer Research 69(3): 1109-1116.
-
(2009)
Cancer Research
, vol.69
, Issue.3
, pp. 1109-1116
-
-
Li, Z.1
Luo, R.2
Mi, S.3
Sun, M.4
Chen, P.5
Bao, J.6
-
214
-
-
84868022340
-
The random forest package: Breiman and Cutler's random forests for classification and regression
-
Liaw, A., M. R. P.Wiener, L. Breiman and A. F. O. Cutler (2008). The random forest package: Breiman and Cutler's random forests for classification and regression. http://cran.r-project.org
-
(2008)
-
-
Liaw, A.1
Wiener, M.R.P.2
Breiman, L.3
Cutler, A.F.O.4
-
215
-
-
39149111937
-
Model-based variance-stabilizing transformation for Illumina microarray data
-
Lin, S. M., P. Du, W. Huber and W. A. Kibbe (2008). Model-based variance-stabilizing transformation for Illumina microarray data. Nucleic Acids Research 36(2): e11.
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.2
-
-
Lin, S.M.1
Du, P.2
Huber, W.3
Kibbe, W.A.4
-
216
-
-
85130883648
-
Computational methods of feature selection
-
Boca Raton, FL: Taylor & Francis
-
Liu, H. and H. Motoda (2007a). Computational methods of feature selection. Boca Raton, FL: Taylor & Francis.
-
(2007)
-
-
Liu, H.1
Motoda, H.2
-
217
-
-
85130974599
-
Less is more
-
In: Liu, H. and H. Motoda, editors. Computational methods of feature selection. Boca Raton, FL: Taylor & Francis
-
Liu, H. and H. Motoda (2007b). Less is more. In: Liu, H. and H. Motoda, editors. Computational methods of feature selection. Boca Raton, FL: Taylor & Francis, pp. 3-17.
-
(2007)
, pp. 3-17
-
-
Liu, H.1
Motoda, H.2
-
218
-
-
17044405923
-
Toward integrating feature selection algorithms for classification and clustering
-
Liu, H. and L. Yu (2005). Toward integrating feature selection algorithms for classification and clustering. IEEE Transactions on Knowledge and Data Engineering 17(4): 491-502.
-
(2005)
IEEE Transactions on Knowledge and Data Engineering
, vol.17
, Issue.4
, pp. 491-502
-
-
Liu, H.1
Yu, L.2
-
219
-
-
0003468117
-
Least squares quantization in PCM, Technical report, Bell Laboratories
-
Lloyd, S. P. (1957). Least squares quantization in PCM, Technical report, Bell Laboratories. (Portions presented at the Institute of Mathematical Statistics Meeting Atlantic City, New Jersey, September 1957. Published in 1982 in IEEE Transactions on Information Theory 28, 129-137.)
-
(1957)
-
-
Lloyd, S.P.1
-
220
-
-
25444453244
-
Screening large-scale association study data: exploiting interactions using random forests
-
Lunetta, K., L. B. Hayward, J. Segal and P. Van Eerdewegh (2004). Screening large-scale association study data: exploiting interactions using random forests. BMC Genetics 5(32).
-
(2004)
BMC Genetics
, vol.5
, Issue.32
-
-
Lunetta, K.1
Hayward, L.B.2
Segal, J.3
Van Eerdewegh, P.4
-
221
-
-
0141989734
-
PEAKS: Powerful software for peptide de novo sequencing by MS/MS
-
Ma, B., K. Zhang, C. Hendrie, C. Liang, M. Li, A. Doherty-Kirby (2003). PEAKS: Powerful software for peptide de novo sequencing by MS/MS. Rapid Communications in Mass Spectrometry 17(20): 2337-2342.
-
(2003)
Rapid Communications in Mass Spectrometry
, vol.17
, Issue.20
, pp. 2337-2342
-
-
Ma, B.1
Zhang, K.2
Hendrie, C.3
Liang, C.4
Li, M.5
Doherty-kirby, A.6
-
222
-
-
0000415463
-
Dissimilarity analysis: A new technique of hierarchical sub-division
-
MacNaughton-Smith, P., W. T. Williams, M. B. Dale and L. G. Mockett (1964). Dissimilarity analysis: A new technique of hierarchical sub-division. Nature 202: 1034-1035.
-
(1964)
Nature
, vol.202
, pp. 1034-1035
-
-
MacNaughton-smith, P.1
Williams, W.T.2
Dale, M.B.3
Mockett, L.G.4
-
223
-
-
0001457509
-
Some methods for classification and analysis of multivariate observations
-
Proceedings of the Fifth Berkeley Symposium on Mathematical Statistics and Probability (June 21-July 18, 1965 and December 27, 1965-January 7, 1966), Berkeley, CA: University of California Press, 281-297
-
MacQueen, J. (1967). Some methods for classification and analysis of multivariate observations. Proceedings of the Fifth Berkeley Symposium on Mathematical Statistics and Probability (June 21-July 18, 1965 and December 27, 1965-January 7, 1966), Berkeley, CA: University of California Press, 281-297.
-
(1967)
-
-
MacQueen, J.1
-
225
-
-
26444600335
-
Protein arrays in functional genome research
-
Maercker, C. (2005). Protein arrays in functional genome research. Bioscience Reports 25(1/2): 57-70.
-
(2005)
Bioscience Reports
, vol.25
, Issue.1-2
, pp. 57-70
-
-
Maercker, C.1
-
226
-
-
0028575316
-
Error-tolerant identification of peptides in sequence database by peptide sequence tags
-
Mann, M. and M. Wilm (1994). Error-tolerant identification of peptides in sequence database by peptide sequence tags. Analytical Chemistry 66: 4390-4399.
-
(1994)
Analytical Chemistry
, vol.66
, pp. 4390-4399
-
-
Mann, M.1
Wilm, M.2
-
227
-
-
2942611661
-
Measures of multivariate skewness and kurtosis with applications
-
Mardia, K. V. (1970). Measures of multivariate skewness and kurtosis with applications. Biometrika 57(3): 519-530.
-
(1970)
Biometrika
, vol.57
, Issue.3
, pp. 519-530
-
-
Mardia, K.V.1
-
228
-
-
34250822246
-
SELDI-TOF-MS ProteinChip array profiling of T-cell clones propagated in long-term culture identifies human profilin-I as a potential bio-marker of immunosenescence
-
Mazzatti, D. J., G. Pawelec, R. Longdin, J. R. Powell and R. J. Forsey (2007). SELDI-TOF-MS ProteinChip array profiling of T-cell clones propagated in long-term culture identifies human profilin-I as a potential bio-marker of immunosenescence. Proteome Science 5: 7.
-
(2007)
Proteome Science
, vol.5
, pp. 7
-
-
Mazzatti, D.J.1
Pawelec, G.2
Longdin, R.3
Powell, J.R.4
Forsey, R.J.5
-
229
-
-
33645143721
-
Effects of filtering by present call on analysis of microarray experiments
-
McClintick, J. N. and H. J. Edenberg (2006). Effects of filtering by present call on analysis of microarray experiments. BMC Bioinformatics 7(49).
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.49
-
-
McClintick, J.N.1
Edenberg, H.J.2
-
230
-
-
51249194645
-
A logical calculus of the ideas immanent in nervous activity
-
McCulloch, W. and W. Pitts (1943). A logical calculus of the ideas immanent in nervous activity. Bulletin of Mathematical Biophysics 5: 115-133.
-
(1943)
Bulletin of Mathematical Biophysics
, vol.5
, pp. 115-133
-
-
McCulloch, W.1
Pitts, W.2
-
231
-
-
8744245692
-
Applied multivariate research: design and interpretation
-
Los Angeles: Sage Publications
-
Meyers, L. S., G. Gamst and A. J. Guarino (2006). Applied multivariate research: design and interpretation. Los Angeles: Sage Publications.
-
(2006)
-
-
Meyers, L.S.1
Gamst, G.2
Guarino, A.J.3
-
232
-
-
84886035602
-
MicroArray and gene expression - MAGE, MGED Society
-
MGED_Society
-
MGED_Society (2008a). MicroArray and gene expression - MAGE, MGED Society. www.mged.org
-
(2008)
-
-
-
233
-
-
84886033919
-
Minimum information about a microarray experiment - MIAME 2.0, MGED Society
-
MGED_Society
-
MGED_Society (2008b). Minimum information about a microarray experiment - MIAME 2.0, MGED Society. www.mged.org
-
(2008)
-
-
-
234
-
-
84886005620
-
Central Connecticut State University, Department of Mathematical Sciences, New Britain, CT
-
Personal Communication, May 6, 2008
-
Miller, D. (2008). Central Connecticut State University, Department of Mathematical Sciences, New Britain, CT. Personal Communication, May 6, 2008.
-
(2008)
-
-
Miller, D.1
-
236
-
-
0004255908
-
Machine learning
-
New York: McGraw-Hill
-
Mitchell, T. M. (1997). Machine learning. New York: McGraw-Hill.
-
(1997)
-
-
Mitchell, T.M.1
-
237
-
-
0038617729
-
Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss
-
Modrek, B. and C. J. Lee (2003). Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss. Nature Genetics 34(2): 177-180.
-
(2003)
Nature Genetics
, vol.34
, Issue.2
, pp. 177-180
-
-
Modrek, B.1
Lee, C.J.2
-
238
-
-
67449090372
-
Methylation of multiple genes as molecular markers for diagnosis of a small, well-differentiated hepatocellular carcinoma
-
Moribe, T., N. Iizuka, T. Miura, N. Kimura, S. Tamatsukuri, H. Ishitsuka (2009). Methylation of multiple genes as molecular markers for diagnosis of a small, well-differentiated hepatocellular carcinoma. International Journal of Cancer 125(2): 388-397.
-
(2009)
International Journal of Cancer
, vol.125
, Issue.2
, pp. 388-397
-
-
Moribe, T.1
Iizuka, N.2
Miura, T.3
Kimura, N.4
Tamatsukuri, S.5
Ishitsuka, H.6
-
239
-
-
48649086267
-
Weighted instance typicality search (WITS): A nearest neighbor data reduction algorithm
-
Morring, B. D. and T. R. Martinez (2004).Weighted instance typicality search (WITS): A nearest neighbor data reduction algorithm. Intelligent Data Analysis 8(1): 61-78.
-
(2004)
Intelligent Data Analysis
, vol.8
, Issue.1
, pp. 61-78
-
-
Morring, B.D.1
Martinez, T.R.2
-
240
-
-
58149463928
-
Multivariate statistical methods
-
Belmont, CA: Thomson
-
Morrison, D. F. (2005). Multivariate statistical methods. Belmont, CA: Thomson.
-
(2005)
-
-
Morrison, D.F.1
-
241
-
-
84886002930
-
Kernels, Ecole Nationale Supérieure des Télécommunications (ENST)
-
Moulines, E. (2008). Kernels, Ecole Nationale Supérieure des Télécommunications (ENST). www.tsi.enst.fr/~moulines
-
(2008)
-
-
Moulines, E.1
-
242
-
-
67649311629
-
Characterization of a new myeloid leukemia cell line with normal cytogenetics (CG-SH)
-
Leuk Res. Available online May 2009
-
Munker, R., M. Nordberg, D. Veillon, B. J. Williams, A. Roggero, W. Kern (2009). Characterization of a new myeloid leukemia cell line with normal cytogenetics (CG-SH). Leuk Res. Available online May 2009.
-
(2009)
-
-
Munker, R.1
Nordberg, M.2
Veillon, D.3
Williams, B.J.4
Roggero, A.5
Kern, W.6
-
243
-
-
0016711037
-
High resolution two-dimensional electrophoresis of proteins
-
O'Farrell, P. H. (1975). High resolution two-dimensional electrophoresis of proteins. The Journal of Biological Chemistry 250(10): 4007-4021.
-
(1975)
The Journal of Biological Chemistry
, vol.250
, Issue.10
, pp. 4007-4021
-
-
O'Farrell, P.H.1
-
244
-
-
84919847888
-
Exploratory clustering of gene expression profiles of mutated yeast strains
-
In: Zhang,W. and I. Shmulevich, editors. Computational and statistical approaches to genomics. New York: Springer
-
Oja, M., J. Nikkila, P. Toronen, G. Wong, E. Castren and S. Kaski (2006). Exploratory clustering of gene expression profiles of mutated yeast strains. In: Zhang,W. and I. Shmulevich, editors. Computational and statistical approaches to genomics. New York: Springer, pp. 61-74.
-
(2006)
, pp. 61-74
-
-
Oja, M.1
Nikkila, J.2
Toronen, P.3
Wong, G.4
Castren, E.5
Kaski, S.6
-
245
-
-
33846624274
-
Discovering biomarkers from gene expression data for predicting cancer subgroups using neural networks and relational fuzzy clustering
-
Pal, N., K. Aguan, A. Sharma and S. Amari (2007). Discovering biomarkers from gene expression data for predicting cancer subgroups using neural networks and relational fuzzy clustering. BMC Bioinformatics 8: 5.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 5
-
-
Pal, N.1
Aguan, K.2
Sharma, A.3
Amari, S.4
-
246
-
-
23444438913
-
A comparability study of the emerging protein array platforms with established ELISA procedures
-
Pang, S., J. Smith, D. Onley, J. Reeve, M. Walker and C. Foy (2005). A comparability study of the emerging protein array platforms with established ELISA procedures. Journal of Immunological Methods 302(1-2): 1-12.
-
(2005)
Journal of Immunological Methods
, vol.302
, Issue.1-2
, pp. 1-12
-
-
Pang, S.1
Smith, J.2
Onley, D.3
Reeve, J.4
Walker, M.5
Foy, C.6
-
247
-
-
12944269065
-
Rapid identification of proteins by peptidemass fingerprinting
-
Pappin, D. J., P. Hojrup and A. J. Bleasby (1993). Rapid identification of proteins by peptidemass fingerprinting. Current Biology 3(6): 327-332.
-
(1993)
Current Biology
, vol.3
, Issue.6
, pp. 327-332
-
-
Pappin, D.J.1
Hojrup, P.2
Bleasby, A.J.3
-
248
-
-
58149204055
-
ArrayExpress update-from an archive of functional genomics experiments to the atlas of gene expression
-
Database issue
-
Parkinson, H., M. Kapushesky, N. Kolesnikov, G. Rustici, M. Shojatalab, N. Abeygunawardena (2009). ArrayExpress update-from an archive of functional genomics experiments to the atlas of gene expression. Nucleic Acids Research 37 (Database issue): D868-D872.
-
(2009)
Nucleic Acids Research
, vol.37
-
-
Parkinson, H.1
Kapushesky, M.2
Kolesnikov, N.3
Rustici, G.4
Shojatalab, M.5
Abeygunawardena, N.6
-
249
-
-
33846039701
-
ArrayExpress-a public database of microarray experiments and gene expression profiles
-
Parkinson, H., M. Kapushesky, M. Shojatalab, N. Abeygunawardena, R. Coulson, A. Farne (2007). ArrayExpress-a public database of microarray experiments and gene expression profiles. Nucleic Acids Research 35: D747-D750.
-
(2007)
Nucleic Acids Research
, vol.35
-
-
Parkinson, H.1
Kapushesky, M.2
Shojatalab, M.3
Abeygunawardena, N.4
Coulson, R.5
Farne, A.6
-
250
-
-
0035848705
-
Reverse phase protein microarrays which capture disease progression show activation of pro-survival pathways at the cancer invasion front
-
Paweletz, C. P., L. Charboneau, V. E. Bichsel, N. L. Simone, T. Chen, J. W. Gillespie (2001). Reverse phase protein microarrays which capture disease progression show activation of pro-survival pathways at the cancer invasion front. Oncogene 20: 1981-1989.
-
(2001)
Oncogene
, vol.20
, pp. 1981-1989
-
-
Paweletz, C.P.1
Charboneau, L.2
Bichsel, V.E.3
Simone, N.L.4
Chen, T.5
Gillespie, J.W.6
-
251
-
-
42549089637
-
Biologists initiate plan to map human proteome
-
Pearson, H. (2008). Biologists initiate plan to map human proteome. Nature 452(24): 920-921.
-
(2008)
Nature
, vol.452
, Issue.24
, pp. 920-921
-
-
Pearson, H.1
-
253
-
-
0036712071
-
Individually addressable parallel peptide synthesis on microchips
-
Pellois, J. P., X. Zhou, O. Srivannavit, T. Zhou, E. Gulari and X. Gao (2002). Individually addressable parallel peptide synthesis on microchips. Nature Biotechnology 20: 922-926.
-
(2002)
Nature Biotechnology
, vol.20
, pp. 922-926
-
-
Pellois, J.P.1
Zhou, X.2
Srivannavit, O.3
Zhou, T.4
Gulari, E.5
Gao, X.6
-
254
-
-
34250857552
-
DNA study forces rethink of what it means to be a gene
-
Pennisi, E. (2007). DNA study forces rethink of what it means to be a gene. Science 316: 1556-1557.
-
(2007)
Science
, vol.316
, pp. 1556-1557
-
-
Pennisi, E.1
-
255
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D. N., D. J. C. Pappin, D. M. Creasy and J. S. Cottrell (1999). Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20(18): 3551-3567.
-
(1999)
Electrophoresis
, vol.20
, Issue.18
, pp. 3551-3567
-
-
Perkins, D.N.1
Pappin, D.J.C.2
Creasy, D.M.3
Cottrell, J.S.4
-
256
-
-
1942418470
-
Grafting: Fast, incremental feature selection by gradient descent in function space
-
Perkins, S., K. Lacker and J. Theiler (2003). Grafting: Fast, incremental feature selection by gradient descent in function space. Journal of Machine Learning Research 3: 1333-1356.
-
(2003)
Journal of Machine Learning Research
, vol.3
, pp. 1333-1356
-
-
Perkins, S.1
Lacker, K.2
Theiler, J.3
-
257
-
-
44449176159
-
What is a gene? An updated operational definition
-
Pesole, G. (2008). What is a gene? An updated operational definition. Gene 417(1-2): 1-4.
-
(2008)
Gene
, vol.417
, Issue.1-2
, pp. 1-4
-
-
Pesole, G.1
-
258
-
-
0032944321
-
Going global
-
Jan 1999
-
Phimister, B. (1999). Going global. Nature Genetics 21(Jan 1999 Supplement): 1.
-
(1999)
Nature Genetics
, vol.21
, Issue.SUPPL.
, pp. 1
-
-
Phimister, B.1
-
259
-
-
21844512391
-
Large sample confidence regions based on subsamples under minimal assumptions
-
Politis, D. N. and J. P. Romano (1994). Large sample confidence regions based on subsamples under minimal assumptions. The Annals of Statistics 22(4): 2031-2050.
-
(1994)
The Annals of Statistics
, vol.22
, Issue.4
, pp. 2031-2050
-
-
Politis, D.N.1
Romano, J.P.2
-
260
-
-
84889498434
-
Antibody and reverse capture protein microarrays for clinical proteomics
-
In: Van Eyk, J. E. and M. J. Dunn, editors. Clinical proteomics: From diagnosis to therapy. Weinheim: Wiley-VCH
-
Pollard, H. B., O. Eidelman, M. Srivastava, C. Joswik, S. Rothwell, G. P. Mueller (2008). Antibody and reverse capture protein microarrays for clinical proteomics. In: Van Eyk, J. E. and M. J. Dunn, editors. Clinical proteomics: From diagnosis to therapy. Weinheim: Wiley-VCH, pp. 549-569.
-
(2008)
, pp. 549-569
-
-
Pollard, H.B.1
Eidelman, O.2
Srivastava, M.3
Joswik, C.4
Rothwell, S.5
Mueller, G.P.6
-
261
-
-
33846934658
-
Opportunities and limitations of SELDI-TOF-MS in biomedical research: practical advices
-
Poon, T. C. W. (2007). Opportunities and limitations of SELDI-TOF-MS in biomedical research: practical advices. Expert Review of Proteomics 4(4): 51-65.
-
(2007)
Expert Review of Proteomics
, vol.4
, Issue.4
, pp. 51-65
-
-
Poon, T.C.W.1
-
262
-
-
3543058847
-
Mining mass spectra for diagnosis and biomarker discovery of cerebral accidents
-
Prados, J., A. Kalousis, J.-C. Sanchez, L. Allard, O. Carrette and M. Hilario (2004). Mining mass spectra for diagnosis and biomarker discovery of cerebral accidents. Proteomics 4(8): 2320-2332.
-
(2004)
Proteomics
, vol.4
, Issue.8
, pp. 2320-2332
-
-
Prados, J.1
Kalousis, A.2
Sanchez, J.-C.3
Allard, L.4
Carrette, O.5
Hilario, M.6
-
263
-
-
0003474751
-
Numerical recipes: the art of scientific computing
-
New York: Cambridge University Press
-
Press, W. H., S. A. Teukolsky, W. T. Vetterling and B. P. Flannery (2007). Numerical recipes: the art of scientific computing. New York: Cambridge University Press.
-
(2007)
-
-
Press, W.H.1
Teukolsky, S.A.2
Vetterling, W.T.3
Flannery, B.P.4
-
264
-
-
33846057724
-
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
-
Database Issue
-
Pruitt, K. D., T. Tatusova and D. R. Maglott (2007). NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Research 35(Database Issue): D61-D65.
-
(2007)
Nucleic Acids Research
, vol.35
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
265
-
-
33845643077
-
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
-
Rayner, T. F., P. Rocca-Serra, P. T. Spellman, H. C. Causton, A. Farne, E. Holloway (2006). A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinformatics 7: 489.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 489
-
-
Rayner, T.F.1
Rocca-serra, P.2
Spellman, P.T.3
Causton, H.C.4
Farne, A.5
Holloway, E.6
-
266
-
-
0347362474
-
SELDI ProteinChip array technology: Protein-based predictive medicine and drug discovery applications
-
Reddy, G. and E. A. Dalmasso (2003). SELDI ProteinChip array technology: Protein-based predictive medicine and drug discovery applications. Journal of Biomedicine and Biotechnology 4: 237-241.
-
(2003)
Journal of Biomedicine and Biotechnology
, vol.4
, pp. 237-241
-
-
Reddy, G.1
Dalmasso, E.A.2
-
267
-
-
84886046461
-
Mass Spectrometry: SELDI
-
In: Ganten, D. and K. Ruckpaul, editors. Encyclopedic reference of genomics and proteomics in molecular medicine, Volume 2, New York: Springer
-
Reddy, G., R. Rubin and S.Weinberger (2006). Mass Spectrometry: SELDI. In: Ganten, D. and K. Ruckpaul, editors. Encyclopedic reference of genomics and proteomics in molecular medicine, Volume 2, New York: Springer, pp. 1034-1036.
-
(2006)
, pp. 1034-1036
-
-
Reddy, G.1
Rubin, R.2
Weinberger, S.3
-
268
-
-
41549089987
-
An easy-to-use Decoy Database Builder software tool, implementing different decoy strategies for false discovery rate calculation in automated MS/MS protein identifications
-
Reidegeld, K. A., M. Eisenacher, l. M. Koh, D. Chamrad, G. Körting, M. Blüggel (2008). An easy-to-use Decoy Database Builder software tool, implementing different decoy strategies for false discovery rate calculation in automated MS/MS protein identifications. Proteomics 8(6): 1129-1137.
-
(2008)
Proteomics
, vol.8
, Issue.6
, pp. 1129-1137
-
-
Reidegeld, K.A.1
Eisenacher, M.2
Koh, L.M.3
Chamrad, D.4
Körting, G.5
Blüggel, M.6
-
269
-
-
0004252391
-
Methods of multivariate analysis
-
New York: Wiley & Sons
-
Rencher, A. C. (2002). Methods of multivariate analysis. New York: Wiley & Sons.
-
(2002)
-
-
Rencher, A.C.1
-
270
-
-
84946576872
-
Gene, The Stanford Encyclopedia of Philosophy
-
(Fall 2008 Edition), Edward N. Zalta (ed.)
-
Rheinberger, H.-J. and S. Müller-Wille (2008). Gene, The Stanford Encyclopedia of Philosophy (Fall 2008 Edition), Edward N. Zalta (ed.). http://plato.stanford.edu
-
(2008)
-
-
Rheinberger, H.-J.1
Müller-wille, S.2
-
271
-
-
84953405534
-
Pattern recognition and neural networks
-
New York: Cambridge University Press
-
Ripley, B. D. (1996). Pattern recognition and neural networks. New York: Cambridge University Press.
-
(1996)
-
-
Ripley, B.D.1
-
272
-
-
11144273669
-
The perceptron: a probabilistic model for information storage and organization in the brain
-
Rosenblatt, F. (1958). The perceptron: a probabilistic model for information storage and organization in the brain. Psychological Review 65(6): 386-408.
-
(1958)
Psychological Review
, vol.65
, Issue.6
, pp. 386-408
-
-
Rosenblatt, F.1
-
273
-
-
0141993002
-
Classification of pediatric acute lymphoblastic leukemia by gene expression profiling
-
Ross, M. E., X. Zhou, G. Song, S. A. Shurtleff, K. Girtman, W. K. Williams (2003). Classification of pediatric acute lymphoblastic leukemia by gene expression profiling. Blood 102(8): 2951-2959.
-
(2003)
Blood
, vol.102
, Issue.8
, pp. 2951-2959
-
-
Ross, M.E.1
Zhou, X.2
Song, G.3
Shurtleff, S.A.4
Girtman, K.5
Williams, W.K.6
-
274
-
-
0037311919
-
TM4: a free, open-source system for microarray data management and analysis
-
Saeed, A. I., V. Sharov, J. White, J. Li,W. Liang, N. Bhagabati (2003). TM4: a free, open-source system for microarray data management and analysis. BioTechniques 34(2): 374-378.
-
(2003)
BioTechniques
, vol.34
, Issue.2
, pp. 374-378
-
-
Saeed, A.I.1
Sharov, V.2
White, J.3
Li, J.4
Liang, W.5
Bhagabati, N.6
-
275
-
-
35748932917
-
A review of feature selection techniques in bioinformatics
-
Saeys, Y., I. Inza and P. Larranaga (2007). A review of feature selection techniques in bioinformatics. Bioinformatics 23(19): 2507-2517.
-
(2007)
Bioinformatics
, vol.23
, Issue.19
, pp. 2507-2517
-
-
Saeys, Y.1
Inza, I.2
Larranaga, P.3
-
276
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena, M., D. Shalon, R. W. Davis and P. O. Brown (1995). Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270(5235): 467-470.
-
(1995)
Science
, vol.270
, Issue.5235
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
277
-
-
0003408420
-
Learning with kernels: support vector machines, regularization, optimization, and beyond
-
Cambridge, MA, MIT Press
-
Scheolkopf, B. and A. J. Smola (2002). Learning with kernels: support vector machines, regularization, optimization, and beyond. Cambridge, MA, MIT Press.
-
(2002)
-
-
Scheolkopf, B.1
Smola, A.J.2
-
278
-
-
0242407063
-
Microarrays to characterize protein interactions on a whole-proteome scale
-
Schweitzer, B., P. Predki and M. Snyder (2003). Microarrays to characterize protein interactions on a whole-proteome scale. Proteomics 3(11): 2190-2199.
-
(2003)
Proteomics
, vol.3
, Issue.11
, pp. 2190-2199
-
-
Schweitzer, B.1
Predki, P.2
Snyder, M.3
-
279
-
-
84889628932
-
Introduction to DNA microarrays
-
In: Emmert-Streib, F. and M. Dehmer, editors. Analysis of microarray data: a network-based approach. Weinheim: Wiley-VCH
-
Seidel, C. (2008). Introduction to DNA microarrays. In: Emmert-Streib, F. and M. Dehmer, editors. Analysis of microarray data: a network-based approach. Weinheim: Wiley-VCH, pp. 1-26.
-
(2008)
, pp. 1-26
-
-
Seidel, C.1
-
280
-
-
33748809521
-
Probe set algorithms: is there a rational best bet
-
Seo, J. and E. P. Hoffman (2006). Probe set algorithms: is there a rational best bet? BMC Bioinformatics 7(395).
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.395
-
-
Seo, J.1
Hoffman, E.P.2
-
281
-
-
52949094993
-
Proteomics ponders prime time
-
Service, R. F. (2008). Proteomics ponders prime time. Science 321: 1758-1761.
-
(2008)
Science
, vol.321
, pp. 1758-1761
-
-
Service, R.F.1
-
282
-
-
14644392676
-
Kernel methods for pattern analysis
-
New York: Cambridge University Press
-
Shawe-Taylor, J. and N. Cristianini (2004). Kernel methods for pattern analysis. New York: Cambridge University Press.
-
(2004)
-
-
Shawe-taylor, J.1
Cristianini, N.2
-
283
-
-
84947402121
-
Rectangular confidence regions for the means of multivariate normal distributions
-
Sidak, Z. (1967). Rectangular confidence regions for the means of multivariate normal distributions. Journal of the American Statistical Association 62(318): 626-633.
-
(1967)
Journal of the American Statistical Association
, vol.62
, Issue.318
, pp. 626-633
-
-
Sidak, Z.1
-
284
-
-
84886017603
-
Dictionary of DNA and genome technology
-
Malden, MA: Blackwell
-
Singleton, P. (2008). Dictionary of DNA and genome technology. Malden, MA: Blackwell.
-
(2008)
-
-
Singleton, P.1
-
286
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Smyth, G. K. (2004). Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Statistical Applications in Genetics and Molecular Biology 3(1).
-
(2004)
Statistical Applications in Genetics and Molecular Biology
, vol.3
, Issue.1
-
-
Smyth, G.K.1
-
287
-
-
0037163144
-
Design and implementation of microarray gene expression markup language (MAGE-ML)
-
research0046.1-0046.9
-
Spellman, P. T., M. Miller, J. Stewart, C. Troup, U. Sarkans, S. Chervitz (2002). Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biology 3(9): research0046.1-0046.9.
-
(2002)
Genome Biology
, vol.3
, Issue.9
-
-
Spellman, P.T.1
Miller, M.2
Stewart, J.3
Troup, C.4
Sarkans, U.5
Chervitz, S.6
-
288
-
-
44749093882
-
Protein and lysate array technologies in cancer research
-
Spurrier, B., P. Honkanen, A. Holway, K. Kumamoto, M. Terashima, S. Takenoshita (2008). Protein and lysate array technologies in cancer research. Biotechnology Advances 26: 361-369.
-
(2008)
Biotechnology Advances
, vol.26
, pp. 361-369
-
-
Spurrier, B.1
Honkanen, P.2
Holway, A.3
Kumamoto, K.4
Terashima, M.5
Takenoshita, S.6
-
289
-
-
0345205514
-
Methods of multivariate statistics
-
New York: Wiley
-
Srivastava, M. S. (2002). Methods of multivariate statistics. New York: Wiley.
-
(2002)
-
-
Srivastava, M.S.1
-
290
-
-
31444446830
-
Silencing of the tumor suppressor gene FHIT is highly characteristic for MLL gene rearranged infant acute lymphoblastic leukemia
-
Stam, R., M. den Boer, M. Passier, G. E. Janka-Schaub, S. E. Sallan, S. A. Armstrong (2006). Silencing of the tumor suppressor gene FHIT is highly characteristic for MLL gene rearranged infant acute lymphoblastic leukemia. Leukemia 20(2): 264-271.
-
(2006)
Leukemia
, vol.20
, Issue.2
, pp. 264-271
-
-
Stam, R.1
Den Boer, M.2
Passier, M.3
Janka-schaub, G.E.4
Sallan, S.E.5
Armstrong, S.A.6
-
291
-
-
84885978064
-
Alternative Splicing
-
In: Ganten, D. and K. Ruckpaul, editors. Encyclopedic reference of genomics and proteomics in molecular medicine. New York: Springer
-
Stamm, S. (2006). Alternative Splicing. In: Ganten, D. and K. Ruckpaul, editors. Encyclopedic reference of genomics and proteomics in molecular medicine. New York: Springer, pp. 45-48.
-
(2006)
, pp. 45-48
-
-
Stamm, S.1
-
292
-
-
16544392954
-
End of the beginning
-
Stein, L. D. (2004). End of the beginning. Nature 431(7011): 915-916.
-
(2004)
Nature
, vol.431
, Issue.7011
, pp. 915-916
-
-
Stein, L.D.1
-
294
-
-
0003976359
-
Using multivariate statistics
-
Boston: Pearson
-
Tabachnick, B. G. and L. S. Fidell (2007). Using multivariate statistics. Boston: Pearson.
-
(2007)
-
-
Tabachnick, B.G.1
Fidell, L.S.2
-
295
-
-
0345600791
-
GutenTag: High-throughput sequence tagging via an empirically derived fragmentation model
-
Tabb, D. L., A. Saraf and J. R. Yates (2003). GutenTag: High-throughput sequence tagging via an empirically derived fragmentation model. Analytical Chemistry 75: 6415-6421.
-
(2003)
Analytical Chemistry
, vol.75
, pp. 6415-6421
-
-
Tabb, D.L.1
Saraf, A.2
Yates, J.R.3
-
296
-
-
0033027794
-
Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation
-
Tamayo, P., D. Slonim, J. Mesirov, Q. Zhu, S. Kitareewan, E. Dmitrovsky (1999). Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation. Proceedings of the National Academy of Science USA 96: 2907-2912.
-
(1999)
Proceedings of the National Academy of Science USA
, vol.96
, pp. 2907-2912
-
-
Tamayo, P.1
Slonim, D.2
Mesirov, J.3
Zhu, Q.4
Kitareewan, S.5
Dmitrovsky, E.6
-
297
-
-
33644700414
-
Fabrication of an antibody microwell array with self-adhering antibody binding protein
-
Tanaka, G., H. Funabashi, M. Mie and E. Kobatake (2006). Fabrication of an antibody microwell array with self-adhering antibody binding protein. Analytical Biochemistry 350(2): 298-303.
-
(2006)
Analytical Biochemistry
, vol.350
, Issue.2
, pp. 298-303
-
-
Tanaka, G.1
Funabashi, H.2
Mie, M.3
Kobatake, E.4
-
298
-
-
27544511899
-
InsPecT: Identification of posttranslationally modified peptides from tandem mass spectra
-
Tanner, S., H. Shu, A. Frank, L.-C.Wang, E. Zandi, M. Mumby (2005). InsPecT: Identification of posttranslationally modified peptides from tandem mass spectra. Analytical Chemistry 77: 4626-4639.
-
(2005)
Analytical Chemistry
, vol.77
, pp. 4626-4639
-
-
Tanner, S.1
Shu, H.2
Frank, A.3
Wang, L.-C.4
Zandi, E.5
Mumby, M.6
-
299
-
-
0035356977
-
Implementation and uses of automated de novo peptide sequencing by tandem mass spectrometry
-
Taylor, J. A. and R. S. Johnson (2001). Implementation and uses of automated de novo peptide sequencing by tandem mass spectrometry. Analytical Chemistry 73(11): 2594-2604.
-
(2001)
Analytical Chemistry
, vol.73
, Issue.11
, pp. 2594-2604
-
-
Taylor, J.A.1
Johnson, R.S.2
-
300
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
The ENCODE Project Consortium
-
The ENCODE Project Consortium (2007). Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447(7146): 799-816.
-
(2007)
Nature
, vol.447
, Issue.7146
, pp. 799-816
-
-
-
301
-
-
38549097071
-
The Universal Protein Resource (UniProt)
-
The UniProt Consortium
-
The UniProt Consortium (2008). The Universal Protein Resource (UniProt). Nucleid Acid Research 36: D190-D195.
-
(2008)
Nucleid Acid Research
, vol.36
-
-
-
302
-
-
85013694715
-
Pattern recognition
-
Boston: Academic Press
-
Theodoridis, S. and K. Koutroumbas (2006). Pattern recognition. Boston: Academic Press.
-
(2006)
-
-
Theodoridis, S.1
Koutroumbas, K.2
-
303
-
-
51849135992
-
What does PLIER really do
-
Therneau, T. M. and K. V. Ballman (2008). What does PLIER really do? Cancer Informatics 2008(6): 423-431.
-
(2008)
Cancer Informatics
, vol.2008
, Issue.6
, pp. 423-431
-
-
Therneau, T.M.1
Ballman, K.V.2
-
304
-
-
84885967106
-
Clustering methods for the analysis of DNA microarray data, Technical report, Department of Health Research and Policy, and Statistics, Stanford University, Stanford, CA
-
Tibshirani, R., T. Hastie, M. Eisen, D. Ross, D. Botstein and P. Brown (1999). Clustering methods for the analysis of DNA microarray data, Technical report, Department of Health Research and Policy, and Statistics, Stanford University, Stanford, CA. http://www-stat.stanford.edu/~tibs/
-
(1999)
-
-
Tibshirani, R.1
Hastie, T.2
Eisen, M.3
Ross, D.4
Botstein, D.5
Brown, P.6
-
305
-
-
0037076272
-
Diagnosis of multiple cancer types by shrunken centroids of gene expression
-
Tibshirani, R., T. Hastie, B. Narasimhan and G. Chu (2002). Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proceedings of the National Academy of Science 99(10): 6567-6572.
-
(2002)
Proceedings of the National Academy of Science
, vol.99
, Issue.10
, pp. 6567-6572
-
-
Tibshirani, R.1
Hastie, T.2
Narasimhan, B.3
Chu, G.4
-
306
-
-
0001860949
-
Technical Note: Bias and the quantification of stability
-
Turney, P. (1995). Technical Note: Bias and the quantification of stability. Machine Learning 20(1-2): 23-33.
-
(1995)
Machine Learning
, vol.20
, Issue.1-2
, pp. 23-33
-
-
Turney, P.1
-
307
-
-
0035942271
-
Significance analysis of microarrays applied to transcriptional responses to ionizing radiation
-
Tusher, V., R. Tibshirani and G. Chu (2001). Significance analysis of microarrays applied to transcriptional responses to ionizing radiation. Proceedings of the National Academy of Science USA 98: 5116-5121.
-
(2001)
Proceedings of the National Academy of Science USA
, vol.98
, pp. 5116-5121
-
-
Tusher, V.1
Tibshirani, R.2
Chu, G.3
-
308
-
-
34047123075
-
Ensemble Learning
-
In: Guyon, I., S. Gunn, M. Nikravesh and L. A. Zadeh, editors. Feature extraction: foundations and applications. New York: Springer-Verlag
-
Tuv, E. (2006). Ensemble Learning. In: Guyon, I., S. Gunn, M. Nikravesh and L. A. Zadeh, editors. Feature extraction: foundations and applications. New York: Springer-Verlag, pp. 187-204.
-
(2006)
, pp. 187-204
-
-
Tuv, E.1
-
309
-
-
84885981282
-
Ensemble-based variable selection using independent probes
-
In: Liu, H. and H. Motoda, editors. Computational methods of feature selection. Boca Raton, FL: Taylor & Francis
-
Tuv, E., A. Borisov and K. Torkkola (2007). Ensemble-based variable selection using independent probes. In: Liu, H. and H. Motoda, editors. Computational methods of feature selection. Boca Raton, FL: Taylor & Francis, pp. 131-145.
-
(2007)
, pp. 131-145
-
-
Tuv, E.1
Borisov, A.2
Torkkola, K.3
-
310
-
-
34548427052
-
Mapping the human proteome using antibodies
-
Uhlen, M. (2007). Mapping the human proteome using antibodies. Molecular and Cellular Proteomics 6(8): 1455-1456.
-
(2007)
Molecular and Cellular Proteomics
, vol.6
, Issue.8
, pp. 1455-1456
-
-
Uhlen, M.1
-
311
-
-
0343376097
-
Difference gel electrophoresis: a single gel method for detecting changes in protein extracts
-
Unlü, M., M. E. Morgan and J. S. Minden (1997). Difference gel electrophoresis: a single gel method for detecting changes in protein extracts. Electrophoresis 18(11): 2071-2077.
-
(1997)
Electrophoresis
, vol.18
, Issue.11
, pp. 2071-2077
-
-
Unlü, M.1
Morgan, M.E.2
Minden, J.S.3
-
312
-
-
35148839816
-
Reverse-phase protein microarrays: application to biomarker discovery and translational medicine
-
VanMeter, A., M. Signore, M. Pierobon, V. Espina, L. A. Liotta and E. F. Petricoin (2007). Reverse-phase protein microarrays: application to biomarker discovery and translational medicine. Expert Review of Molecular Diagnostics 7(5): 625-633.
-
(2007)
Expert Review of Molecular Diagnostics
, vol.7
, Issue.5
, pp. 625-633
-
-
VanMeter, A.1
Signore, M.2
Pierobon, M.3
Espina, V.4
Liotta, L.A.5
Petricoin, E.F.6
-
313
-
-
0003991806
-
Statistical learning theory
-
New York: Wiley
-
Vapnik, V. N. (1998). Statistical learning theory. New York: Wiley.
-
(1998)
-
-
Vapnik, V.N.1
-
314
-
-
0003450542
-
The nature of statistical learning theory
-
New York: Springer
-
Vapnik, V. N. (2000). The nature of statistical learning theory. New York: Springer.
-
(2000)
-
-
Vapnik, V.N.1
-
315
-
-
0035895505
-
The sequence of the human genome
-
Venter, J. C., M. D. Adams, E. W. Myers, P. W. Li, R. J. Mural, G. G. Sutton (2001). The sequence of the human genome. Science 291(5507): 1304-1351.
-
(2001)
Science
, vol.291
, Issue.5507
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
-
316
-
-
10944228588
-
Proteomic approaches in the search for disease biomarkers
-
Vlahou, A. and M. Fountoulakis (2005). Proteomic approaches in the search for disease biomarkers. Journal of Chromatography B 814: 11-19.
-
(2005)
Journal of Chromatography B
, vol.814
, pp. 11-19
-
-
Vlahou, A.1
Fountoulakis, M.2
-
317
-
-
84886075741
-
Peptide chips
-
In: Ganten, D. and K. Ruckpaul, editors. Encyclopedic reference of genomics and proteomics in molecular medicine, Volume 2, New York: Springer
-
Volkmer-Engert, R. (2006). Peptide chips. In: Ganten, D. and K. Ruckpaul, editors. Encyclopedic reference of genomics and proteomics in molecular medicine, Volume 2, New York: Springer, pp. 1372-1377.
-
(2006)
, pp. 1372-1377
-
-
Volkmer-engert, R.1
-
318
-
-
0036206069
-
Guidelines for human gene nomenclature
-
Wain, H. M., E. A. Bruford, R. C. Lovering, M. J. Lush, M. W. Wright and S. Povey (2002). Guidelines for human gene nomenclature. Genomics 79(4): 464-470.
-
(2002)
Genomics
, vol.79
, Issue.4
, pp. 464-470
-
-
Wain, H.M.1
Bruford, E.A.2
Lovering, R.C.3
Lush, M.J.4
Wright, M.W.5
Povey, S.6
-
319
-
-
12444320350
-
Gene selection from microarray data for cancer classification-a machine learning approach
-
Wang, Y., I. V. Tetko, M. A. Hall, E. Frank, A. Facius, K. F. X. Mayer and H.W. Mewes (2005). Gene selection from microarray data for cancer classification-a machine learning approach. Computational Biology and Chemistry 29: 37-46.
-
(2005)
Computational Biology and Chemistry
, vol.29
, pp. 37-46
-
-
Wang, Y.1
Tetko, I.V.2
Hall, M.A.3
Frank, E.4
Facius, A.5
Mayer, K.F.X.6
Mewes, H.W.7
-
320
-
-
44449084105
-
Applied statistics: from bivariate through multivariate techniques
-
Los Angeles: Sage Publications
-
Warner, R. M. (2008). Applied statistics: from bivariate through multivariate techniques. Los Angeles: Sage Publications.
-
(2008)
-
-
Warner, R.M.1
-
321
-
-
0038497542
-
Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid
-
Watson, J. D. and F. H. C. Crick (1953a). Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid. Nature 171(4356): 737-738.
-
(1953)
Nature
, vol.171
, Issue.4356
, pp. 737-738
-
-
Watson, J.D.1
Crick, F.H.C.2
-
322
-
-
33749048664
-
Genetical implications of the structure of deoxyribonucleic acid
-
Watson, J. D. and F. H. C. Crick (1953b). Genetical implications of the structure of deoxyribonucleic acid. Nature 171(4361): 964-967.
-
(1953)
Nature
, vol.171
, Issue.4361
, pp. 964-967
-
-
Watson, J.D.1
Crick, F.H.C.2
-
323
-
-
0004156776
-
Resampling-based multiple testing: examples and methods for P-value adjustment
-
New York: Wiley
-
Westfall, P. H. and S. S. Young (1993). Resampling-based multiple testing: examples and methods for P-value adjustment. New York: Wiley.
-
(1993)
-
-
Westfall, P.H.1
Young, S.S.2
-
325
-
-
42249087308
-
The complete genome of an individual by massively parallel DNA sequencing
-
Wheeler, D. A., M. Srinivasan, M. Egholm, Y. Shen, L. Chen, A. Mcguire (2008). The complete genome of an individual by massively parallel DNA sequencing. Nature 452(7189): 872-876.
-
(2008)
Nature
, vol.452
, Issue.7189
, pp. 872-876
-
-
Wheeler, D.A.1
Srinivasan, M.2
Egholm, M.3
Shen, Y.4
Chen, L.5
Mcguire, A.6
-
326
-
-
36949065046
-
Molecular structure of nucleic acids: Molecular structure of deoxypentose nucleic acids
-
Wilkins, M. H. F., A. R. Stokes and H. R. Wilson (1953). Molecular structure of nucleic acids: Molecular structure of deoxypentose nucleic acids. Nature 171(4356): 738-740.
-
(1953)
Nature
, vol.171
, Issue.4356
, pp. 738-740
-
-
Wilkins, M.H.F.1
Stokes, A.R.2
Wilson, H.R.3
-
327
-
-
38549148703
-
The vertebrate genome annotation (Vega) database
-
Database Issue
-
Wilming, L. G., J. G. Gilbert, K. Howe, S. Trevanion, T. Hubbard and J. L. Harrow (2008). The vertebrate genome annotation (Vega) database. Nucleic Acids Research 36(Database Issue): D753-D760.
-
(2008)
Nucleic Acids Research
, vol.36
-
-
Wilming, L.G.1
Gilbert, J.G.2
Howe, K.3
Trevanion, S.4
Hubbard, T.5
Harrow, J.L.6
-
328
-
-
0003957032
-
Data mining: practical machine learning tools and techniques
-
Boston: Morgan Kaufman
-
Witten, I. H. and E. Frank (2005). Data mining: practical machine learning tools and techniques. Boston: Morgan Kaufman.
-
(2005)
-
-
Witten, I.H.1
Frank, E.2
-
329
-
-
0036855519
-
SELDI proteinchip MS: a platform for biomarker discovery and cancer diagnosis
-
Wright, G. L. J. (2002). SELDI proteinchip MS: a platform for biomarker discovery and cancer diagnosis. Expert Review of Molecular Diagnostics 2(6): 549-563.
-
(2002)
Expert Review of Molecular Diagnostics
, vol.2
, Issue.6
, pp. 549-563
-
-
Wright, G.L.J.1
-
330
-
-
23844551199
-
Stochastic models inspired by hybridization theory for short oligonucleotide arrays
-
Wu, Z. and R. A. Irizarry (2005). Stochastic models inspired by hybridization theory for short oligonucleotide arrays. Journal of Computational Biology 12(6): 882-893.
-
(2005)
Journal of Computational Biology
, vol.12
, Issue.6
, pp. 882-893
-
-
Wu, Z.1
Irizarry, R.A.2
-
331
-
-
10844290766
-
A modelbased background adjustment for oligonucleotide expression arrays
-
Wu, Z., R. A. Irizarry, R. Gentleman, F. Martinez-Murillo and F. Spencer (2004). A modelbased background adjustment for oligonucleotide expression arrays. Journal of the American Statistical Association 99(468): 909-917.
-
(2004)
Journal of the American Statistical Association
, vol.99
, Issue.468
, pp. 909-917
-
-
Wu, Z.1
Irizarry, R.A.2
Gentleman, R.3
Martinez-murillo, F.4
Spencer, F.5
-
332
-
-
17044407257
-
Feature selection in microarray analysis
-
In: Berrar, D. P., W. Dubitzky and M. Granzow, editors. A practical approach to microarray data analysis. Boston: Kluwer Academic Publishers
-
Xing, E. P. (2003). Feature selection in microarray analysis. In: Berrar, D. P., W. Dubitzky and M. Granzow, editors. A practical approach to microarray data analysis. Boston: Kluwer Academic Publishers, pp. 110-131.
-
(2003)
, pp. 110-131
-
-
Xing, E.P.1
-
333
-
-
0003076895
-
Feature selection for high-dimensional genomic microarray data
-
Proceedings of the Eighteenth International Conference on Machine Learning (ICML2001)
-
Xing, E. P., M. I. Jordan and R. M. Karp (2001). Feature selection for high-dimensional genomic microarray data. Proceedings of the Eighteenth International Conference on Machine Learning (ICML2001).
-
(2001)
-
-
Xing, E.P.1
Jordan, M.I.2
Karp, R.M.3
-
334
-
-
33745207094
-
Software for computational peptide identification from MS-MS data
-
Xu, C. and B. Ma (2006). Software for computational peptide identification from MS-MS data. Drug Discovery Today 11(13/14): 595-600.
-
(2006)
Drug Discovery Today
, vol.11
, Issue.13-14
, pp. 595-600
-
-
Xu, C.1
Ma, B.2
-
335
-
-
27844559726
-
Aberrant methylation in promoter-associated CpG islands of multiple genes in acute lymphoblastic leukemia
-
Yang, Y., S. Takeuchi, W. K. Hofmann, T. Ikezoe, J. J. van Dongen, T. Szczepanski (2006). Aberrant methylation in promoter-associated CpG islands of multiple genes in acute lymphoblastic leukemia. Leukemia Research 30(1): 98-102.
-
(2006)
Leukemia Research
, vol.30
, Issue.1
, pp. 98-102
-
-
Yang, Y.1
Takeuchi, S.2
Hofmann, W.K.3
Ikezoe, T.4
Van Dongen, J.J.5
Szczepanski, T.6
-
336
-
-
63149148755
-
Establishment of a new human osteosarcoma cell line, UTOS-1: cytogenetic characterization by array comparative genomic hybridization
-
Yasuda, T., M. Kanamori, S. Nogami, T. Hori, T. Oya, K. Suzuki (2009). Establishment of a new human osteosarcoma cell line, UTOS-1: cytogenetic characterization by array comparative genomic hybridization. Journal of Experimental and Clinical Cancer Research 28: 26.
-
(2009)
Journal of Experimental and Clinical Cancer Research
, vol.28
, pp. 26
-
-
Yasuda, T.1
Kanamori, M.2
Nogami, S.3
Hori, T.4
Oya, T.5
Suzuki, K.6
-
337
-
-
19044399684
-
Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling
-
Yeoh, E. J., M. E. Ross, S. A. Shurtleff, W. K. Williams, D. Patel, R. Mahfouz (2002). Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. Cancer Cell 1(2): 133-143.
-
(2002)
Cancer Cell
, vol.1
, Issue.2
, pp. 133-143
-
-
Yeoh, E.J.1
Ross, M.E.2
Shurtleff, S.A.3
Williams, W.K.4
Patel, D.5
Mahfouz, R.6
-
338
-
-
1542787400
-
Multiclass classification of microarray data with repeated measurements: application to cancer
-
Yeung, K. Y. and R. E. Bumgarner (2003). Multiclass classification of microarray data with repeated measurements: application to cancer. Genome Biology 4(12): R83.
-
(2003)
Genome Biology
, vol.4
, Issue.12
-
-
Yeung, K.Y.1
Bumgarner, R.E.2
-
339
-
-
0033553489
-
A newly identified member of tumor necrosis factor receptor superfamily (TR6) suppresses LIGHT-mediated apoptosis
-
Yu, K., B. Kwon, J. Ni, Y. Zhai, R. Ebner and B. S. Kwon (1999). A newly identified member of tumor necrosis factor receptor superfamily (TR6) suppresses LIGHT-mediated apoptosis. Journal of Biological Chemistry 274(20): 13733-13736.
-
(1999)
Journal of Biological Chemistry
, vol.274
, Issue.20
, pp. 13733-13736
-
-
Yu, K.1
Kwon, B.2
Ni, J.3
Zhai, Y.4
Ebner, R.5
Kwon, B.S.6
-
340
-
-
25144492516
-
Efficient feature selection via analysis of relevance and redundancy
-
Yu, L. and H. Liu (2004). Efficient feature selection via analysis of relevance and redundancy. Journal of Machine Learning Research 5: 1205-1224.
-
(2004)
Journal of Machine Learning Research
, vol.5
, pp. 1205-1224
-
-
Yu, L.1
Liu, H.2
-
341
-
-
84963959317
-
Advanced analysis of gene expression microarray data
-
Singapore: World Scientific
-
Zhang, A. (2006). Advanced analysis of gene expression microarray data. Singapore: World Scientific.
-
(2006)
-
-
Zhang, A.1
-
342
-
-
0034213595
-
ProFound: An expert system for protein identification using mass spectrometric peptide mapping information
-
Zhang, W. and B. T. Chait (2000). ProFound: An expert system for protein identification using mass spectrometric peptide mapping information. Analytical Chemistry 72(11): 2482-2489.
-
(2000)
Analytical Chemistry
, vol.72
, Issue.11
, pp. 2482-2489
-
-
Zhang, W.1
Chait, B.T.2
-
343
-
-
33646377650
-
Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data
-
Zhang, X., X. Lu, Q. Shi, X.-Q. Xu, H.-C. E. Leung, L. N. Harris (2006). Recursive SVM feature selection and sample classification for mass-spectrometry and microarray data. BMC Bioinformatics 7(197).
-
(2006)
BMC Bioinformatics
, vol.7
, Issue.197
-
-
Zhang, X.1
Lu, X.2
Shi, Q.3
Xu, X.-Q.4
Leung, H.-C.E.5
Harris, L.N.6
-
344
-
-
34250377325
-
Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution
-
Zheng, D., A. Frankish, R. Baertsch, P. Kapranov, A. Reymond, S. W. Choo (2007). Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution. Genome Research 17(6): 839-851.
-
(2007)
Genome Research
, vol.17
, Issue.6
, pp. 839-851
-
-
Zheng, D.1
Frankish, A.2
Baertsch, R.3
Kapranov, P.4
Reymond, A.5
Choo, S.W.6
-
345
-
-
34249855141
-
MSVM-RFE: extensions of SVM-RFE for multiclass gene selection on DNA microarray data
-
Zhou, X. and D. P. Tuck (2007). MSVM-RFE: extensions of SVM-RFE for multiclass gene selection on DNA microarray data. Bioinformatics 23(9): 1106-1114.
-
(2007)
Bioinformatics
, vol.23
, Issue.9
, pp. 1106-1114
-
-
Zhou, X.1
Tuck, D.P.2
-
346
-
-
0035860499
-
Global analysis of protein activities using proteome chips
-
Zhu, H., M. Bilgin, R. Bangham, D. Hall, A. Casamayor, P. Bertone (2001). Global analysis of protein activities using proteome chips. Science 293(5537): 2101-2105.
-
(2001)
Science
, vol.293
, Issue.5537
, pp. 2101-2105
-
-
Zhu, H.1
Bilgin, M.2
Bangham, R.3
Hall, D.4
Casamayor, A.5
Bertone, P.6
-
347
-
-
42049122895
-
Model building and feature selection with genomic data
-
In: Liu, H. and H. Motoda, editors. Computational methods of feature selection. Boca Raton, FL: Taylor & Francis
-
Zou, H. and T. Hastie (2007). Model building and feature selection with genomic data. In: Liu, H. and H. Motoda, editors. Computational methods of feature selection. Boca Raton, FL: Taylor & Francis, pp. 393-411.
-
(2007)
, pp. 393-411
-
-
Zou, H.1
Hastie, T.2
|