-
2
-
-
13444304325
-
NCBI GEO: Mining millions of expression profiles-database and tools
-
Database issue
-
Barrett, T., Suzek, T. O., Troup, D. B., Wilhite, S. E., Ngau, W. C., Ledoux, P., Rudnev, D., Lash, A. E., Fujibuchi, W., and Edgar, R. (2005). NCBI GEO: Mining millions of expression profiles-database and tools. Nucleic Acids Res., 33(Database issue):562-566.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 562-566
-
-
Barrett, T.1
Suzek, T.O.2
Troup, D.B.3
Wilhite, S.E.4
Ngau, W.C.5
Ledoux, P.6
Rudnev, D.7
Lash, A.E.8
Fujibuchi, W.9
Edgar, R.10
-
3
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad, B. M., Irizarry, R. A., Astrand, M., and Speed, T. P. (2003). A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics, 19(2):185-193.
-
(2003)
Bioinformatics
, vol.19
, Issue.2
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
4
-
-
47649102969
-
-
Technical report, Queens University, Kingston, ON, Canada
-
Brettschneider, J., Collin, F., Bolstad, B. M., and Speed, T. P. (2006). Quality assessment for short oligonucleotide microarray data. Technical report, Queens University, Kingston, ON, Canada.
-
(2006)
Quality Assessment for Short Oligonucleotide Microarray Data
-
-
Brettschneider, J.1
Collin, F.2
Bolstad, B.M.3
Speed, T.P.4
-
5
-
-
84947318637
-
Locally-weighted regression: An approach to regression analysis by local fitting
-
Cleveland, W. S. and Devlin, S. J. (1988). Locally-weighted regression: An approach to regression analysis by local fitting. J. Am. Stat. Assoc, 83:596-610.
-
(1988)
J. Am. Stat. Assoc
, vol.83
, pp. 596-610
-
-
Cleveland, W.S.1
Devlin, S.J.2
-
6
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgax, R., Domrachev, M., and A. E., Lash (2002). Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res., 30(1):207-210.
-
(2002)
Nucleic Acids Res.
, vol.30
, Issue.1
, pp. 207-210
-
-
Edgax, R.1
Domrachev, M.2
Lash, A.E.3
-
7
-
-
0013139749
-
Maximum likelihood estimation of optimal scaling factors for expression array normalization
-
Hartemink, A. J, Gifford, D. K., Jaakkola, T., and Young, R. A. (2001). Maximum likelihood estimation of optimal scaling factors for expression array normalization. In SPIE BIOS 2001.
-
(2001)
SPIE BIOS 2001
-
-
Hartemink, A.J.1
Gifford, D.K.2
Jaakkola, T.3
Young, R.A.4
-
8
-
-
0004262735
-
-
John Wiley & Sons, Inc, New York, New York
-
Huber, P. J. (1981). Robust Statistics. John Wiley & Sons, Inc, New York, New York.
-
(1981)
Robust Statistics
-
-
Huber, P.J.1
-
9
-
-
11244346557
-
Variance stabilization applied to microarray data calibration and to the quantification of differential expression
-
Huber, W., von Heydebreck, A., Sultmann, H., Poustka, A., and Vingron, M. (2002). Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics, 18 Suppl. 1:S96-S104.
-
(2002)
Bioinformatics
, vol.18
, pp. S96-S104
-
-
Huber, W.1
Von Heydebreck, A.2
Sultmann, H.3
Poustka, A.4
Vingron, M.5
-
10
-
-
12344280017
-
Summaries of Afrymetrix GeneChip probe level data
-
Irizarry, R. A., Bolstad, B. M., Collin, F., Cope, L. M., Hobbs, B., and Speed, T. P. (2003). Summaries of Afrymetrix GeneChip probe level data. Nucleic Acids Res., 31(4):e15.
-
(2003)
Nucleic Acids Res.
, vol.31
, Issue.4
, pp. e15
-
-
Irizarry, R.A.1
Bolstad, B.M.2
Collin, F.3
Cope, L.M.4
Hobbs, B.5
Speed, T.P.6
-
11
-
-
33645326509
-
Comparison of Affymetrix GeneChip expression measures
-
Irizarry, R. A., Z., Wu, and Jaffee, H. A. (2006). Comparison of Affymetrix GeneChip expression measures. Bioinformatics, 22(7):789-794.
-
(2006)
Bioinformatics
, vol.22
, Issue.7
, pp. 789-794
-
-
Irizarry, R.A.1
Wu, Z.2
Jaffee, H.A.3
-
12
-
-
23244457836
-
Dissecting asthma using focused transgenic modeling and functional genomics
-
Kuperman, D. A., Lewis, C. C., Woodruff, P. G., Rodriguez, M. W., Yang, Y. H., Dolganov, G. M., Fahy, J. V., and Erie, D. J. (2005). Dissecting asthma using focused transgenic modeling and functional genomics. J. Allergy Clin. Immunol., 116(2):305-311.
-
(2005)
J. Allergy Clin. Immunol.
, vol.116
, Issue.2
, pp. 305-311
-
-
Kuperman, D.A.1
Lewis, C.C.2
Woodruff, P.G.3
Rodriguez, M.W.4
Yang, Y.H.5
Dolganov, G.M.6
Fahy, J.V.7
Erie, D.J.8
-
13
-
-
0035793042
-
Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection
-
Li, C. and Wong, W. H. (2001a). Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection. Proc. Natl. Acad. Sci. USA, 98(1):31-36.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, Issue.1
, pp. 31-36
-
-
Li, C.1
Wong, W.H.2
-
14
-
-
17744413236
-
Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application
-
RESEARCH0032
-
Li, C. and Wong, W. H. (2001b). Model-based analysis of oligonucleotide arrays: Model validation, design issues and standard error application. Genome Biol, 2(8):RESEARCH0032.
-
(2001)
Genome Biol
, vol.2
, Issue.8
-
-
Li, C.1
Wong, W.H.2
-
15
-
-
0141483023
-
Probe selection for high-density oligonucleotide arrays
-
Mei, R., Hubbell, E., Bekiranov, S., Mittmann, M., Christians, F. C., Shen, M. M., Lu, G., Fang, J., Liu, W. M., Ryder, T., Kaplan, P., Kulp, D., and Webster, T. A. (2003). Probe selection for high-density oligonucleotide arrays. Proc. Natl. Acad. Sci. USA, 100(20):11237-11242.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, Issue.20
, pp. 11237-11242
-
-
Mei, R.1
Hubbell, E.2
Bekiranov, S.3
Mittmann, M.4
Christians, F.C.5
Shen, M.M.6
Lu, G.7
Fang, J.8
Liu, W.M.9
Ryder, T.10
Kaplan, P.11
Kulp, D.12
Webster, T.A.13
-
16
-
-
23144461051
-
Genes that mediate breast cancer metastasis to lung
-
Minn, A. J., Gupta, G. P., Siegel, P. M., Bos, P. D., Shu, W., Giri, D. D., Viale, A., O., A. B., Gerald, W. L., and Massague, J. (2005). Genes that mediate breast cancer metastasis to lung. Nature, 436(7050):518-524.
-
(2005)
Nature
, vol.436
, Issue.7050
, pp. 518-524
-
-
Minn, A.J.1
Gupta, G.P.2
Siegel, P.M.3
Bos, P.D.4
Shu, W.5
Giri, D.D.6
Viale, A.O.A.B.7
Gerald, W.L.8
Massague, J.9
-
18
-
-
10844290766
-
A model-based background adjustment for oligonucleotide expression arrays
-
Wu, Z., Irizarry, R. A., Gentleman, R., Martinez-Murillo, F., and Spencer, F. (2004). A model-based background adjustment for oligonucleotide expression arrays. J. Am. Stat. Ass., 99(468):909-917.
-
(2004)
J. Am. Stat. Ass.
, vol.99
, Issue.468
, pp. 909-917
-
-
Wu, Z.1
Irizarry, R.A.2
Gentleman, R.3
Martinez-Murillo, F.4
Spencer, F.5
-
19
-
-
0036004157
-
Comparison of methods for image analysis of cDNA microarray data
-
Yang, Y. H., Buckley, M. J., Dudoit, S., and Speed, T. P. (2002a). Comparison of methods for image analysis of cDNA microarray data. J. Comp. Graph. Stat, 11:108-136.
-
(2002)
J. Comp. Graph. Stat
, vol.11
, pp. 108-136
-
-
Yang, Y.H.1
Buckley, M.J.2
Dudoit, S.3
Speed, T.P.4
-
20
-
-
0035751799
-
Analysis of cDNA microarray images
-
Yang, Y. H., Buckley, M. J., and Speed, T. P. (2001). Analysis of cDNA microarray images. Brief. Bioinform., 2(4):341-349.
-
(2001)
Brief. Bioinform.
, vol.2
, Issue.4
, pp. 341-349
-
-
Yang, Y.H.1
Buckley, M.J.2
Speed, T.P.3
-
21
-
-
1342294092
-
Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
-
Yang, Y. H., Dudoit, S., Luu, P., Lin, D. M., Peng, V., Ngai, J., and Speed, T. P. (2002b). Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res., 30(4):e15.
-
(2002)
Nucleic Acids Res.
, vol.30
, Issue.4
, pp. e15
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
|