메뉴 건너뛰기




Volumn 7, Issue , 2006, Pages

Effects of filtering by Present call on analysis of microarray experiments

Author keywords

[No Author keywords available]

Indexed keywords

AFFYMETRIX MICROARRAYS; DIFFERENT SIZES; EXPRESSION LEVELS; EXPRESSION PROFILING; FALSE DISCOVERY RATE; MICROARRAY EXPERIMENTS; ROBUST MULTICHIP AVERAGES; TREATMENT GROUP;

EID: 33645143721     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-7-49     Document Type: Article
Times cited : (200)

References (24)
  • 1
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y: Controlling the false discovery rate: A practical and powerful approach to multiple testing. J R Stat Soc B 1995, 57:289-300.
    • (1995) J R Stat Soc B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 2
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey JD, Tibshirani R: Statistical significance for genomewide studies. Proc Natl Acad Sci U S A 2003, 100:9440-9445.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 6
    • 0036947892 scopus 로고    scopus 로고
    • Robust estimators for expression analysis
    • Hubbell E, Liu WM, Mei R: Robust estimators for expression analysis. Bioinformatics 2002, 18:1585-1592.
    • (2002) Bioinformatics , vol.18 , pp. 1585-1592
    • Hubbell, E.1    Liu, W.M.2    Mei, R.3
  • 7
    • 5144229762 scopus 로고    scopus 로고
    • Immediate gene expression changes after the first course of neoadjuvant chemotherapy in patients with primary breast cancer disease
    • Modlich O, Prisack HB, Munnes M, Audretsch W, Bojar H: Immediate gene expression changes after the first course of neoadjuvant chemotherapy in patients with primary breast cancer disease. Clin Cancer Res 2004, 10:6418-6431.
    • (2004) Clin Cancer Res , vol.10 , pp. 6418-6431
    • Modlich, O.1    Prisack, H.B.2    Munnes, M.3    Audretsch, W.4    Bojar, H.5
  • 8
    • 1942517450 scopus 로고    scopus 로고
    • Gene expression changes in peripheral blood-derived dendritic cells following exposure to a contact allergen
    • Ryan CA, Gildea LA, Hulette BC, Dearman RJ, Kimber I, Gerberick GF: Gene expression changes in peripheral blood-derived dendritic cells following exposure to a contact allergen. Toxical Lett 2004, 150:301-316.
    • (2004) Toxical Lett , vol.150 , pp. 301-316
    • Ryan, C.A.1    Gildea, L.A.2    Hulette, B.C.3    Dearman, R.J.4    Kimber, I.5    Gerberick, G.F.6
  • 9
    • 0042880770 scopus 로고    scopus 로고
    • Gene alteration of intestinal intraepithelial lymphocytes in response to massive small bowel resection
    • Wildhaber BE, Yang H, Coran AG, Teitelbaum DH: Gene alteration of intestinal intraepithelial lymphocytes in response to massive small bowel resection. Pediatr Surg Int 2003, 19:310-315.
    • (2003) Pediatr Surg Int , vol.19 , pp. 310-315
    • Wildhaber, B.E.1    Yang, H.2    Coran, A.G.3    Teitelbaum, D.H.4
  • 10
    • 2442694078 scopus 로고    scopus 로고
    • Distinct transcriptional programs activated by interleukin- 10 with or without lipopolysaccharide in dendritic cells: Induction of the B cell-activating chemokine, CXC chemokine ligand 13
    • Perrier P, Martinez FO, Locati M, Bianchi G, Nebuloni M, Vago G, Bazzoni F, Sozzani S, Allavena P, Mantovani A: Distinct transcriptional programs activated by interleukin- 10 with or without lipopolysaccharide in dendritic cells: induction of the B cell-activating chemokine, CXC chemokine ligand 13. J Immunol 2004, 172:7031-7042.
    • (2004) J Immunol , vol.172 , pp. 7031-7042
    • Perrier, P.1    Martinez, F.O.2    Locati, M.3    Bianchi, G.4    Nebuloni, M.5    Vago, G.6    Bazzoni, F.7    Sozzani, S.8    Allavena, P.9    Mantovani, A.10
  • 11
    • 3042681155 scopus 로고    scopus 로고
    • Transcriptional profiling of estrogen-regulated gene expression via estrogen receptor (ER) alpha or ERbeta in human osteosarcoma cells: Distinct and common target genes for these receptors
    • Stossi F, Barnett DH, Frasor J, Komm B, Lyttle CR, Katzenellenbogen BS: Transcriptional profiling of estrogen-regulated gene expression via estrogen receptor (ER) alpha or ERbeta in human osteosarcoma cells: distinct and common target genes for these receptors. Endocrinology 2004, 145:3473-3486.
    • (2004) Endocrinology , vol.145 , pp. 3473-3486
    • Stossi, F.1    Barnett, D.H.2    Frasor, J.3    Komm, B.4    Lyttle, C.R.5    Katzenellenbogen, B.S.6
  • 12
    • 16844375518 scopus 로고    scopus 로고
    • Transcriptional profiling reveals evidence for signaling and oligodendroglial abnormalities in the temporal cortex from patients with major depressive disorder
    • Aston C, Jiang L, Sokolov BP: Transcriptional profiling reveals evidence for signaling and oligodendroglial abnormalities in the temporal cortex from patients with major depressive disorder. Mol Psychiatry 2004.
    • (2004) Mol Psychiatry
    • Aston, C.1    Jiang, L.2    Sokolov, B.P.3
  • 14
    • 3543133355 scopus 로고    scopus 로고
    • Interactively optimizing signal-to-noise ratios in expression profiling: Project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays
    • Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP: Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays. Bioinformatics 2004, 20:2534-2544.
    • (2004) Bioinformatics , vol.20 , pp. 2534-2544
    • Seo, J.1    Bakay, M.2    Chen, Y.W.3    Hilmer, S.4    Shneiderman, B.5    Hoffman, E.P.6
  • 17
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • Bolstad BM, Irizarry RA, Astrand M, Speed TP: A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 2003, 19:185-193.
    • (2003) Bioinformatics , vol.19 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 19
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher VG, Tibshirani R, Chu G: Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A 2001, 98:5116-5121.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 20
    • 0141626917 scopus 로고    scopus 로고
    • The effect of replication on gene expression microarray experiments
    • Pavlidis P, Li Q, Noble WS: The effect of replication on gene expression microarray experiments. Bioinformatics 2003, 19:1620-1627.
    • (2003) Bioinformatics , vol.19 , pp. 1620-1627
    • Pavlidis, P.1    Li, Q.2    Noble, W.S.3
  • 24
    • 0004252445 scopus 로고    scopus 로고
    • Biostatistical Analysis
    • Upper Saddle River, NJ, Prentice Hall
    • Zar JH: Biostatistical Analysis. Upper Saddle River, NJ, Prentice Hall; 1999.
    • (1999)
    • Zar, J.H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.