-
1
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
International Human Genome Sequencing Consortium
-
International Human Genome Sequencing Consortium (2001) Initial sequencing and analysis of the human genome. Nature, 409, 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
2
-
-
0035895505
-
The sequence of the human genome
-
Venter, J.C., Adams, M.D., Myers, E.W., Li, P.W., Mural, R.J., Sutton, G.G., Smith, H.O., Yandell, M., Evans, C.A. et al. (2001) The sequence of the human genome. Science, 291, 1304-1351.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
Sutton, G.G.6
Smith, H.O.7
Yandell, M.8
Evans, C.A.9
-
3
-
-
33846078622
-
The UCSC genome browser database: Update 2007
-
Kuhn, R.M., Karolchik, D., Zweig, A.S., Trumbower, H., Thomas, D.J., Thakkapallayil, A., Sugnet, C.W., Stanke, M., Smith, K.E. et al. (2007) The UCSC genome browser database: Update 2007. Nucleic Acids Res., 35, D668-D673.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Kuhn, R.M.1
Karolchik, D.2
Zweig, A.S.3
Trumbower, H.4
Thomas, D.J.5
Thakkapallayil, A.6
Sugnet, C.W.7
Stanke, M.8
Smith, K.E.9
-
4
-
-
33846062023
-
Database resources of the National Center for Biotechnology Information
-
Wheeler, D.L., Barrett, T., Benson, D.A., Bryant, S.H., Canese, K., Chetvernin, V., Church, D.M., DiCuccio, M., Edgar, R. et al. (2007) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 35, D5-D12.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Wheeler, D.L.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
Chetvernin, V.6
Church, D.M.7
DiCuccio, M.8
Edgar, R.9
-
5
-
-
0035173378
-
dbSNP: The NCBI database of genetic variation
-
Sherry, S.T., Ward, M.H., Kholodov, M., Baker, J., Phan, L., Smigielski, E.M. and Sirotkin, K. (2001) dbSNP: The NCBI database of genetic variation. Nucleic Acids Res., 29, 308-311.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 308-311
-
-
Sherry, S.T.1
Ward, M.H.2
Kholodov, M.3
Baker, J.4
Phan, L.5
Smigielski, E.M.6
Sirotkin, K.7
-
6
-
-
9144269670
-
EnsMart: A generic system for fast and flexible access to biological data
-
Kasprzyk, A., Keefe, D., Smedley, D., London, D., Spooner, W., Melsopp, C., Hammond, M., Rocca-Serra, P., Cox, T. et al. (2004) EnsMart: A generic system for fast and flexible access to biological data. Genome Res, 14, 160-169.
-
(2004)
Genome Res
, vol.14
, pp. 160-169
-
-
Kasprzyk, A.1
Keefe, D.2
Smedley, D.3
London, D.4
Spooner, W.5
Melsopp, C.6
Hammond, M.7
Rocca-Serra, P.8
Cox, T.9
-
7
-
-
33846039019
-
-
Hubbard, T.J., Aken, B.L., Beal, K., Ballester, B., Caccamo, M., Chen, Y., Clarke, L., Coates, G., Cunningham, F. et al. (2007) Ensembl 2007. Nucleic Acids Res., 35, D610-D617.
-
Hubbard, T.J., Aken, B.L., Beal, K., Ballester, B., Caccamo, M., Chen, Y., Clarke, L., Coates, G., Cunningham, F. et al. (2007) Ensembl 2007. Nucleic Acids Res., 35, D610-D617.
-
-
-
-
8
-
-
2442689013
-
The Ensembl analysis pipeline
-
Potter, S.C., Clarke, L., Curwen, V., Keenan, S., Mongin, E., Searle, S.M., Stabenau, A., Storey, R. and Clamp, M. (2004) The Ensembl analysis pipeline. Genome Res., 14, 934-941.
-
(2004)
Genome Res
, vol.14
, pp. 934-941
-
-
Potter, S.C.1
Clarke, L.2
Curwen, V.3
Keenan, S.4
Mongin, E.5
Searle, S.M.6
Stabenau, A.7
Storey, R.8
Clamp, M.9
-
9
-
-
33845643077
-
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
-
Rayner, T.F., Rocca-Serra, P., Spellman, P.T., Causton, H.C., Farne, A., Holloway, E., Irizarry, R.A., Liu, J., Maier, D.S. et al. (2006) A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinformatics, 7, 489.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 489
-
-
Rayner, T.F.1
Rocca-Serra, P.2
Spellman, P.T.3
Causton, H.C.4
Farne, A.5
Holloway, E.6
Irizarry, R.A.7
Liu, J.8
Maier, D.S.9
-
10
-
-
33846057724
-
NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins
-
Pruitt, K.D., Tatusova, T. and Maglott, D.R. (2007) NCBI reference sequences (RefSeq): A curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res., 35, D61-D65.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
11
-
-
2442713832
-
GeneWise and Genomewise
-
Birney, E., Clamp, M. and Durbin, R. (2004) GeneWise and Genomewise. Genome Res., 14, 988-995.
-
(2004)
Genome Res
, vol.14
, pp. 988-995
-
-
Birney, E.1
Clamp, M.2
Durbin, R.3
-
12
-
-
24044447664
-
Automated generation of heuristics for biological sequence comparison
-
Slater, G.S. and Birney, E. (2005) Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics, 6, 31.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 31
-
-
Slater, G.S.1
Birney, E.2
-
13
-
-
7444262496
-
The status, quality, and expansion of the NIH full-length cDNA project: The Mammalian Gene Collection (MGC)
-
MGC Project Team
-
MGC Project Team (2004) The status, quality, and expansion of the NIH full-length cDNA project: The Mammalian Gene Collection (MGC). Genome Res., 14, 2121-2127.
-
(2004)
Genome Res
, vol.14
, pp. 2121-2127
-
-
-
14
-
-
20844463584
-
Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation
-
Ng, P., Wei, C.L., Sung, W.K., Chiu, K.P., Lipovich, L., Ang, C.C., Gupta, S., Shahab, A., Ridwan, A. et al. (2005) Gene identification signature (GIS) analysis for transcriptome characterization and genome annotation. Nat. Methods, 2, 105-111.
-
(2005)
Nat. Methods
, vol.2
, pp. 105-111
-
-
Ng, P.1
Wei, C.L.2
Sung, W.K.3
Chiu, K.P.4
Lipovich, L.5
Ang, C.C.6
Gupta, S.7
Shahab, A.8
Ridwan, A.9
-
15
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci, P., Kasukawa, T., Katayama, S., Gough, J., Frith, M.C., Maeda, N., Oyama, R., Ravasi, T., Lenhard, B. et al. (2005) The transcriptional landscape of the mammalian genome, Science, 309 1559-1563.
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
Gough, J.4
Frith, M.C.5
Maeda, N.6
Oyama, R.7
Ravasi, T.8
Lenhard, B.9
-
16
-
-
34250334695
-
Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs)
-
Ruan, Y., Ooi, H.S., Choo, S.W., Chiu, K.P., Zhao, X.D., Srinivasan, K.G., Yao, F., Choo, C.Y., Liu, J. et al. (2007) Fusion transcripts and transcribed retrotransposed loci discovered through comprehensive transcriptome analysis using Paired-End diTags (PETs). Genome Res., 17, 828-838.
-
(2007)
Genome Res
, vol.17
, pp. 828-838
-
-
Ruan, Y.1
Ooi, H.S.2
Choo, S.W.3
Chiu, K.P.4
Zhao, X.D.5
Srinivasan, K.G.6
Yao, F.7
Choo, C.Y.8
Liu, J.9
-
17
-
-
13444312023
-
IMGT, the international ImMunoGeneTics information system
-
Lefranc, M.P., Giudicelli, V., Kaas, Q., Duprat, E., Jabado-Michaloud, J., Scaviner, D., Ginestoux, C., Clément, O., Chaume, D. et al. (2005) IMGT, the international ImMunoGeneTics information system. Nucleic Acids Res., 33, D593-D597.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Lefranc, M.P.1
Giudicelli, V.2
Kaas, Q.3
Duprat, E.4
Jabado-Michaloud, J.5
Scaviner, D.6
Ginestoux, C.7
Clément, O.8
Chaume, D.9
-
18
-
-
33845212250
-
Anticipating the 1,000 dollar genome
-
Mardis, E.R. (2006) Anticipating the 1,000 dollar genome. Genome Biol., 7, 112.
-
(2006)
Genome Biol
, vol.7
, pp. 112
-
-
Mardis, E.R.1
-
19
-
-
33750953227
-
Whole-genome re-sequencing
-
Bentley, D.R. (2006) Whole-genome re-sequencing. Curr. Opin. Genet. Dev., 16, 545-552.
-
(2006)
Curr. Opin. Genet. Dev
, vol.16
, pp. 545-552
-
-
Bentley, D.R.1
-
20
-
-
35648976118
-
The diploid genome sequence of an individual human
-
Levy, S., Sutton, G., Ng, P.C., Feuk, L., Halpern, A.L., Walenz, B.P., Axelrod, N. Huang, J., Kirkness, E.F. et al. (2007) The diploid genome sequence of an individual human. PLoS Biol., 5, e254.
-
(2007)
PLoS Biol
, vol.5
-
-
Levy, S.1
Sutton, G.2
Ng, P.C.3
Feuk, L.4
Halpern, A.L.5
Walenz, B.P.6
Axelrod, N.7
Huang, J.8
Kirkness, E.F.9
-
21
-
-
0034764307
-
SSAHA: A fast search method for large DNA databases
-
Ning, Z., Cox, A.J. and Mullikin, J.C. (2001) SSAHA: A fast search method for large DNA databases. Genome Res., 11, 1725-1729.
-
(2001)
Genome Res
, vol.11
, pp. 1725-1729
-
-
Ning, Z.1
Cox, A.J.2
Mullikin, J.C.3
-
22
-
-
33746540479
-
TranscriptSNPView: A genome-wide catalog of mouse coding variation
-
Cunningham, F., Rios, D, Griffiths, M., Smith, J., Ning, Z., Cox, T., Flicek, P., Marin-Garcin, P., Herrero, J. et al. (2006) TranscriptSNPView: A genome-wide catalog of mouse coding variation. Nat. Genet., 38, 853.
-
(2006)
Nat. Genet
, vol.38
, pp. 853
-
-
Cunningham, F.1
Rios, D.2
Griffiths, M.3
Smith, J.4
Ning, Z.5
Cox, T.6
Flicek, P.7
Marin-Garcin, P.8
Herrero, J.9
-
23
-
-
2942547885
-
The distributed annotation system
-
Dowell, R.D., Jokerst, R.M., Day, A., Eddy, S.R. and Stein, L. (2001) The distributed annotation system. BMC Bioinformatics, 2, 7.
-
(2001)
BMC Bioinformatics
, vol.2
, pp. 7
-
-
Dowell, R.D.1
Jokerst, R.M.2
Day, A.3
Eddy, S.R.4
Stein, L.5
-
24
-
-
33644876924
-
-
Birney, E., Andrews, D., Caccamo, M., Chen, Y., Clarke, L., Coates, G., Cox, T., Cunningham, F., Curwen, V. et al. (2006) Ensembl 2006. Nucleic Acids Res., 34, D556-D561.
-
Birney, E., Andrews, D., Caccamo, M., Chen, Y., Clarke, L., Coates, G., Cox, T., Cunningham, F., Curwen, V. et al. (2006) Ensembl 2006. Nucleic Acids Res., 34, D556-D561.
-
-
-
-
25
-
-
35349029801
-
Integrating sequence and structural biology with DAS
-
Prlic, A., Down, T.A., Kulesha, E., Finn, R.D., Kahari, A. and Hubbard, T.J. (2007) Integrating sequence and structural biology with DAS. BMC Bioinformatics, 8, 333.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 333
-
-
Prlic, A.1
Down, T.A.2
Kulesha, E.3
Finn, R.D.4
Kahari, A.5
Hubbard, T.J.6
-
26
-
-
2442666425
-
The Ensembl core software libraries
-
Stabenau, A., McVicker, G., Melsopp, C., Proctor, G., Clamp, M. and Birney, E. (2004) The Ensembl core software libraries. Genome Res. 14, 929-933.
-
(2004)
Genome Res
, vol.14
, pp. 929-933
-
-
Stabenau, A.1
McVicker, G.2
Melsopp, C.3
Proctor, G.4
Clamp, M.5
Birney, E.6
-
27
-
-
34250365369
-
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
-
Margulies, E.H., Cooper, G.M., Asimenos, G., Thomas, D.J., Dewey, C.N., Siepel, A., Birney, E., Keefe, D., Schwartz, A.S. et al. (2007) Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome. Genome Res., 17, 760-774.
-
(2007)
Genome Res
, vol.17
, pp. 760-774
-
-
Margulies, E.H.1
Cooper, G.M.2
Asimenos, G.3
Thomas, D.J.4
Dewey, C.N.5
Siepel, A.6
Birney, E.7
Keefe, D.8
Schwartz, A.S.9
-
28
-
-
22244452677
-
-
Cooper, G.M., Stone, E.A., Asimenos, G., NISC Comparative Sequencing ProgramGreen, E.D., Batzoglou, S. and Sidow, A. (2005) Distribution and intensity of constraint in mammalian genomic sequence. Genome Res. 15, 901-913.
-
Cooper, G.M., Stone, E.A., Asimenos, G., NISC Comparative Sequencing ProgramGreen, E.D., Batzoglou, S. and Sidow, A. (2005) Distribution and intensity of constraint in mammalian genomic sequence. Genome Res. 15, 901-913.
-
-
-
-
29
-
-
34547400458
-
Active and repressive chromatin are interspersed without spreading in an imprinted gene duster in the mammalian genome
-
Regha, K., Sloane, M.A., Huang, R., Pauler, F.M., Warczok, K.E., Melikant, B., Radolf, M., Martens, J.H., Schotta, G. et al. (2007) Active and repressive chromatin are interspersed without spreading in an imprinted gene duster in the mammalian genome. Mol. Cell, 27 353-366.
-
(2007)
Mol. Cell
, vol.27
, pp. 353-366
-
-
Regha, K.1
Sloane, M.A.2
Huang, R.3
Pauler, F.M.4
Warczok, K.E.5
Melikant, B.6
Radolf, M.7
Martens, J.H.8
Schotta, G.9
-
30
-
-
84969213492
-
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
-
Wellcome Trust Case Control Consortium
-
Wellcome Trust Case Control Consortium (2007) Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. Nature, 447, 661-678.
-
(2007)
Nature
, vol.447
, pp. 661-678
-
-
|