-
1
-
-
0029805706
-
The new genomics: global views of biology
-
Lander, E.S. (1996) The new genomics: global views of biology. Science, 274 (5287), 536-539.
-
(1996)
Science
, vol.274
, Issue.5287
, pp. 536-539
-
-
Lander, E.S.1
-
2
-
-
0033529707
-
Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis
-
Winzeler, E.A., Shoemaker, D.D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J.D., Bussey, H., Chu, A.M., Connelly, C., Davis, K., Dietrich, F., Dow, S.W., El Bakkoury, M., Foury, F., Friend, S.H., Gentalen, E., Giaever, G., Hegemann, J.H., Jones, T., Laub, M., Liao, H., Liebundguth, N., Lockhart, D.J., Lucau-Danila, A., Lussier, M., M'Rabet, N., Menard, P., Mittmann, M., Pai, C., Rebischung, C., Revuelta, J.L., Riles, L., Roberts, C.J., Ross-MacDonald, P., Scherens, B., Snyder, M., Sookhai-Mahadeo, S., Storms, R.K., Véronneau, S., Voet, M., Volckaert, G., Ward, T.R., Wysocki, R., Yen, G.S., Yu, K., Zimmermann, K., Philippsen, P., Johnston, M. and Davis, R.W. (1999) Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. Science, 285 (5429), 901-906.
-
(1999)
Science
, vol.285
, Issue.5429
, pp. 901-906
-
-
Winzeler, E.A.1
Shoemaker, D.D.2
Astromoff, A.3
Liang, H.4
Anderson, K.5
Andre, B.6
Bangham, R.7
Benito, R.8
Boeke, J.D.9
Bussey, H.10
Chu, A.M.11
Connelly, C.12
Davis, K.13
Dietrich, F.14
Dow, S.W.15
El Bakkoury, M.16
Foury, F.17
Friend, S.H.18
Gentalen, E.19
Giaever, G.20
Hegemann, J.H.21
Jones, T.22
Laub, M.23
Liao, H.24
Liebundguth, N.25
Lockhart, D.J.26
Lucau-Danila, A.27
Lussier, M.28
M'Rabet, N.29
Menard, P.30
Mittmann, M.31
Pai, C.32
Rebischung, C.33
Revuelta, J.L.34
Riles, L.35
Roberts, C.J.36
Ross-MacDonald, P.37
Scherens, B.38
Snyder, M.39
Sookhai-Mahadeo, S.40
Storms, R.K.41
Véronneau, S.42
Voet, M.43
Volckaert, G.44
Ward, T.R.45
Wysocki, R.46
Yen, G.S.47
Yu, K.48
Zimmermann, K.49
Philippsen, P.50
Johnston, M.51
Davis, R.W.52
more..
-
3
-
-
0032895836
-
Comprehensive evaluation of isoprenoid biosynthesis regulation in Saccharomyces cerevisiae utilizing the Genome Reporter Matrix
-
Dimster-Denk, D., Rine, J., Phillips, J., Scherer, S., Cundiff, P., DeBord, K., Gilliland, D., Hickman, S., Jarvis, A., Tong, L. and Ashby, M. (1999) Comprehensive evaluation of isoprenoid biosynthesis regulation in Saccharomyces cerevisiae utilizing the Genome Reporter Matrix. Journal of Liposome Research, 40 (5), 850-860.
-
(1999)
Journal of Liposome Research
, vol.40
, Issue.5
, pp. 850-860
-
-
Dimster-Denk, D.1
Rine, J.2
Phillips, J.3
Scherer, S.4
Cundiff, P.5
DeBord, K.6
Gilliland, D.7
Hickman, S.8
Jarvis, A.9
Tong, L.10
Ashby, M.11
-
4
-
-
33746708843
-
A cultivated taste for yeast
-
Brenner, C. (2000) A cultivated taste for yeast. Genome Biology, 1 (1), 1031-1034.
-
(2000)
Genome Biology
, vol.1
, Issue.1
, pp. 1031-1034
-
-
Brenner, C.1
-
5
-
-
0028114541
-
Molecular computation of solutions to combinatorial problems
-
Adleman, L.M. (1994) Molecular computation of solutions to combinatorial problems. Science, 266 (5187), 1021-1024.
-
(1994)
Science
, vol.266
, Issue.5187
, pp. 1021-1024
-
-
Adleman, L.M.1
-
6
-
-
33745751254
-
Theoretical and Experimental DNA Computation
-
Springer
-
Amos, M. (2005) Theoretical and Experimental DNA Computation, Springer.
-
(2005)
-
-
Amos, M.1
-
7
-
-
0013786552
-
A quantitative assay for DNA-RNA hybrids with DNA immobilized on a membrane
-
Gillespie, D. and Spiegelman, S. (1965) A quantitative assay for DNA-RNA hybrids with DNA immobilized on a membrane. Journal of Molecular Biology, 12 (3), 829-842.
-
(1965)
Journal of Molecular Biology
, vol.12
, Issue.3
, pp. 829-842
-
-
Gillespie, D.1
Spiegelman, S.2
-
8
-
-
0017690216
-
Method for detection of specific RNAs in agarose gels by transfer to diazobenzylmethyl-paper and hybridization with DNA probes
-
Allwine, J.C., Kemp, D.J. and Stark, G.R. (1977) Method for detection of specific RNAs in agarose gels by transfer to diazobenzylmethyl-paper and hybridization with DNA probes. Proceedings of the National Academy of Sciences of the United States of America, 74, 5350-5354.
-
(1977)
Proceedings of the National Academy of Sciences of the United States of America
, vol.74
, pp. 5350-5354
-
-
Allwine, J.C.1
Kemp, D.J.2
Stark, G.R.3
-
9
-
-
0018797541
-
Filter replicas and permanent collections of recombinant DNA plasmids
-
Gergen, J.P., Stern, R.H. and Wensink, P.C. (1979) Filter replicas and permanent collections of recombinant DNA plasmids. Nucleic Acids Research, 7 (8), 2115-2136.
-
(1979)
Nucleic Acids Research
, vol.7
, Issue.8
, pp. 2115-2136
-
-
Gergen, J.P.1
Stern, R.H.2
Wensink, P.C.3
-
10
-
-
0002112580
-
The disease resistance response in pea is associated with increased levels of specific mRNAs
-
Riggleman, R.C., Fristensky, B. and Hadwiger, L.A. (1985) The disease resistance response in pea is associated with increased levels of specific mRNAs. Journal Plant Molecular Biology, 4 (2-3), 81-86.
-
(1985)
Journal Plant Molecular Biology
, vol.4
, Issue.2-3
, pp. 81-86
-
-
Riggleman, R.C.1
Fristensky, B.2
Hadwiger, L.A.3
-
11
-
-
0026347009
-
Multianalyte microspot immunoassay-microanalytical ''compact disk'' of the future
-
Ekins, R.P. and Chu, F.W. (1991) Multianalyte microspot immunoassay-microanalytical ''compact disk'' of the future. Clinical Chemistry, 37 (11), 1955-1967.
-
(1991)
Clinical Chemistry
, vol.37
, Issue.11
, pp. 1955-1967
-
-
Ekins, R.P.1
Chu, F.W.2
-
12
-
-
0031721161
-
Ligand assays: from electrophoresis to miniaturized microarrays
-
Ekins, R.P. (1998) Ligand assays: from electrophoresis to miniaturized microarrays. Clinical Chemistry, 44 (9), 2015-2030.
-
(1998)
Clinical Chemistry
, vol.44
, Issue.9
, pp. 2015-2030
-
-
Ekins, R.P.1
-
13
-
-
5744253291
-
DNA Microarrays: a new tool for genetic analysis
-
Stanford University. Ph.D. thesis
-
Shalon, T.D. (1995) DNA Microarrays: a new tool for genetic analysis.Stanford University. Ph.D. thesis.
-
(1995)
-
-
Shalon, T.D.1
-
14
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
Lockhart, D.J., Dong, H., Byrne, M.C., Follettie, M.T., Gallo, M.V., Chee, M.S., Mittmann, M.,Wang, C., Kobayashi, M., Horton, H. and Brown, E.L. (1996) Expression monitoring by hybridization to high-density oligonucleotide arrays. Nature Biotechnology, 14 (13), 1675-1680.
-
(1996)
Nature Biotechnology
, vol.14
, Issue.13
, pp. 1675-1680
-
-
Lockhart, D.J.1
Dong, H.2
Byrne, M.C.3
Follettie, M.T.4
Gallo, M.V.5
Chee, M.S.6
Mittmann, M.7
Wang, C.8
Kobayashi, M.9
Horton, H.10
Brown, E.L.11
-
15
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena, M., Shalon, D., Davis, R.W. and Brown, P.O. (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science, 270 (5235), 467-470.
-
(1995)
Science
, vol.270
, Issue.5235
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
16
-
-
84984934477
-
Expression profiling using cDNA microarrays
-
Duggan, D.J., Bittner, M., Chen, Y., Meltzer, P. and Trent, J.M. (1999) Expression profiling using cDNA microarrays. Nature Genetics, 21 (1 Suppl.), 10-14.
-
(1999)
Nature Genetics
, vol.21
, Issue.1 SUPPL
, pp. 10-14
-
-
Duggan, D.J.1
Bittner, M.2
Chen, Y.3
Meltzer, P.4
Trent, J.M.5
-
17
-
-
84984932472
-
Exploring the new world of the genome with DNA microarrays
-
Review
-
Brown, P.O. and Botstein, D. (1999) Exploring the new world of the genome with DNA microarrays. Nature Genetics, 21 (1 Suppl.), 33-37. Review.
-
(1999)
Nature Genetics
, vol.21
, Issue.1 SUPPL
, pp. 33-37
-
-
Brown, P.O.1
Botstein, D.2
-
18
-
-
0026108692
-
Light-directed, spatially addressable parallel chemical synthesis
-
Fodor, S.P., Read, J.L., Pirrung, M.C., Stryer, L., Lu, A.T. and Solas, D. (1991) Light-directed, spatially addressable parallel chemical synthesis. Science, 251 (4995), 767-773.
-
(1991)
Science
, vol.251
, Issue.4995
, pp. 767-773
-
-
Fodor, S.P.1
Read, J.L.2
Pirrung, M.C.3
Stryer, L.4
Lu, A.T.5
Solas, D.6
-
19
-
-
0028246289
-
Light-generated oligonucleotide arrays for rapid DNA sequence analysis
-
Pease, A.C., Solas, D., Sullivan, E.J., Cronin, M.T., Holmes, C.P. and Fodor, S.P. (1994) Light-generated oligonucleotide arrays for rapid DNA sequence analysis. Proceedings of the National Academy of Sciences of the United States of America, 91 (11), 5022-5026.
-
(1994)
Proceedings of the National Academy of Sciences of the United States of America
, vol.91
, Issue.11
, pp. 5022-5026
-
-
Pease, A.C.1
Solas, D.2
Sullivan, E.J.3
Cronin, M.T.4
Holmes, C.P.5
Fodor, S.P.6
-
20
-
-
0141966130
-
Statistical Algorithms description document
-
Affymetrix Technical Report
-
Affymetrix( (2002) Statistical Algorithms description document. Technical Report.
-
(2002)
-
-
-
21
-
-
33645326509
-
Comparison of Affymetrix GeneChip expression measures
-
Irizarry, R.A., Wu, Z. and Jaffee, H.A. (2006) Comparison of Affymetrix GeneChip expression measures. Bioinformatics, 22 (7), 789-794.
-
(2006)
Bioinformatics
, vol.22
, Issue.7
, pp. 789-794
-
-
Irizarry, R.A.1
Wu, Z.2
Jaffee, H.A.3
-
22
-
-
0032829373
-
Cheap DNA arrays-it's not all smoke and mirrors
-
Blanchard, A.P. and Friend, S.H. (1999) Cheap DNA arrays-it's not all smoke and mirrors. Nature Biotechnology, 17 (10), 953.
-
(1999)
Nature Biotechnology
, vol.17
, Issue.10
, pp. 953
-
-
Blanchard, A.P.1
Friend, S.H.2
-
23
-
-
0032846163
-
Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array
-
Singh-Gasson, S., Green, R.D., Yue, Y., Nelson, C., Blattner, F., Sussman, M.R. and Cerrina, F. (1999) Maskless fabrication of light-directed oligonucleotide microarrays using a digital micromirror array. Nature Biotechnology, 17 (10), 974-978.
-
(1999)
Nature Biotechnology
, vol.17
, Issue.10
, pp. 974-978
-
-
Singh-Gasson, S.1
Green, R.D.2
Yue, Y.3
Nelson, C.4
Blattner, F.5
Sussman, M.R.6
Cerrina, F.7
-
24
-
-
0036852098
-
Gene expression analysis using oligonucleotide arrays produced by maskless photolithography
-
Nuwaysir, E.F., Huang, W., Albert, T.J., Singh, J., Nuwaysir, K., Pitas, A., Richmond, T., Gorski, T., Berg, J.P., Ballin, J., McCormick, M., Norton, J., Pollock, T., Sumwalt, T., Butcher, L., Porter, D., Molla, M., Hall, C., Blattner, F., Sussman,M.R.,Wallace, R.L.,Cerrina, F. and Green, R.D. (2002) Gene expression analysis using oligonucleotide arrays produced by maskless photolithography. Genome Research, 12 (11), 1749-1755.
-
(2002)
Genome Research
, vol.12
, Issue.11
, pp. 1749-1755
-
-
Nuwaysir, E.F.1
Huang, W.2
Albert, T.J.3
Singh, J.4
Nuwaysir, K.5
Pitas, A.6
Richmond, T.7
Gorski, T.8
Berg, J.P.9
Ballin, J.10
McCormick, M.11
Norton, J.12
Pollock, T.13
Sumwalt, T.14
Butcher, L.15
Porter, D.16
Molla, M.17
Hall, C.18
Blattner, F.19
Sussman, M.R.20
Wallace, R.L.21
Cerrina, F.22
Green, R.D.23
more..
-
25
-
-
0035072249
-
Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer
-
Hughes, T.R., Mao, M., Jones, A.R., Burchard, J., Marton, M.J., Shannon, K.W., Lefkowitz, S.M., Ziman, M., Schelter, J.M., Meyer, M.R., Kobayashi, S., Davis, C., Dai, H., He, Y.D., Stephaniants, S.B., Cavet, G., Walker, W.L., West, A., Coffey, E., Shoemaker, D.D., Stoughton, R., Blanchard, A.P., Friend, S.H. and Linsley, P.S. (2001) Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer. Nature Biotechnology, 19 (4), 342-347.
-
(2001)
Nature Biotechnology
, vol.19
, Issue.4
, pp. 342-347
-
-
Hughes, T.R.1
Mao, M.2
Jones, A.R.3
Burchard, J.4
Marton, M.J.5
Shannon, K.W.6
Lefkowitz, S.M.7
Ziman, M.8
Schelter, J.M.9
Meyer, M.R.10
Kobayashi, S.11
Davis, C.12
Dai, H.13
He, Y.D.14
Stephaniants, S.B.15
Cavet, G.16
Walker, W.L.17
West, A.18
Coffey, E.19
Shoemaker, D.D.20
Stoughton, R.21
Blanchard, A.P.22
Friend, S.H.23
Linsley, P.S.24
more..
-
26
-
-
0029852580
-
Use of a cDNA microarray to analyse gene expression patterns in human cancer
-
DeRisi, J., Penland, L., Brown, P.O., Bittner, M.L., Meltzer, P.S., Ray, M., Chen, Y., Su, Y.A. and Trent, J.M. (1996) Use of a cDNA microarray to analyse gene expression patterns in human cancer. Nature Genetics, 14 (4), 457-460.
-
(1996)
Nature Genetics
, vol.14
, Issue.4
, pp. 457-460
-
-
DeRisi, J.1
Penland, L.2
Brown, P.O.3
Bittner, M.L.4
Meltzer, P.S.5
Ray, M.6
Chen, Y.7
Su, Y.A.8
Trent, J.M.9
-
27
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi, J.L., Iyer, V.R. and Brown, P.O. (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science, 278 (5338), 680-686.
-
(1997)
Science
, vol.278
, Issue.5338
, pp. 680-686
-
-
DeRisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
28
-
-
0034616930
-
Functional discovery via a compendium of expression profiles
-
Hughes, T.R., Marton, M.J., Jones, A.R., Roberts, C.J., Stoughton, R., Armour, C.D., Bennett, H.A., Coffey, E., Dai, H., He, Y.D., Kidd, M.J., King, A.M., Meyer, M.R., Slade, D., Lum, P.Y., Stepaniants, S.B., Shoemaker, D.D., Gachotte, D., Chakraburtty, K., Simon, J., Bard, M. and Friend, S.H. (2000) Functional discovery via a compendium of expression profiles. Cell, 102 (1), 109-126.
-
(2000)
Cell
, vol.102
, Issue.1
, pp. 109-126
-
-
Hughes, T.R.1
Marton, M.J.2
Jones, A.R.3
Roberts, C.J.4
Stoughton, R.5
Armour, C.D.6
Bennett, H.A.7
Coffey, E.8
Dai, H.9
He, Y.D.10
Kidd, M.J.11
King, A.M.12
Meyer, M.R.13
Slade, D.14
Lum, P.Y.15
Stepaniants, S.B.16
Shoemaker, D.D.17
Gachotte, D.18
Chakraburtty, K.19
Simon, J.20
Bard, M.21
Friend, S.H.22
more..
-
29
-
-
0033569406
-
Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
-
Golub, T.R., Slonim, D.K., Tamayo, P., Huard, C., Gaasenbeek, M., Mesirov, J.P., Coller, H., Loh, M.L., Downing, J.R., Caligiuri, M.A., Bloomfield, C.D. and Lander, E.S. (1999) Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science, 286 (5439), 531-537.
-
(1999)
Science
, vol.286
, Issue.5439
, pp. 531-537
-
-
Golub, T.R.1
Slonim, D.K.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.P.6
Coller, H.7
Loh, M.L.8
Downing, J.R.9
Caligiuri, M.A.10
Bloomfield, C.D.11
Lander, E.S.12
-
30
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
Alizadeh, A.A., Eisen, M.B., Davis, R.E., Ma, C., Lossos, I.S., Rosenwald, A., Boldrick, J.C., Sabet, H., Tran, T., Yu, X., Powell, J.I., Yang, L.,Marti, G.E., Moore, T., Hudson, J. Jr, Lu, L., Lewis, D.B., Tibshirani, R., Sherlock, G., Chan,W.C., Greiner, T.C., Weisenburger, D.D., Armitage, J.O., Warnke, R., Levy, R., Wilson, W., Grever, M.R., Byrd, J.C., Botstein, D., Brown, P.O. and Staudt, L.M. (2000) Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature, 403 (6769), 503-511.
-
(2000)
Nature
, vol.403
, Issue.6769
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
Rosenwald, A.6
Boldrick, J.C.7
Sabet, H.8
Tran, T.9
Yu, X.10
Powell, J.I.11
Yang, L.12
Marti, G.E.13
Moore, T.14
Hudson Jr., J.15
Lu, L.16
Lewis, D.B.17
Tibshirani, R.18
Sherlock, G.19
Chan, W.C.20
Greiner, T.C.21
Weisenburger, D.D.22
Armitage, J.O.23
Warnke, R.24
Levy, R.25
Wilson, W.26
Grever, M.R.27
Byrd, J.C.28
Botstein, D.29
Brown, P.O.30
Staudt, L.M.31
more..
-
31
-
-
0032555671
-
Direct allelic variation scanning of the yeast genome
-
Winzeler, E.A., Richards, D.R., Conway, A.R., Goldstein, A.L., Kalman, S., McCullough, M.J., McCusker, J.H., Stevens, D.A., Wodicka, L., Lockhart, D.J. and Davis, R.W. (1998) Direct allelic variation scanning of the yeast genome. Science, 281 (5380), 1194-1197.
-
(1998)
Science
, vol.281
, Issue.5380
, pp. 1194-1197
-
-
Winzeler, E.A.1
Richards, D.R.2
Conway, A.R.3
Goldstein, A.L.4
Kalman, S.5
McCullough, M.J.6
McCusker, J.H.7
Stevens, D.A.8
Wodicka, L.9
Lockhart, D.J.10
Davis, R.W.11
-
32
-
-
34547092673
-
Evaluating the performance of commercial whole-genome marker sets for capturing common genetic variation
-
Mägi, R., Pfeufer, A., Nelis, M., Montpetit, A., Metspalu, A. and Remm, M. (2007) Evaluating the performance of commercial whole-genome marker sets for capturing common genetic variation. BMC Genomics, 118, 159.
-
(2007)
BMC Genomics
, vol.118
, pp. 159
-
-
Mägi, R.1
Pfeufer, A.2
Nelis, M.3
Montpetit, A.4
Metspalu, A.5
Remm, M.6
-
33
-
-
0033539681
-
Identification of eukaryotic mRNAs that are translated at reduced cap binding complex eIF4F concentrations using a cDNA microarray
-
Johannes, G., Carter, M.S., Eisen, M.B., Brown, P.O. and Sarnow, P. (1999) Identification of eukaryotic mRNAs that are translated at reduced cap binding complex eIF4F concentrations using a cDNA microarray. Proceedings of the National Academy of Sciences of the United States of America, 96 (23), 13118-131123.
-
(1999)
Proceedings of the National Academy of Sciences of the United States of America
, vol.96
, Issue.23
, pp. 13118-131123
-
-
Johannes, G.1
Carter, M.S.2
Eisen, M.B.3
Brown, P.O.4
Sarnow, P.5
-
34
-
-
0034644626
-
Plasma membrane compartmentalization in yeast by messenger RNA transport and a septin diffusion barrier
-
Takizawa, P.A., DeRisi, J.L., Wilhelm, J.E. and Vale, R.D. (2000) Plasma membrane compartmentalization in yeast by messenger RNA transport and a septin diffusion barrier. Science, 290 (5490), 341-344.
-
(2000)
Science
, vol.290
, Issue.5490
, pp. 341-344
-
-
Takizawa, P.A.1
DeRisi, J.L.2
Wilhelm, J.E.3
Vale, R.D.4
-
35
-
-
33847417585
-
P bodies and the control ofmRNAtranslation and degradation
-
Parker, R. and Sheth, U. (2007) P bodies and the control ofmRNAtranslation and degradation. Molecules and Cells, 25 (5), 635-646.
-
(2007)
Molecules and Cells
, vol.25
, Issue.5
, pp. 635-646
-
-
Parker, R.1
Sheth, U.2
-
36
-
-
0032823523
-
Genome-wide analysis of DNA copy-number changes using cDNA microarrays
-
Pollack, J.R., Perou, C.M., Alizadeh, A.A., Eisen, M.B., Pergamenschikov, A., Williams, C.F., Jeffrey, S.S., Botstein, D. and Brown, P.O. (1999) Genome-wide analysis of DNA copy-number changes using cDNA microarrays. Nature Genetics, 23 (1), 41-46.
-
(1999)
Nature Genetics
, vol.23
, Issue.1
, pp. 41-46
-
-
Pollack, J.R.1
Perou, C.M.2
Alizadeh, A.A.3
Eisen, M.B.4
Pergamenschikov, A.5
Williams, C.F.6
Jeffrey, S.S.7
Botstein, D.8
Brown, P.O.9
-
37
-
-
33644932610
-
Comprehensive copy number profiles of breast cancer cell model genomes
-
Shadeo, A. and Lam, W.L. (2006) Comprehensive copy number profiles of breast cancer cell model genomes. Breast Cancer Research, 8 (1), R9.
-
(2006)
Breast Cancer Research
, vol.8
, Issue.1
-
-
Shadeo, A.1
Lam, W.L.2
-
38
-
-
0034662998
-
Analysis of topoisomerase function in bacterial replication fork movement: use of DNA microarrays
-
Khodursky, A.B., Peter, B.J., Schmid, M.B., DeRisi, J., Botstein, D., Brown, P.O. and Cozzarelli, N.R. (2000) Analysis of topoisomerase function in bacterial replication fork movement: use of DNA microarrays. Proceedings of the National Academy of Sciences of the United States of America, 97 (17), 9419-9424.
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.17
, pp. 9419-9424
-
-
Khodursky, A.B.1
Peter, B.J.2
Schmid, M.B.3
DeRisi, J.4
Botstein, D.5
Brown, P.O.6
Cozzarelli, N.R.7
-
39
-
-
19744383900
-
Detection and discovery of RNA modifications using microarrays
-
Hiley, S.L., Jackman, J., Babak, T., Trochesset, M., Morris, Q.D., Phizicky, E. and Hughes, T.R. (2005) Detection and discovery of RNA modifications using microarrays. Nucleic Acids Research, 733 (1), e2.
-
(2005)
Nucleic Acids Research
, vol.733
, Issue.1
-
-
Hiley, S.L.1
Jackman, J.2
Babak, T.3
Trochesset, M.4
Morris, Q.D.5
Phizicky, E.6
Hughes, T.R.7
-
40
-
-
33644844520
-
Microarray technology: beyond transcript profiling and genotype analysis
-
Hoheisel, J.D. (2006) Microarray technology: beyond transcript profiling and genotype analysis. Nature Reviews Genetics, 7 (3), 200-210.
-
(2006)
Nature Reviews Genetics
, vol.7
, Issue.3
, pp. 200-210
-
-
Hoheisel, J.D.1
-
41
-
-
8644232564
-
Progress and challenges in profiling the dynamics of chromatin and transcription factor binding with DNA microarrays
-
Hanlon, S.E. and Lieb, J.D. (2004) Progress and challenges in profiling the dynamics of chromatin and transcription factor binding with DNA microarrays. Current Opinion in Genetics and Development, 14 (6), 697-705.
-
(2004)
Current Opinion in Genetics and Development
, vol.14
, Issue.6
, pp. 697-705
-
-
Hanlon, S.E.1
Lieb, J.D.2
-
42
-
-
1242316281
-
ChIPchip: considerations for the design, analysis, and application of genomewide chromatin immunoprecipitation experiments
-
Buck, M.J. and Lieb, J.D. (2004) ChIPchip: considerations for the design, analysis, and application of genomewide chromatin immunoprecipitation experiments. Genomics, 83 (3), 349-360.
-
(2004)
Genomics
, vol.83
, Issue.3
, pp. 349-360
-
-
Buck, M.J.1
Lieb, J.D.2
-
43
-
-
33746864004
-
ChIP-chip comes of age for genome-wide functional analysis
-
Wu, J., Smith, L.T., Plass, C. and Huang, T.H. (2006) ChIP-chip comes of age for genome-wide functional analysis. Cancer Research, 66 (14), 6899-6902.
-
(2006)
Cancer Research
, vol.66
, Issue.14
, pp. 6899-6902
-
-
Wu, J.1
Smith, L.T.2
Plass, C.3
Huang, T.H.4
-
44
-
-
0034704248
-
Genome-wide location and function of DNA binding proteins
-
Ren, B., Robert, F., Wyrick, J.J., Aparicio, O., Jennings, E.G., Simon, I., Zeitlinger, J., Schreiber, J., Hannett, N., Kanin, E., Volkert, T.L., Wilson, C.J., Bell, S.P. and Young, R.A. (2000) Genome-wide location and function of DNA binding proteins. Science, 290 (5500), 2306-2309.
-
(2000)
Science
, vol.290
, Issue.5500
, pp. 2306-2309
-
-
Ren, B.1
Robert, F.2
Wyrick, J.J.3
Aparicio, O.4
Jennings, E.G.5
Simon, I.6
Zeitlinger, J.7
Schreiber, J.8
Hannett, N.9
Kanin, E.10
Volkert, T.L.11
Wilson, C.J.12
Bell, S.P.13
Young, R.A.14
-
45
-
-
19344366459
-
Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae
-
Glynn, E.F., Megee, P.C., Yu, H.G., Mistrot, C., Unal, E., Koshland, D.E., DeRisi, J.L. and Gerton, J.L. (2004) Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae. PLoS Biology, 2 (9), E259.
-
(2004)
PLoS Biology
, vol.2
, Issue.9
-
-
Glynn, E.F.1
Megee, P.C.2
Yu, H.G.3
Mistrot, C.4
Unal, E.5
Koshland, D.E.6
DeRisi, J.L.7
Gerton, J.L.8
-
46
-
-
2642570305
-
The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote
-
Schübeler, D., MacAlpine, D.M., Scalzo, D., Wirbelauer, C., Kooperberg, C., van Leeuwen, F., Gottschling, D.E., O'Neill, L.P., Turner, B.M., Delrow, J., Bell, S.P. and Groudine, M. (2004) The histone modification pattern of active genes revealed through genome-wide chromatin analysis of a higher eukaryote. Genes and Development, 18 (11), 1263-1271.
-
(2004)
Genes and Development
, vol.18
, Issue.11
, pp. 1263-1271
-
-
Schübeler, D.1
MacAlpine, D.M.2
Scalzo, D.3
Wirbelauer, C.4
Kooperberg, C.5
Van Leeuwen, F.6
Gottschling, D.E.7
O'Neill, L.P.8
Turner, B.M.9
Delrow, J.10
Bell, S.P.11
Groudine, M.12
-
47
-
-
0037174671
-
Transcriptional regulatory networks in Saccharomyces cerevisiae
-
Lee, T.I., Rinaldi, N.J., Robert, F., Odom, D.T., Bar-Joseph, Z., Gerber, G.K., Hannett, N.M., Harbison, C.T., Thompson, C.M., Simon, I., Zeitlinger, J., Jennings, E.G.,Murray, H.L., Gordon, D.B., Ren, B., Wyrick, J.J., Tagne, J.B., Volkert, T.L., Fraenkel, E., Gifford, D.K. and Young, R.A. (2002) Transcriptional regulatory networks in Saccharomyces cerevisiae. Science, 298 (5594), 799-804.
-
(2002)
Science
, vol.298
, Issue.5594
, pp. 799-804
-
-
Lee, T.I.1
Rinaldi, N.J.2
Robert, F.3
Odom, D.T.4
Bar-Joseph, Z.5
Gerber, G.K.6
Hannett, N.M.7
Harbison, C.T.8
Thompson, C.M.9
Simon, I.10
Zeitlinger, J.11
Jennings, E.G.12
Murray, H.L.13
Gordon, D.B.14
Ren, B.15
Wyrick, J.J.16
Tagne, J.B.17
Volkert, T.L.18
Fraenkel, E.19
Gifford, D.K.20
Young, R.A.21
more..
-
48
-
-
25144525014
-
Core transcriptional regulatory circuitry in human embryonic stem cells
-
Boyer, L.A., Lee, T.I., Cole, M.F., Johnstone, S.E., Levine, S.S., Zucker, J.P., Guenther, M.G., Kumar, R.M., Murray, H.L., Jenner, R.G., Gifford, D.K., Melton, D.A., Jaenisch, R. and Young, R.A. (2005) Core transcriptional regulatory circuitry in human embryonic stem cells. Cell, 122 (6), 947-956.
-
(2005)
Cell
, vol.122
, Issue.6
, pp. 947-956
-
-
Boyer, L.A.1
Lee, T.I.2
Cole, M.F.3
Johnstone, S.E.4
Levine, S.S.5
Zucker, J.P.6
Guenther, M.G.7
Kumar, R.M.8
Murray, H.L.9
Jenner, R.G.10
Gifford, D.K.11
Melton, D.A.12
Jaenisch, R.13
Young, R.A.14
-
49
-
-
26444508841
-
Single-nucleosome mapping of histone modifications in S. cerevisiae
-
Liu, C.L., Kaplan, T., Kim, M., Buratowski, S., Schreiber, S.L., Friedman, N. and Rando, O.J. (2005) Single-nucleosome mapping of histone modifications in S. cerevisiae. PLoS Biology, 3 (10), e328.
-
(2005)
PLoS Biology
, vol.3
, Issue.10
-
-
Liu, C.L.1
Kaplan, T.2
Kim, M.3
Buratowski, S.4
Schreiber, S.L.5
Friedman, N.6
Rando, O.J.7
-
50
-
-
12344291073
-
Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments
-
Johnson, J.M., Edwards, S., Shoemaker, D. and Schadt, E.E. (2005) Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments. Trends in Genetics, 21 (2), 93-102. Review.
-
(2005)
Trends in Genetics
, vol.21
, Issue.2
, pp. 93-102
-
-
Johnson, J.M.1
Edwards, S.2
Shoemaker, D.3
Schadt, E.E.4
-
51
-
-
33645785104
-
A high-resolution map of transcription in the yeast genome
-
David, L., Huber, W., Granovskaia, M., Toedling, J., Palm, C.J., Bofkin, L., Jones, T., Davis, R.W. and Steinmetz, L.M. (2006) A high-resolution map of transcription in the yeast genome. Proceedings of the National Academy of Sciences of the United States of America, 103 (14), 5320-5325.
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.14
, pp. 5320-5325
-
-
David, L.1
Huber, W.2
Granovskaia, M.3
Toedling, J.4
Palm, C.J.5
Bofkin, L.6
Jones, T.7
Davis, R.W.8
Steinmetz, L.M.9
-
52
-
-
7444260846
-
The ENCODE (ENCyclopedia of DNA Elements) Project
-
ENCODE Project Consortium
-
ENCODE Project Consortium,( (2004) The ENCODE (ENCyclopedia of DNA Elements) Project. Science, 306, 636-640.
-
(2004)
Science
, vol.306
, pp. 636-640
-
-
-
53
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
ENCODE Project Consortium
-
ENCODE Project Consortium,( (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature, 447, 799-816.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
-
54
-
-
0027317976
-
The EST express gathers speed
-
Davies, K. (1993) The EST express gathers speed. Nature, 364, 554.
-
(1993)
Nature
, vol.364
, pp. 554
-
-
Davies, K.1
-
55
-
-
0035425022
-
Microarraybased analysis of early development in Xenopus laevis
-
Altmann, C.R., Bell, E., Sczyrba, A., Pun, J., Bekiranov, S., Gaasterland, T. and Brivanlou, A.H. (2001) Microarraybased analysis of early development in Xenopus laevis. Developmental Biology, 236 (1), 64-75.
-
(2001)
Developmental Biology
, vol.236
, Issue.1
, pp. 64-75
-
-
Altmann, C.R.1
Bell, E.2
Sczyrba, A.3
Pun, J.4
Bekiranov, S.5
Gaasterland, T.6
Brivanlou, A.H.7
-
56
-
-
0037632910
-
Identifying phasespecific genes in the fungal pathogen Histoplasma capsulatum using a genomic shotgun microarray
-
Hwang, L., Hocking-Murray, D., Bahrami, A.K., Andersson, M., Rine, J. and Sil, A. (2003) Identifying phasespecific genes in the fungal pathogen Histoplasma capsulatum using a genomic shotgun microarray. Molecular Biology of the Cell, 14 (6), 2314-2326.
-
(2003)
Molecular Biology of the Cell
, vol.14
, Issue.6
, pp. 2314-2326
-
-
Hwang, L.1
Hocking-Murray, D.2
Bahrami, A.K.3
Andersson, M.4
Rine, J.5
Sil, A.6
-
57
-
-
0035755439
-
Microarray probe selection strategies
-
Tomiuk, S. and Hofmann, K. (2001) Microarray probe selection strategies. Briefings in Bioinformatics, 2 (4), 329-340.
-
(2001)
Briefings in Bioinformatics
, vol.2
, Issue.4
, pp. 329-340
-
-
Tomiuk, S.1
Hofmann, K.2
-
58
-
-
84889630051
-
Covalent attachment of sequence optimized PCR products and oligos for DNA microarrays
-
Abstract TIGR Conference
-
Chen, M., ten Bosch, J., Beckman, K., Saljoughi, S., Seidel, C., Tuason, N., Larka, L., Lam, H., Sinibaldi, R. and Saul, R. (1999) Covalent attachment of sequence optimized PCR products and oligos for DNA microarrays. Abstract TIGR Conference.
-
(1999)
-
-
Chen, M.1
Ten Bosch, J.2
Beckman, K.3
Saljoughi, S.4
Seidel, C.5
Tuason, N.6
Larka, L.7
Lam, H.8
Sinibaldi, R.9
Saul, R.10
-
59
-
-
0035863927
-
Assessment of clone identity and sequence fidelity for 1189 IMAGE cDNA clones
-
Halgren, R.G., Fielden, M.R., Fong, C.J. and Zacharewski, T.R. (2001) Assessment of clone identity and sequence fidelity for 1189 IMAGE cDNA clones. Nucleic Acids Research, 29 (2), 582-588.
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.2
, pp. 582-588
-
-
Halgren, R.G.1
Fielden, M.R.2
Fong, C.J.3
Zacharewski, T.R.4
-
60
-
-
0035228516
-
Gene expression analysis on mediumdensity oligonucleotide arrays
-
Sinibaldi, R., O'Connell, C., Seidel, C. and Rodriguez, H. (2001) Gene expression analysis on mediumdensity oligonucleotide arrays. Methods in Molecular Biology, 170, 211-222.
-
(2001)
Methods in Molecular Biology
, vol.170
, pp. 211-222
-
-
Sinibaldi, R.1
O'Connell, C.2
Seidel, C.3
Rodriguez, H.4
-
61
-
-
0034669668
-
Assessment of the sensitivity and specificity of oligonucleotide (50 mer) microarrays
-
Kane, M.D., Jatkoe, T.A., Stumpf, C.R., Lu, J., Thomas, J.D. and Madore, S.J. (2000) Assessment of the sensitivity and specificity of oligonucleotide (50 mer) microarrays. Nucleic Acids Research, 28 (22), 4552-4557.
-
(2000)
Nucleic Acids Research
, vol.28
, Issue.22
, pp. 4552-4557
-
-
Kane, M.D.1
Jatkoe, T.A.2
Stumpf, C.R.3
Lu, J.4
Thomas, J.D.5
Madore, S.J.6
-
62
-
-
3042855581
-
Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression
-
Chou, C.C., Chen, C.H., Lee, T.T. and Peck, K. (2004) Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression. Nucleic Acids Research, 12 (32), e99.
-
(2004)
Nucleic Acids Research
, vol.12
, Issue.32
-
-
Chou, C.C.1
Chen, C.H.2
Lee, T.T.3
Peck, K.4
-
63
-
-
1342303735
-
Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a longoligonucleotide microarray
-
Bozdech, Z., Zhu, J., Joachimiak, M.P., Cohen, F.E., Pulliam, B. and DeRisi, J.L. (2003) Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a longoligonucleotide microarray. Genome Biology, 4 (2), R9.
-
(2003)
Genome Biology
, vol.4
, Issue.2
-
-
Bozdech, Z.1
Zhu, J.2
Joachimiak, M.P.3
Cohen, F.E.4
Pulliam, B.5
DeRisi, J.L.6
-
64
-
-
33747839165
-
Microarray oligonucleotide probes
-
Kreil, D.P., Russell, R.R. and Russell, S. (2006) Microarray oligonucleotide probes. Methods in Enzymology, 410, 73-98.
-
(2006)
Methods in Enzymology
, vol.410
, pp. 73-98
-
-
Kreil, D.P.1
Russell, R.R.2
Russell, S.3
-
65
-
-
38449094762
-
Oligonucleotide microarrays: widely applied poorly understood
-
Pozhitkov, A.E., Tautz, D. and Noble, P.A. (2007) Oligonucleotide microarrays: widely applied poorly understood. Briefings in Functional Genomics and Proteomics, 6 (2), 141-148.
-
(2007)
Briefings in Functional Genomics and Proteomics
, vol.6
, Issue.2
, pp. 141-148
-
-
Pozhitkov, A.E.1
Tautz, D.2
Noble, P.A.3
-
66
-
-
34547840248
-
Optimized design and assessment of whole genome tiling arrays
-
Graf, S., Nielsen, F.G., Kurtz, S., Huynen, M.A., Birney, E., Stunnenberg, H. and Flicek, P. (2007) Optimized design and assessment of whole genome tiling arrays. Bioinformatics, 23 (13), i195-i204.
-
(2007)
Bioinformatics
, vol.23
, Issue.13
-
-
Graf, S.1
Nielsen, F.G.2
Kurtz, S.3
Huynen, M.A.4
Birney, E.5
Stunnenberg, H.6
Flicek, P.7
-
67
-
-
0041336612
-
Effects of atmospheric ozone on microarray data quality
-
Fare, T.L., Coffey, E.M., Dai, H., He, Y.D., Kessler, D.A., Kilian, K.A., Koch, J.E., LeProust, E., Marton, M.J., Meyer, M.R., Stoughton, R.B., Tokiwa, G.Y. and Wang, Y. (2003) Effects of atmospheric ozone on microarray data quality. Analytical Chemistry, 75 (17), 4672-4675.
-
(2003)
Analytical Chemistry
, vol.75
, Issue.17
, pp. 4672-4675
-
-
Fare, T.L.1
Coffey, E.M.2
Dai, H.3
He, Y.D.4
Kessler, D.A.5
Kilian, K.A.6
Koch, J.E.7
LeProust, E.8
Marton, M.J.9
Meyer, M.R.10
Stoughton, R.B.11
Tokiwa, G.Y.12
Wang, Y.13
-
68
-
-
0036898577
-
Microarray data normalization and transformation
-
Review
-
Quackenbush, J. (2002) Microarray data normalization and transformation. Nature Genetics, 32 (Suppl.), 496-501. Review.
-
(2002)
Nature Genetics
, vol.32
, Issue.SUPPL
, pp. 496-501
-
-
Quackenbush, J.1
-
69
-
-
1342294092
-
Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
-
Yang, Y.H., Dudoit, S., Luu, P., Lin, D.M., Peng, V., Ngai, J. and Speed, T.P. (2002) Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Research, 30 (4), e15.
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.4
-
-
Yang, Y.H.1
Dudoit, S.2
Luu, P.3
Lin, D.M.4
Peng, V.5
Ngai, J.6
Speed, T.P.7
-
70
-
-
0036376993
-
Statistical methods for identifying genes with differential expression in replicated cDNA experiments
-
Dudoit, S., Yang, Y.H., Callow, M. and Speed, T. (2002) Statistical methods for identifying genes with differential expression in replicated cDNA experiments. Statistica Sinica, 12, 111-139.
-
(2002)
Statistica Sinica
, vol.12
, pp. 111-139
-
-
Dudoit, S.1
Yang, Y.H.2
Callow, M.3
Speed, T.4
-
71
-
-
34250182087
-
Normalization of two-channel microarrays accounting for experimental design and intensity-dependent relationships
-
Dabney, A.R. and Storey, J.D. (2007) Normalization of two-channel microarrays accounting for experimental design and intensity-dependent relationships. Genome Biology, 8 (3), R44.
-
(2007)
Genome Biology
, vol.8
, Issue.3
-
-
Dabney, A.R.1
Storey, J.D.2
-
72
-
-
0042594501
-
New normalization methods for cDNA microarray data
-
Wilson, D.L., Buckley, M.J., Helliwell, C.A. and Wilson, I.W. (2003) New normalization methods for cDNA microarray data. Bioinformatics, 19 (11), 1325-1332.
-
(2003)
Bioinformatics
, vol.19
, Issue.11
, pp. 1325-1332
-
-
Wilson, D.L.1
Buckley, M.J.2
Helliwell, C.A.3
Wilson, I.W.4
-
73
-
-
10244279250
-
Normalization of microarray data using a spatial mixed model analysis which includes splines
-
Baird, D., Johnstone, P. and Wilson, T. (2004) Normalization of microarray data using a spatial mixed model analysis which includes splines. Bioinformatics, 20 (17), 3196-3205.
-
(2004)
Bioinformatics
, vol.20
, Issue.17
, pp. 3196-3205
-
-
Baird, D.1
Johnstone, P.2
Wilson, T.3
-
74
-
-
2942630482
-
Normalization in Statistics for Microarrays: Design, Analysis and Inference
-
John Wiley & Sons, Ltd., Chapter 4
-
Wit, E. and McClure, J. (2004) Normalization in Statistics for Microarrays: Design, Analysis and Inference, John Wiley & Sons, Ltd., Chapter 4.
-
(2004)
-
-
Wit, E.1
McClure, J.2
-
75
-
-
0035875553
-
Issues in cDNA microarray analysis: quality filtering channel normalization, models of variations and assessment of gene effects
-
Tseng, G.C., Oh, M.K., Rohlin, L., Liao, J.C. and Wong, W.H. (2001) Issues in cDNA microarray analysis: quality filtering channel normalization, models of variations and assessment of gene effects. Nucleic Acids Research, 29 (12), 2549-2557.
-
(2001)
Nucleic Acids Research
, vol.29
, Issue.12
, pp. 2549-2557
-
-
Tseng, G.C.1
Oh, M.K.2
Rohlin, L.3
Liao, J.C.4
Wong, W.H.5
-
76
-
-
34147174227
-
Normalization of boutique two-color microarrays with a high proportion of differentially expressed probes
-
Oshlack, A., Emslie, D., Corcoran, L.M. and Smyth, G.K. (2007) Normalization of boutique two-color microarrays with a high proportion of differentially expressed probes. Genome Biology, 8 (1), R2.
-
(2007)
Genome Biology
, vol.8
, Issue.1
-
-
Oshlack, A.1
Emslie, D.2
Corcoran, L.M.3
Smyth, G.K.4
-
77
-
-
34249730556
-
Assessing the need for sequence-based normalization in tiling microarray experiments
-
Royce, T.E., Rozowsky, J.S. and Gerstein, M.B. (2007) Assessing the need for sequence-based normalization in tiling microarray experiments. Bioinformatics, 23 (8), 988-997.
-
(2007)
Bioinformatics
, vol.23
, Issue.8
, pp. 988-997
-
-
Royce, T.E.1
Rozowsky, J.S.2
Gerstein, M.B.3
-
78
-
-
0142121516
-
Exploration normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry, R.A., Hobbs, B., Collin, F., Beazer-Barclay, Y.D., Antonellis, K.J., Scherf, U. and Speed, T.P. (2003) Exploration normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics, 4 (2), 249-264.
-
(2003)
Biostatistics
, vol.4
, Issue.2
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
80
-
-
2442601878
-
A Model Based Background Adjustment for Oligonucleotide Expression Arrays
-
Johns Hopkins University Department of Biostatistics Working Papers. Working Paper 1
-
Wu, Z., Irizarry, R.A., Gentleman, R., Francisco, M.M. and Spencer, F. (2004) A Model Based Background Adjustment for Oligonucleotide Expression Arrays. Johns Hopkins University Department of Biostatistics Working Papers. Working Paper 1.
-
(2004)
-
-
Wu, Z.1
Irizarry, R.A.2
Gentleman, R.3
Francisco, M.M.4
Spencer, F.5
-
81
-
-
32144437945
-
Evaluation of methods for oligonucleotide array data via quantitative real-time PCR
-
Qin, L.X., Beyer, R.P., Hudson, F.N., Linford, N.J., Morris, D.E. and Kerr, K.F. (2006) Evaluation of methods for oligonucleotide array data via quantitative real-time PCR. BMC Bioinformatics, 177, 23.
-
(2006)
BMC Bioinformatics
, vol.177
, pp. 23
-
-
Qin, L.X.1
Beyer, R.P.2
Hudson, F.N.3
Linford, N.J.4
Morris, D.E.5
Kerr, K.F.6
-
82
-
-
27744579507
-
An expression index for Affymetrix GeneChips based on the generalized logarithm
-
Zhou, L. and Rocke, D.M. (2005) An expression index for Affymetrix GeneChips based on the generalized logarithm. Bioinformatics, 21 (21), 3983-3989.
-
(2005)
Bioinformatics
, vol.21
, Issue.21
, pp. 3983-3989
-
-
Zhou, L.1
Rocke, D.M.2
-
83
-
-
22144461265
-
Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset
-
Choe, S.E., Boutros, M., Michelson, A.M., Church, G.M. and Halfon, M.S. (2005) Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset. Genome Biology, 6 (2), R16.
-
(2005)
Genome Biology
, vol.6
, Issue.2
-
-
Choe, S.E.1
Boutros, M.2
Michelson, A.M.3
Church, G.M.4
Halfon, M.S.5
-
84
-
-
33745023798
-
A reanalysis of a published Affymetrix GeneChip control dataset
-
Dabney, A.R. and Storey, J.D. (2006) A reanalysis of a published Affymetrix GeneChip control dataset. Genome Biology, 7 (3), 401.
-
(2006)
Genome Biology
, vol.7
, Issue.3
, pp. 401
-
-
Dabney, A.R.1
Storey, J.D.2
-
85
-
-
0037177855
-
Transcript abundance in yeast varies over six orders of magnitude
-
Holland, M.J. (2002) Transcript abundance in yeast varies over six orders of magnitude. Journal of Biological Chemistry, 277 (17), 14363-14366.
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.17
, pp. 14363-14366
-
-
Holland, M.J.1
-
86
-
-
0017286579
-
Analysis of the complexity and diversity of mRNA from chicken liver and oviduct
-
Axel, R., Feigelson, P. and Schutz, G. (1976) Analysis of the complexity and diversity of mRNA from chicken liver and oviduct. Cell, 7 (2), 247-254.
-
(1976)
Cell
, vol.7
, Issue.2
, pp. 247-254
-
-
Axel, R.1
Feigelson, P.2
Schutz, G.3
-
87
-
-
0016345602
-
Three abundance classes in HeLa cell messenger RNA
-
Bishop, J.O., Morton, J.G., Rosbash, M. and Richardson, M. (1974) Three abundance classes in HeLa cell messenger RNA. Nature, 250 (463), 199-204.
-
(1974)
Nature
, vol.250
, Issue.463
, pp. 199-204
-
-
Bishop, J.O.1
Morton, J.G.2
Rosbash, M.3
Richardson, M.4
-
88
-
-
2442571046
-
Microarray results improve significantly as hybridization approaches equilibrium
-
Sartor, M., Schwanekamp, J., Halbleib, D., Mohamed, I., Karyala, S., Medvedovic, M. and Tomlinson, C.R. (2004) Microarray results improve significantly as hybridization approaches equilibrium. Biotechniques, 36 (5), 790-796.
-
(2004)
Biotechniques
, vol.36
, Issue.5
, pp. 790-796
-
-
Sartor, M.1
Schwanekamp, J.2
Halbleib, D.3
Mohamed, I.4
Karyala, S.5
Medvedovic, M.6
Tomlinson, C.R.7
-
89
-
-
0141995468
-
Optimizing stringency for expression microarrays
-
Korkola, J.E., Estep, A.L., Pejavar, S., DeVries, S., Jensen, R. and Waldman, F.M. (2003) Optimizing stringency for expression microarrays. Biotechniques, 35 (4), 828-835.
-
(2003)
Biotechniques
, vol.35
, Issue.4
, pp. 828-835
-
-
Korkola, J.E.1
Estep, A.L.2
Pejavar, S.3
DeVries, S.4
Jensen, R.5
Waldman, F.M.6
-
90
-
-
33645808222
-
Large scale realtime PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays
-
Wang, Y., Barbacioru, C., Hyland, F., Xiao, W., Hunkapiller, K.L., Blake, J., Chan, F., Gonzalez, C., Zhang, L. and Samaha, R.R. (2006) Large scale realtime PCR validation on gene expression measurements from two commercial long-oligonucleotide microarrays. BMC Genomics, 7, 59.
-
(2006)
BMC Genomics
, vol.7
, pp. 59
-
-
Wang, Y.1
Barbacioru, C.2
Hyland, F.3
Xiao, W.4
Hunkapiller, K.L.5
Blake, J.6
Chan, F.7
Gonzalez, C.8
Zhang, L.9
Samaha, R.R.10
-
91
-
-
33744804832
-
Comparison of the latest commercial short and long oligonucleotide microarray technologies
-
de Reynies, A., Geromin, D., Cayuela, J.M., Petel, F., Dessen, P., Sigaux, F. and Rickman, D.S. (2006) Comparison of the latest commercial short and long oligonucleotide microarray technologies. BMC Genomics, 7, 51.
-
(2006)
BMC Genomics
, vol.7
, pp. 51
-
-
De Reynies, A.1
Geromin, D.2
Cayuela, J.M.3
Petel, F.4
Dessen, P.5
Sigaux, F.6
Rickman, D.S.7
-
92
-
-
23644453736
-
Three microarray platforms: an analysis of their concordance in profiling gene expression
-
Petersen, D., Chandramouli, G.V., Geoghegan, J., Hilburn, J., Paarlberg, J., Kim, C.H., Munroe, D., Gangi, L., Han, J., Puri, R., Staudt, L., Weinstein, J., Barrett, J.C., Green, J. and Kawasaki, E.S. (2005) Three microarray platforms: an analysis of their concordance in profiling gene expression. BMC Genomics, 56 (1), 63.
-
(2005)
BMC Genomics
, vol.56
, Issue.1
, pp. 63
-
-
Petersen, D.1
Chandramouli, G.V.2
Geoghegan, J.3
Hilburn, J.4
Paarlberg, J.5
Kim, C.H.6
Munroe, D.7
Gangi, L.8
Han, J.9
Puri, R.10
Staudt, L.11
Weinstein, J.12
Barrett, J.C.13
Green, J.14
Kawasaki, E.S.15
-
93
-
-
4344660619
-
Comprehensive comparison of six microarray technologies
-
Yauk, C.L., Berndt, M.L., Williams, A. and Douglas, G.R. (2004) Comprehensive comparison of six microarray technologies. Nucleic Acids Research, 32 (15), e124.
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.15
-
-
Yauk, C.L.1
Berndt, M.L.2
Williams, A.3
Douglas, G.R.4
-
94
-
-
31444431754
-
Reliability and reproducibility issues in DNA microarray measurements
-
Draghici, S., Khatri, P., Eklund, A.C. and Szallasi, Z. (2005) Reliability and reproducibility issues in DNA microarray measurements. Trends in Genetics, 22 (2), 101-109. Review.
-
(2005)
Trends in Genetics
, vol.22
, Issue.2
, pp. 101-109
-
-
Draghici, S.1
Khatri, P.2
Eklund, A.C.3
Szallasi, Z.4
-
95
-
-
0002922661
-
Microarray results: how accurate are they?
-
Kothapalli, R., Yoder, S.J., Mane, S. and Loughran, T.P. (2002) Microarray results: how accurate are they? BMC Bioinformatics, 233, 22.
-
(2002)
BMC Bioinformatics
, vol.233
, pp. 22
-
-
Kothapalli, R.1
Yoder, S.J.2
Mane, S.3
Loughran, T.P.4
-
96
-
-
0141905890
-
Evaluationofgene expression measurements from commercial microarray platforms
-
Tan, P.K., Downey, T.J., Spitznagel, E.L., Jr, Xu, P., Fu, D., Dimitrov, D.S., Lempicki, R.A., Raaka, B.M. and Cam, M.C.(2003)Evaluationofgene expression measurements from commercial microarray platforms. Nucleic Acids Research, 31 (19), 5676-5684.
-
(2003)
Nucleic Acids Research
, vol.31
, Issue.19
, pp. 5676-5684
-
-
Tan, P.K.1
Downey, T.J.2
Spitznagel Jr, E.L.3
Xu, P.4
Fu, D.5
Dimitrov, D.S.6
Lempicki, R.A.7
Raaka, B.M.8
Cam, M.C.9
-
97
-
-
33748491718
-
Performance comparison of onecolor and two-color platforms within the MicroArray Quality Control (MAQC) project
-
Patterson, T.A., Lobenhofer, E.K.,Fulmer-Smentek, S.B., Collins, P.J., Chu, T.M., Bao,W., Fang, H., Kawasaki, E.S.,Hager, J.,Tikhonova, I.R.,Walker, S.J.,Zhang, L., Hurban, P., de Longueville, F., Fuscoe, J.C., Tong,W., Shi, L. andWolfinger, R.D. (2006) Performance comparison of onecolor and two-color platforms within the MicroArray Quality Control (MAQC) project. Nature Biotechnology, 24 (9), 1140-1150.
-
(2006)
Nature Biotechnology
, vol.24
, Issue.9
, pp. 1140-1150
-
-
Patterson, T.A.1
Lobenhofer, E.K.2
Fulmer-Smentek, S.B.3
Collins, P.J.4
Chu, T.M.5
Bao, W.6
Fang, H.7
Kawasaki, E.S.8
Hager, J.9
Tikhonova, I.R.10
Walker, S.J.11
Zhang, L.12
Hurban, P.13
De Longueville, F.14
Fuscoe, J.C.15
Tong, W.16
Shi, L.17
Wolfinger, R.D.18
-
98
-
-
0035221240
-
Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions
-
Haab, B.B., Dunham, M.J. Brown, P.O., (2001) Protein microarrays for highly parallel detection and quantitation of specific proteins and antibodies in complex solutions. Genome Biology, 2 (2), 1-13.
-
(2001)
Genome Biology
, vol.2
, Issue.2
, pp. 1-13
-
-
Haab, B.B.1
Dunham, M.J.2
Brown, P.O.3
-
99
-
-
20044366920
-
Cell microarrays and RNA interference chip away at gene function
-
Review
-
Wheeler, D.B., Carpenter, A.E. and Sabatini, D.M. (2005) Cell microarrays and RNA interference chip away at gene function. Nature Genetics, 37 (Suppl.), S25-S30. Review.
-
(2005)
Nature Genetics
, vol.37
, Issue.SUPPL
-
-
Wheeler, D.B.1
Carpenter, A.E.2
Sabatini, D.M.3
-
100
-
-
33646136679
-
Harnessing natural diversity to probe metabolic pathways
-
Homann, O.R., Cai, H., Becker, J.M. and Lindquist, S.L. (2005) Harnessing natural diversity to probe metabolic pathways. PLoS Genetics, 1 (6), e80.
-
(2005)
PLoS Genetics
, vol.1
, Issue.6
-
-
Homann, O.R.1
Cai, H.2
Becker, J.M.3
Lindquist, S.L.4
-
101
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies, M., Egholm, M., Altman, W.E., Attiya, S., Bader, J.S., Bemben, L.A., Berka, J., Braverman, M.S., Chen, Y.J., Chen, Z., Dewell, S.B., Du, L., Fierro, J.M., Gomes, X.V., Godwin, B.C., He, W., Helgesen, S., Ho, C.H., Irzyk, G.P., Jando, S.C., Alenquer, M.L., Jarvie, T.P., Jirage, K.B., Kim, J.B., Knight, J.R., Lanza, J.R., Leamon, J.H., Lefkowitz, S.M., Lei, M., Li, J., Lohman, K.L., Lu, H., Makhijani, V.B., McDade, K.E., McKenna, M.P., Myers, E.W., Nickerson, E., Nobile, J.R., Plant, R., Puc, B.P., Ronan, M.T., Roth, G.T., Sarkis, G.J., Simons, J.F., Simpson, J.W., Srinivasan, M., Tartaro, K.R., Tomasz, A., Vogt, K.A., Volkmer, G.A., Wang, S.H., Wang, Y., Weiner, M.P., Yu, P., Begley, R.F. and Rothberg, J.M. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature, 437 (7057), 376-380.
-
(2005)
Nature
, vol.437
, Issue.7057
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.J.9
Chen, Z.10
Dewell, S.B.11
Du, L.12
Fierro, J.M.13
Gomes, X.V.14
Godwin, B.C.15
He, W.16
Helgesen, S.17
Ho, C.H.18
Irzyk, G.P.19
Jando, S.C.20
Alenquer, M.L.21
Jarvie, T.P.22
Jirage, K.B.23
Kim, J.B.24
Knight, J.R.25
Lanza, J.R.26
Leamon, J.H.27
Lefkowitz, S.M.28
Lei, M.29
Li, J.30
Lohman, K.L.31
Lu, H.32
Makhijani, V.B.33
McDade, K.E.34
McKenna, M.P.35
Myers, E.W.36
Nickerson, E.37
Nobile, J.R.38
Plant, R.39
Puc, B.P.40
Ronan, M.T.41
Roth, G.T.42
Sarkis, G.J.43
Simons, J.F.44
Simpson, J.W.45
Srinivasan, M.46
Tartaro, K.R.47
Tomasz, A.48
Vogt, K.A.49
Volkmer, G.A.50
Wang, S.H.51
Wang, Y.52
Weiner, M.P.53
Yu, P.54
Begley, R.F.55
Rothberg, J.M.56
more..
-
102
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
Barski, A., Cuddapah, S., Cui, K., Roh, T.Y., Schones, D.E., Wang, Z., Wei, G., Chepelev, I. and Zhao, K. (2007) High-resolution profiling of histone methylations in the human genome. Cell, 129 (4), 823-837.
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
103
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
Johnson, D.S., Mortazavi, A., Myers, R.M. and Wold, B. (2007) Genome-wide mapping of in vivo protein-DNA interactions. Science, 316 (5830), 1497-1502.
-
(2007)
Science
, vol.316
, Issue.5830
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
104
-
-
0031442518
-
Characterization of the yeast transcriptome
-
Velculescu, V.E., Zhang, L., Zhou, W., Vogelstein, J., Basrai, M.A., Bassett, D.E., Jr, Hieter, P., Vogelstein, B. and Kinzler, K.W. (1997) Characterization of the yeast transcriptome. Cell, 88 (2), 243-251.
-
(1997)
Cell
, vol.88
, Issue.2
, pp. 243-251
-
-
Velculescu, V.E.1
Zhang, L.2
Zhou, W.3
Vogelstein, J.4
Basrai, M.A.5
Bassett Jr., D.E.6
Hieter, P.7
Vogelstein, B.8
Kinzler, K.W.9
-
105
-
-
0037179669
-
Microarray standards at last
-
MGED Society
-
MGED Society (2002) Microarray standards at last. Nature, 419, 323.
-
(2002)
Nature
, vol.419
, pp. 323
-
-
-
106
-
-
0036081355
-
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
-
Edgar, R., Domrachev,M. and Lash, A.E. (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Research, 30 (1), 207-210.
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.1
, pp. 207-210
-
-
Edgar, R.1
Domrachev, M.2
Lash, A.E.3
-
107
-
-
13444249955
-
ArrayExpress-a public repository for microarray gene expression data at the EBI
-
Parkinson, H., Sarkans, U., Shojatalab, M., Abeygunawardena, N., Contrino, S., Coulson, R., Farne, A. and Lara, G.G., Holloway, E., Kapushesky, M. Lilja, P., Mukherjee, G., Oezcimen, A., Rayner, T., Rocca-Serra, P., Sharma, A., Sansone, S. and, Brazma, A. (2005) ArrayExpress-a public repository for microarray gene expression data at the EBI. Nucleic Acids Research, 33,D553-D555.
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Parkinson, H.1
Sarkans, U.2
Shojatalab, M.3
Abeygunawardena, N.4
Contrino, S.5
Coulson, R.6
Farne, A.7
Lara, G.G.8
Holloway, E.9
Kapushesky, M.10
Lilja, P.11
Mukherjee, G.12
Oezcimen, A.13
Rayner, T.14
Rocca-Serra, P.15
Sharma, A.16
Sansone, S.17
Brazma, A.18
-
108
-
-
0030012342
-
High-density oligonucleotide arrays
-
Blanchard, A.P., Kaiser, R.J. and Hood, L.E. (1996) High-density oligonucleotide arrays. Biosensors and Bioelectronics, 6/7, 687-690.
-
(1996)
Biosensors and Bioelectronics
, vol.6-7
, pp. 687-690
-
-
Blanchard, A.P.1
Kaiser, R.J.2
Hood, L.E.3
-
109
-
-
73049166370
-
Thermal renaturation of deoxyribonucleic acids
-
Marmur, J. and Doty, P. (1961) Thermal renaturation of deoxyribonucleic acids. Journal of Molecular Biology, 3, 585-594.
-
(1961)
Journal of Molecular Biology
, vol.3
, pp. 585-594
-
-
Marmur, J.1
Doty, P.2
|