Submission of microarray data to public repositories

PLoS Biology

Volumn 2, Issue 9, 2004, Pages

  Ball, Catherine A ^a   Brazma, Alvis ^b   Causton, Helen ^c   Chervitz, Steve ^d   Edgar, Ron ^e   Hingamp, Pascal ^f   Matese, John C ^g   Parkinson, Helen ^b   Quackenbush, John ^h   Ringwald, Martin ⁱ   Sansone, Susanna Assunta ^b   Sherlock, Gavin ^a   Spellman, Paul ^j   Stoeckert, Chris ^k   Tateno, Yoshio ^l   Taylor, Ronald ^m   White, Joseph ^h   Winegarden, Neil ⁿ  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^c IMPERIAL COLLEGE LONDON   (United Kingdom)

^d CIS Enterprise Data Group   (United States)

^e NATIONAL INSTITUTES OF HEALTH   (United States)

^f AIX MARSEILLE UNIVERSITY   (France)

^g PRINCETON UNIVERSITY   (United States)

^h J CRAIG VENTER INSTITUTE   (United States)

ⁱ JACKSON LABORATORY   (United States)

^j LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^k UNIVERSITY OF PENNSYLVANIA   (United States)

^l NATIONAL INSTITUTE OF GENETICS   (Japan)

^m PACIFIC NORTHWEST NATIONAL LABORATORY   (United States)

ⁿ UNIVERSITY HEALTH NETWORK   (Canada)

more..

Author keywords

[No Author keywords available]

Indexed keywords

DATA BASE; DNA MICROARRAY; GENE EXPRESSION; REVIEW; ARTICLE; BIOLOGY; COMPUTER PROGRAM; GENE EXPRESSION PROFILING; GENETIC DATABASE; INFORMATION RETRIEVAL; INFORMATION SYSTEM; INTERNET; METHODOLOGY; STANDARD;

COMPUTATIONAL BIOLOGY; DATABASE MANAGEMENT SYSTEMS; DATABASES, GENETIC; GENE EXPRESSION PROFILING; INFORMATION STORAGE AND RETRIEVAL; INFORMATION SYSTEMS; INTERNET; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SOFTWARE DESIGN;

EID: 19344365567     PISSN: 15449173     EISSN: None     Source Type: Journal    
DOI: 10.1371/journal.pbio.0020317     Document Type: Review

References (7)

1. Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, et al. (2002a) Standards for microarray data. Science 298: 539.
2. Ball CA, Sherlock G, Parkinson H, Rocca-Sera P, Brooksbank C, et al. (2002b) The underlying principles of scientific publication. Bioinformatics 18: 1409.
3. Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, et al. (2001) Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet 29: 365-371.
4. Brazma A, Parkinson H, Sarkans U, Shojatalab M, Vilo J, et al. (2003) ArrayExpress - A public repository for microarray gene expression data at the EBI. Nucleic Acids Res 31: 68-71.
5. Edgar R, Domrachev M, Lash AE (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210.
6. Ikeo K, Ishi-i J, Tamura T, Gojobori T, Tateno Y (2003) CIBEX: Center for information biology gene expression database. C R Biol 326: 1079-1082.
7. Spellman PT, Miller M, Stewart J, Troup C, Sarkans U, et al. (2002) Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biol 3: RESEARCH0046.