-
1
-
-
19344365567
-
Submission of microarray data to public repositories
-
Ball,C.A., Brazma,A., Causton,H., Chervitz,S., Edgar,R., Hingamp,P., Matese,J.C., Parkinson,H.E., Quackenbush,J., Ringwald,M. et al. (2004) Submission of microarray data to public repositories. PLoS Biol., 2, 1276-1277.
-
(2004)
PLoS Biol
, vol.2
, pp. 1276-1277
-
-
Ball, C.A.1
Brazma, A.2
Causton, H.3
Chervitz, S.4
Edgar, R.5
Hingamp, P.6
Matese, J.C.7
Parkinson, H.E.8
Quackenbush, J.9
Ringwald, M.10
-
2
-
-
0037246058
-
ArrayExpress-a public repository for microarray gene expression data at the EBI
-
Brazma,A., Parkinson,H., Sarkans,U., Shojatalab,M., Vilo,J., Abeygunawardena,N., Holloway,E., Kapushesky,M., Kemmeren,P., Lara,G.G. et al. (2003) ArrayExpress-a public repository for microarray gene expression data at the EBI. Nucleic Acids Res., 31, 68-71.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 68-71
-
-
Brazma, A.1
Parkinson, H.2
Sarkans, U.3
Shojatalab, M.4
Vilo, J.5
Abeygunawardena, N.6
Holloway, E.7
Kapushesky, M.8
Kemmeren, P.9
Lara, G.G.10
-
3
-
-
13444249955
-
ArrayExpress-a public repository for microarray gene expression data at the EBI
-
Parkinson,H., Sarkans,U., Shojatalab,M., Abeygunawardena,N., Contrino,S., Coulson,R., Farne,A., Lara,G.G., Holloway,E., Kapushesky,M. et al. (2005) ArrayExpress-a public repository for microarray gene expression data at the EBI. Nucleic Acids Res., 33, D553-D555.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Parkinson, H.1
Sarkans, U.2
Shojatalab, M.3
Abeygunawardena, N.4
Contrino, S.5
Coulson, R.6
Farne, A.7
Lara, G.G.8
Holloway, E.9
Kapushesky, M.10
-
4
-
-
33846039701
-
ArrayExpress - a public database of microarray experiments and gene expression profiles
-
Parkinson,H., Kapushesky,M., Shojatalab,M., Abeygunawardena,N., Coulson,R., Farne,A., Holloway,E., Kolesnykov,N., Lilja,P., Lukk,M. et al. (2007) ArrayExpress - a public database of microarray experiments and gene expression profiles. Nucleic Acids Res., 35, D747-D750.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Parkinson, H.1
Kapushesky, M.2
Shojatalab, M.3
Abeygunawardena, N.4
Coulson, R.5
Farne, A.6
Holloway, E.7
Kolesnykov, N.8
Lilja, P.9
Lukk, M.10
-
5
-
-
33846064113
-
NCBI GEO: Mining tens of millions of expression profiles - database and tools update
-
Barrett,T., Troup,D.B., Wilhite,S.E., Ledoux,P., Rudnev,D., Evangelista,C., Kim,I.F., Soboleva,A., Tomashevsky,M. and Edgar,R. (2007) NCBI GEO: Mining tens of millions of expression profiles - database and tools update. Nucleic Acids Res., 35, D760-D765.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Rudnev, D.5
Evangelista, C.6
Kim, I.F.7
Soboleva, A.8
Tomashevsky, M.9
Edgar, R.10
-
6
-
-
33845643077
-
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
-
Rayner,T., Rocca-Serra,P., Spellman,PT, Causton,H.C., Farne,A., Holloway,E., Liu,J., Maier,D.S., Miller,M., Petersen,K. et al. (2006) A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinformatics, 7, 489.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 489
-
-
Rayner, T.1
Rocca-Serra, P.2
Spellman, P.T.3
Causton, H.C.4
Farne, A.5
Holloway, E.6
Liu, J.7
Maier, D.S.8
Miller, M.9
Petersen, K.10
-
7
-
-
33645756545
-
-
Gentleman,R, Carey,V, Dudoit,S, Irizarry,R. and Huber,W, eds, Springer, New York
-
Gentleman,R., Carey,V., Dudoit,S., Irizarry,R. and Huber,W. (eds), Bioinformatics and Computational Biology Solutions Using R and Bioconductor. Springer, New York.
-
Bioinformatics and Computational Biology Solutions Using R and Bioconductor
-
-
-
8
-
-
0001677717
-
Controlling for the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini,Y. and Hochberg,Y. (1995) Controlling for the false discovery rate: A practical and powerful approach to multiple testing. J. R. Stat. Soc. B, 57, 289-300.
-
(1995)
J. R. Stat. Soc. B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
9
-
-
38349118307
-
Text processing through web services: Calling Whatizit
-
Rebholz-Schuhmann,D., Arregui,M., Gaudan,S., Kirsch,H. and Jimeno,A. (2008) Text processing through web services: Calling Whatizit. Bioinformatics, 24, 296-298.
-
(2008)
Bioinformatics
, vol.24
, pp. 296-298
-
-
Rebholz-Schuhmann, D.1
Arregui, M.2
Gaudan, S.3
Kirsch, H.4
Jimeno, A.5
-
10
-
-
15544381567
-
Overview and utilization of the NCI Thesaurus
-
Fragoso,G., de Coronado,S., Haber,M., Hartel,F. and Wright,L. (2004) Overview and utilization of the NCI Thesaurus. Comp. Funct. Genomics 5, 648-654.
-
(2004)
Comp. Funct. Genomics
, vol.5
, pp. 648-654
-
-
Fragoso, G.1
de Coronado, S.2
Haber, M.3
Hartel, F.4
Wright, L.5
-
11
-
-
33750879076
-
-
Brazma,A. and Parkinson,H. (2006) ArrayExpress service for reviewers/ editors of DNA microarray papers. Nat. Biotechnol., 24, 1321-1322.
-
Brazma,A. and Parkinson,H. (2006) ArrayExpress service for reviewers/ editors of DNA microarray papers. Nat. Biotechnol., 24, 1321-1322.
-
-
-
-
12
-
-
3142780737
-
Solexa Ltd
-
Bennett,S. (2004) Solexa Ltd. Pharmacogenomics, 5, 433-438.
-
(2004)
Pharmacogenomics
, vol.5
, pp. 433-438
-
-
Bennett, S.1
-
13
-
-
46249096804
-
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
-
Wilhelm,B., Marguerat,S., Watt,S., Schubert,F., Wood,V., Goodhead,I., Penkett,C.J., Rogers,J. and Bahler,J. (2008) Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature, 453, 1239-1243.
-
(2008)
Nature
, vol.453
, pp. 1239-1243
-
-
Wilhelm, B.1
Marguerat, S.2
Watt, S.3
Schubert, F.4
Wood, V.5
Goodhead, I.6
Penkett, C.J.7
Rogers, J.8
Bahler, J.9
-
14
-
-
46949098742
-
A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis
-
Down,T.A., Rakyan,V.K., Turner,D.J., Flicek,P., Li,H., Kulesha,E., Gräf,S., Johnson,N., Herrero,J., Tomazou,E.M. et al. (2008) A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis. Nat. Biotechnol., 26, 779-785.
-
(2008)
Nat. Biotechnol
, vol.26
, pp. 779-785
-
-
Down, T.A.1
Rakyan, V.K.2
Turner, D.J.3
Flicek, P.4
Li, H.5
Kulesha, E.6
Gräf, S.7
Johnson, N.8
Herrero, J.9
Tomazou, E.M.10
-
15
-
-
38549114091
-
4DXpress: A database for cross-species expression pattern comparisons
-
Haudry,Y., Berube,H., Letunic,I., Weeber,P.D., Gagneur,J., Girardot,C., Kapushesky,M., Arendt,D., Bork,P., Brazma,A. et al. (2008) 4DXpress: A database for cross-species expression pattern comparisons. Nucleic Acids Res., 36, D847-D853.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Haudry, Y.1
Berube, H.2
Letunic, I.3
Weeber, P.D.4
Gagneur, J.5
Girardot, C.6
Kapushesky, M.7
Arendt, D.8
Bork, P.9
Brazma, A.10
-
16
-
-
58149190751
-
Developing an application focused experimental factor ontology: Embracing the OBO Community
-
Toronto, San Diego, USA, pp
-
Malone,J., Zheng-Bradley,H.J., Rayner,T. and Parkinson,H. (2008) Developing an application focused experimental factor ontology: embracing the OBO Community. In Proceedings of the Eleventh Annual Bio-ontologies Meeting. Toronto, San Diego, USA, pp. 21-24.
-
(2008)
Proceedings of the Eleventh Annual Bio-ontologies Meeting
, pp. 21-24
-
-
Malone, J.1
Zheng-Bradley, H.J.2
Rayner, T.3
Parkinson, H.4
-
17
-
-
58149189374
-
Disease ontology: Structuring medical billing codes for medical record mining and disease gene association
-
Brisbane, San Diego, USA, pp
-
Dyck,P. and Chisholm,R. (2003) Disease ontology: Structuring medical billing codes for medical record mining and disease gene association. In Proceedings of the Sixth Annual Bio-ontologies Meeting. Brisbane, San Diego, USA, pp. 53-55.
-
(2003)
Proceedings of the Sixth Annual Bio-ontologies Meeting
, pp. 53-55
-
-
Dyck, P.1
Chisholm, R.2
-
18
-
-
21944445759
-
An ontology for cell types
-
Bard,J., Rhee,S.Y. and Ashburner,M. (2005) An ontology for cell types. Genome Biol., 6, R21.
-
(2005)
Genome Biol
, vol.6
-
-
Bard, J.1
Rhee, S.Y.2
Ashburner, M.3
-
19
-
-
33645348241
-
The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries
-
Cote,R.G., Jones,P., Apweiler,R. and Hermjakob,H. (2006) The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries. BMC Bioinformatics, 7, 97.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 97
-
-
Cote, R.G.1
Jones, P.2
Apweiler, R.3
Hermjakob, H.4
-
20
-
-
45749145794
-
The first RSBI (ISA-TAB) workshop: "Can a simple format work for complex studies?
-
Sansone,S.A., Rocca-Serra,P., Brandizi,M., Brazma,A., Field,D., Fostel,J., Garrow,A.G., Gilbert,J., Goodsaid,F., Hardy,N. et al. (2008) The first RSBI (ISA-TAB) workshop: "Can a simple format work for complex studies?". OMICS, 12, 143-149.
-
(2008)
OMICS
, vol.12
, pp. 143-149
-
-
Sansone, S.A.1
Rocca-Serra, P.2
Brandizi, M.3
Brazma, A.4
Field, D.5
Fostel, J.6
Garrow, A.G.7
Gilbert, J.8
Goodsaid, F.9
Hardy, N.10
-
21
-
-
3242885824
-
Expression Profiler: Next generation-an online platform for analysis of microarray data
-
Kapushesky,M., Kemmeren,P., Culhane,A.C., Durinck,S., Ihmels,J., Körner,C., Kull,M., Torrente,A., Sarkans,U., Vilo,J. et al. (2004) Expression Profiler: Next generation-an online platform for analysis of microarray data. Nucleic Acids Res., 32, W465-W470.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Kapushesky, M.1
Kemmeren, P.2
Culhane, A.C.3
Durinck, S.4
Ihmels, J.5
Körner, C.6
Kull, M.7
Torrente, A.8
Sarkans, U.9
Vilo, J.10
|