-
1
-
-
84873899821
-
Bias, randomization, and ovarian proteomic data: A reply to "producers and consumers". Cancer
-
Baggerly KA, Coombes KR, Morris JS. 2005. Bias, randomization, and ovarian proteomic data: A reply to "producers and consumers". Cancer Inform 1:9-14.
-
(2005)
Inform
, vol.1
, pp. 9-14
-
-
Baggerly, K.A.1
Coombes, K.R.2
Morris, J.S.3
-
2
-
-
0027177451
-
The SWISS-PROT protein sequence data bank, recent developments
-
Bairoch A, Boeckmann B. 1993. The SWISS-PROT protein sequence data bank, recent developments. Nucleic Acids Res 21:3093-3096.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 3093-3096
-
-
Bairoch, A.1
Boeckmann, B.2
-
3
-
-
0027235784
-
The PIR-International databases
-
Barker WC, George DG, Mewes HW, Pfeiffer F, Tsugita A. 1993. The PIR-International databases. Nucleic Acids Res 21:3089-3092.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 3089-3092
-
-
Barker, W.C.1
George, D.G.2
Mewes, H.W.3
Pfeiffer, F.4
Tsugita, A.5
-
4
-
-
0024772621
-
Cinnamic acid derivatives as matrices for ultraviolet laser desorption mass spectrometry of proteins
-
Beavis RC, Chait BT. 1989a. Cinnamic acid derivatives as matrices for ultraviolet laser desorption mass spectrometry of proteins. Rapid Commun Mass Spectrom 3:432-435.
-
(1989)
Rapid Commun Mass Spectrom
, vol.3
, pp. 432-435
-
-
Beavis, R.C.1
Chait, B.T.2
-
5
-
-
0024689657
-
Factors affecting the ultraviolet laser desorption of proteins
-
Beavis RC, Chait BT. 1989b. Factors affecting the ultraviolet laser desorption of proteins. Rapid Commun Mass Spectrom 3:233-237.
-
(1989)
Rapid Commun Mass Spectrom
, vol.3
, pp. 233-237
-
-
Beavis, R.C.1
Chait, B.T.2
-
6
-
-
0024773406
-
Matrix-assisted laser-desorption mass spectrometry using 355 nm radiation
-
Beavis RC, Chait BT. 1989c. Matrix-assisted laser-desorption mass spectrometry using 355 nm radiation. Rapid Commun Mass Spectrom 3:436-439.
-
(1989)
Rapid Commun Mass Spectrom
, vol.3
, pp. 436-439
-
-
Beavis, R.C.1
Chait, B.T.2
-
7
-
-
0025186347
-
Rapid, sensitive analysis of protein mixtures by mass spectrometry
-
Beavis RC, Chait BT. 1990. Rapid, sensitive analysis of protein mixtures by mass spectrometry. Proc Natl Acad Sci USA 87:6873-6877.
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 6873-6877
-
-
Beavis, R.C.1
Chait, B.T.2
-
9
-
-
84994921866
-
Mass spectrometric determination of the amino acid sequence of peptides and proteins
-
Biemann K, Martin SA. 1987. Mass spectrometric determination of the amino acid sequence of peptides and proteins. Mass Spectrom Rev 6:1-76.
-
(1987)
Mass Spectrom Rev
, vol.6
, pp. 1-76
-
-
Biemann, K.1
Martin, S.A.2
-
10
-
-
0029004044
-
Probing the solution structure of the DNA-binding protein Max by a combination of proteolysis and mass spectrometry
-
Cohen SL, Ferre-D'Amare AR, Burley SK, Chait BT. 1995. Probing the solution structure of the DNA-binding protein Max by a combination of proteolysis and mass spectrometry. Protein Sci 4:1088-1099.
-
(1995)
Protein Sci
, vol.4
, pp. 1088-1099
-
-
Cohen, S.L.1
Ferre-D'Amare, A.R.2
Burley, S.K.3
Chait, B.T.4
-
11
-
-
3142702204
-
TANDEM: Matching proteins with tandem mass spectra
-
Craig R, Beavis RC. 2004. TANDEM: Matching proteins with tandem mass spectra. Bioinformatics 20:1466-1467.
-
(2004)
Bioinformatics
, vol.20
, pp. 1466-1467
-
-
Craig, R.1
Beavis, R.C.2
-
12
-
-
11144320641
-
Open source system for analyzing, validating, and storing protein identification data
-
Craig R, Cortens JP, Beavis RC. 2004. Open source system for analyzing, validating, and storing protein identification data, J Proteome Res 3:1234-1242.
-
(2004)
J Proteome Res
, vol.3
, pp. 1234-1242
-
-
Craig, R.1
Cortens, J.P.2
Beavis, R.C.3
-
13
-
-
33747170146
-
Using annotated peptide mass spectrum libraries for protein identification
-
Craig R, Cortens JC, Fenyo D, Beavis RC. 2006. Using annotated peptide mass spectrum libraries for protein identification. J Proteome Res 5:1843-1849.
-
(2006)
J Proteome Res
, vol.5
, pp. 1843-1849
-
-
Craig, R.1
Cortens, J.C.2
Fenyo, D.3
Beavis, R.C.4
-
14
-
-
2942568222
-
Unimod: Protein modifications for mass spectrometry
-
Creasy DM, Cottrell JS. 2004. Unimod: Protein modifications for mass spectrometry, Proteomics 4:1534-1536.
-
(2004)
Proteomics
, vol.4
, pp. 1534-1536
-
-
Creasy, D.M.1
Cottrell, J.S.2
-
15
-
-
33644876912
-
The PeptideAtlas project
-
Desiere F, Deutsch EW, King NL, Nesvizhskii AI, Mallick P, Eng J, Chen S, Eddes J, Loevenich SN, Aebersold R. 2006. The PeptideAtlas project. Nucleic Acids Res 34:D655-D658.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Desiere, F.1
Deutsch, E.W.2
King, N.L.3
Nesvizhskii, A.I.4
Mallick, P.5
Eng, J.6
Chen, S.7
Eddes, J.8
Loevenich, S.N.9
Aebersold, R.10
-
16
-
-
0037453072
-
A high-throughput gene expression analysis technique using competitive PCR and matrix-assisted laser desorption ionization time-of-flight MS
-
Ding C, Cantor CR. 2003. A high-throughput gene expression analysis technique using competitive PCR and matrix-assisted laser desorption ionization time-of-flight MS. Proc Natl Acad Sci USA 100:3059-3064.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 3059-3064
-
-
Ding, C.1
Cantor, C.R.2
-
17
-
-
33646232758
-
Applications of artificial intelligence for chemical inference. II. Interpretation of low-resolution mass spectra of Ketones
-
Duffield AM, Robertson AV, Djerassi C, Buchanan BG, Sutherland GL, Feigenbaum EA, Lederberg J. 1969. Applications of artificial intelligence for chemical inference. II. Interpretation of low-resolution mass spectra of Ketones. J Am Chem Soc 91:2977-2981.
-
(1969)
J Am Chem Soc
, vol.91
, pp. 2977-2981
-
-
Duffield, A.M.1
Robertson, A.V.2
Djerassi, C.3
Buchanan, B.G.4
Sutherland, G.L.5
Feigenbaum, E.A.6
Lederberg, J.7
-
18
-
-
1242307292
-
Probity: A protein identification algorithm with accurate assignment of the statistical significance of the results
-
Eriksson J, Fenyo D. 2004. Probity: A protein identification algorithm with accurate assignment of the statistical significance of the results. J Proteome Res 3:32-36.
-
(2004)
J Proteome Res
, vol.3
, pp. 32-36
-
-
Eriksson, J.1
Fenyo, D.2
-
19
-
-
0034161650
-
A statistical basis for testing the significance of mass spectrometric protein identification results
-
Eriksson J, Chait BT, Fenyo D. 2000. A statistical basis for testing the significance of mass spectrometric protein identification results. Anal Chem 72:999-1005.
-
(2000)
Anal Chem
, vol.72
, pp. 999-1005
-
-
Eriksson, J.1
Chait, B.T.2
Fenyo, D.3
-
20
-
-
0031460873
-
A software tool for the analysis of mass spectrometric disulfide mapping experiments
-
Fenyo D. 1997. A software tool for the analysis of mass spectrometric disulfide mapping experiments. Comput Appl Biosci 13:617-618.
-
(1997)
Comput Appl Biosci
, vol.13
, pp. 617-618
-
-
Fenyo, D.1
-
21
-
-
0037442649
-
A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes
-
Fenyo D, Beavis RC. 2003. A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes. Anal Chem 75:768-774.
-
(2003)
Anal Chem
, vol.75
, pp. 768-774
-
-
Fenyo, D.1
Beavis, R.C.2
-
22
-
-
7044246160
-
Open mass spectrometry search algorithm
-
Geer LY, Markey SP, Kowalak JA, Wagner L, Xu M, Maynard DM, Yang X, Shi W, Bryant SH. 2004. Open mass spectrometry search algorithm. J Proteome Res 3:958-964.
-
(2004)
J Proteome Res
, vol.3
, pp. 958-964
-
-
Geer, L.Y.1
Markey, S.P.2
Kowalak, J.A.3
Wagner, L.4
Xu, M.5
Maynard, D.M.6
Yang, X.7
Shi, W.8
Bryant, S.H.9
-
23
-
-
0037795741
-
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
-
Gerber SA, Rush J, Stemman O, Kirschner MW, Gygi SP. 2003. Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc Natl Acad Sci USA 100:6940-6945.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 6940-6945
-
-
Gerber, S.A.1
Rush, J.2
Stemman, O.3
Kirschner, M.W.4
Gygi, S.P.5
-
24
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi SP, Rist B, Gerber SA, Turecek F, Gelb MH, Aebersold R. 1999. Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat Biotechnol 17:994-999.
-
(1999)
Nat Biotechnol
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
25
-
-
0030863195
-
Multiplex genotyping of PCR products with MassTag-labeled primers
-
Haff LA, Smirnov IP. 1997. Multiplex genotyping of PCR products with MassTag-labeled primers. Nucleic Acids Res 25:3749-3750.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3749-3750
-
-
Haff, L.A.1
Smirnov, I.P.2
-
26
-
-
0345642483
-
Matrix-assisted laser desorption/ionization mass spectrometry (MALDI) of endonuclease digests of RNA
-
Hahner S, Ludemann HC, Kirpekar F, Nordhoff E, Roepstorff P, Galla HJ, Hillenkamp F. 1997. Matrix-assisted laser desorption/ionization mass spectrometry (MALDI) of endonuclease digests of RNA. Nucleic Acids Res 25:1957-1964.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 1957-1964
-
-
Hahner, S.1
Ludemann, H.C.2
Kirpekar, F.3
Nordhoff, E.4
Roepstorff, P.5
Galla, H.J.6
Hillenkamp, F.7
-
27
-
-
0344770075
-
Conversational mass spectral retrieval system and its use as an aid in structure determination
-
Heller S. 1972. Conversational mass spectral retrieval system and its use as an aid in structure determination. Analytical Chemistry 44:1951-1961.
-
(1972)
Analytical Chemistry
, vol.44
, pp. 1951-1961
-
-
Heller, S.1
-
28
-
-
33747154645
-
The history of the NIST/EPA/NIH mass spectral database. Today's Chemist at Work
-
Heller S. 1999. The history of the NIST/EPA/NIH mass spectral database. Today's Chemist at Work 8:45-50.
-
(1999)
, vol.8
, pp. 45-50
-
-
Heller, S.1
-
29
-
-
0027198862
-
Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases
-
Henzel WJ, Billeci TM, Stults JT, Wong SC, Grimley C, Watanabe C. 1993. Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. Proc Natl Acad Sci USA 90:5011-5015.
-
(1993)
Proc Natl Acad Sci USA
, vol.90
, pp. 5011-5015
-
-
Henzel, W.J.1
Billeci, T.M.2
Stults, J.T.3
Wong, S.C.4
Grimley, C.5
Watanabe, C.6
-
30
-
-
33745515108
-
The proteomics identifications database (PRIDE) and the ProteomExchange consortium: Making proteomics data accessible
-
Hermjakob H, Apweiler R. 2006. The proteomics identifications database (PRIDE) and the ProteomExchange consortium: Making proteomics data accessible. Expert Rev Proteomics 3:1-3.
-
(2006)
Expert Rev Proteomics
, vol.3
, pp. 1-3
-
-
Hermjakob, H.1
Apweiler, R.2
-
31
-
-
0025677738
-
Mass spectrometry of peptides and proteins by matrix-assisted ultraviolet laser desorption/ionization
-
Hillenkamp F, Karas M. 1990. Mass spectrometry of peptides and proteins by matrix-assisted ultraviolet laser desorption/ionization. Methods Enzymol 193:280-295.
-
(1990)
Methods Enzymol
, vol.193
, pp. 280-295
-
-
Hillenkamp, F.1
Karas, M.2
-
32
-
-
84875463071
-
Matrix-assisted laser desorption/ionization mass spectrometry of biopolymers
-
Hillenkamp F, Karas M, Beavis RC, Chait BT. 1991. Matrix-assisted laser desorption/ionization mass spectrometry of biopolymers. Anal Chem 63:1193A-1203A.
-
(1991)
Anal Chem
, vol.63
-
-
Hillenkamp, F.1
Karas, M.2
Beavis, R.C.3
Chait, B.T.4
-
34
-
-
0024289037
-
Laser desorption ionization of proteins with molecular masses exceeding 10,000 Daltons
-
Karas M, Hillenkamp F. 1988. Laser desorption ionization of proteins with molecular masses exceeding 10,000 Daltons, Anal Chem 60:2299-2301.
-
(1988)
Anal Chem
, vol.60
, pp. 2299-2301
-
-
Karas, M.1
Hillenkamp, F.2
-
35
-
-
0037108887
-
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
-
Keller A, Nesvizhskii AI, Kolker E, Aebersold R. 2002. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal Chem 74:5383-5392.
-
(2002)
Anal Chem
, vol.74
, pp. 5383-5392
-
-
Keller, A.1
Nesvizhskii, A.I.2
Kolker, E.3
Aebersold, R.4
-
36
-
-
0036467695
-
High-throughput protein characterization using mass spectrometric immunoassay
-
Kiernan UA, Tubbs KA, Gruber K, Nedelkov D, Niederkofler EE, Williams P, Nelson RW. 2002. High-throughput protein characterization using mass spectrometric immunoassay. Anal Biochem 301:49-56.
-
(2002)
Anal Biochem
, vol.301
, pp. 49-56
-
-
Kiernan, U.A.1
Tubbs, K.A.2
Gruber, K.3
Nedelkov, D.4
Niederkofler, E.E.5
Williams, P.6
Nelson, R.W.7
-
37
-
-
33947298489
-
-
Lederberg J, Sutherland GL, Buchanan BG, Feigenbaum EA, Robertson AV, Duffield AM, Djerassi C. 1969. Applications of artificial intelligence for chemical inference. I. The number of possible organic compounds. Acyclic structures containing C, H, O, and N. J Am Chem Soc 91:2973-2976.
-
Lederberg J, Sutherland GL, Buchanan BG, Feigenbaum EA, Robertson AV, Duffield AM, Djerassi C. 1969. Applications of artificial intelligence for chemical inference. I. The number of possible organic compounds. Acyclic structures containing C, H, O, and N. J Am Chem Soc 91:2973-2976.
-
-
-
-
38
-
-
0030753972
-
Identification of apolipoprotein E polymorphisms using temperature cycled primer oligo base extension and mass spectrometry
-
Little DP, Braun A, Darnhofer-Demar B, Koster H. 1997. Identification of apolipoprotein E polymorphisms using temperature cycled primer oligo base extension and mass spectrometry. Eur J Clin Chem Clin Biochem 35:545-548.
-
(1997)
Eur J Clin Chem Clin Biochem
, vol.35
, pp. 545-548
-
-
Little, D.P.1
Braun, A.2
Darnhofer-Demar, B.3
Koster, H.4
-
39
-
-
0017240393
-
Californium-252 plasma desorption mass spectroscopy
-
Macfarlane RD, Torgerson DF. 1976. Californium-252 plasma desorption mass spectroscopy. Science 191:920-925.
-
(1976)
Science
, vol.191
, pp. 920-925
-
-
Macfarlane, R.D.1
Torgerson, D.F.2
-
40
-
-
0034132537
-
The characteristics of peptide collision-induced dissociation using a high-performance MALDI-TOF/TOF tandem mass spectrometer
-
Medzihradszky KF, Campbell JM, Baldwin MA, Falick AM, Juhasz P, Vestal ML, Burlingame AL. 2000. The characteristics of peptide collision-induced dissociation using a high-performance MALDI-TOF/TOF tandem mass spectrometer. Anal Chem 72:552-558.
-
(2000)
Anal Chem
, vol.72
, pp. 552-558
-
-
Medzihradszky, K.F.1
Campbell, J.M.2
Baldwin, M.A.3
Falick, A.M.4
Juhasz, P.5
Vestal, M.L.6
Burlingame, A.L.7
-
41
-
-
0033915395
-
Quantitation of peptides and proteins by matrix-assisted laser desorption/ionization mass spectrometry using (18)0-labeled internal standards
-
Mirgorodskaya OA, Kozmin YP, Titov MI, Korner R, Sonksen CP, Roepstorff P. 2000. Quantitation of peptides and proteins by matrix-assisted laser desorption/ionization mass spectrometry using (18)0-labeled internal standards. Rapid Commun Mass Spectrom 14:1226-1232.
-
(2000)
Rapid Commun Mass Spectrom
, vol.14
, pp. 1226-1232
-
-
Mirgorodskaya, O.A.1
Kozmin, Y.P.2
Titov, M.I.3
Korner, R.4
Sonksen, C.P.5
Roepstorff, P.6
-
42
-
-
0042338362
-
A statistical model for identifying proteins by tandem mass spectrometry
-
Nesvizhskii AI, Keller A, Kolker E, Aebersold R. 2003. A statistical model for identifying proteins by tandem mass spectrometry. Anal Chem 75:4646-4658.
-
(2003)
Anal Chem
, vol.75
, pp. 4646-4658
-
-
Nesvizhskii, A.I.1
Keller, A.2
Kolker, E.3
Aebersold, R.4
-
43
-
-
0027031549
-
Matrix-assisted laser desorption/ionization mass spectrometry of nucleic acids with wavelengths in the ultraviolet and infrared
-
Nordhoff E, Ingendoh A, Cramer R, Overberg A, Stahl B, Karas M, Hillenkamp F, Crain PF. 1992. Matrix-assisted laser desorption/ionization mass spectrometry of nucleic acids with wavelengths in the ultraviolet and infrared. Rapid Commun Mass Spectrom 6:771-776.
-
(1992)
Rapid Commun Mass Spectrom
, vol.6
, pp. 771-776
-
-
Nordhoff, E.1
Ingendoh, A.2
Cramer, R.3
Overberg, A.4
Stahl, B.5
Karas, M.6
Hillenkamp, F.7
Crain, P.F.8
-
44
-
-
0033535961
-
Accurate quantitation of protein expression and site-specific phosphorylation
-
Oda Y, Huang K, Cross FR, Cowburn D, Chait BT. 1999. Accurate quantitation of protein expression and site-specific phosphorylation. Proc Natl Acad Sci USA 96:6591-6596.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 6591-6596
-
-
Oda, Y.1
Huang, K.2
Cross, F.R.3
Cowburn, D.4
Chait, B.T.5
-
45
-
-
23944492134
-
-
Omenn GS, States DJ, Adamski M, Blackwell TW, Menon R, Hermjakob H, Apweiler R, Haab BB, Simpson RJ, Eddes JS, Kapp EA, Moritz RL, Chan DW, Rai AJ, Admon A, Aebersold R, Eng J, Hancock WS, Hefta SA, Meyer H, Paik YK, Yoo JS, Ping P, Pounds J, Adkins J, Qian X, Wang R, Wasinger V, Wu CY, Zhao X, Zeng R, Archakov A, Tsugita A, Beer I, Pandey A, Pisano M, Andrews P, Tammen H, Speicher DW, Hanash SM. 2005. Overview of the HUPO plasma proteome project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics 5:3226-3245.
-
Omenn GS, States DJ, Adamski M, Blackwell TW, Menon R, Hermjakob H, Apweiler R, Haab BB, Simpson RJ, Eddes JS, Kapp EA, Moritz RL, Chan DW, Rai AJ, Admon A, Aebersold R, Eng J, Hancock WS, Hefta SA, Meyer H, Paik YK, Yoo JS, Ping P, Pounds J, Adkins J, Qian X, Wang R, Wasinger V, Wu CY, Zhao X, Zeng R, Archakov A, Tsugita A, Beer I, Pandey A, Pisano M, Andrews P, Tammen H, Speicher DW, Hanash SM. 2005. Overview of the HUPO plasma proteome project: Results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database. Proteomics 5:3226-3245.
-
-
-
-
46
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong SE, Blagoev B, Kratchmarova I, Kristensen DB, Steen H, Pandey A, Mann M. 2002. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol Cell Proteomics 1:376-386.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
47
-
-
0037116832
-
Use of proteomic patterns in serum to identify ovarian cancer
-
Petricoin EF, Ardekani AM, Hitt BA, Levine PJ, Fusaro VA, Steinberg SM, Mills GB, Simone C, Fishman DA, Kohn EC, Liotta LA. 2002. Use of proteomic patterns in serum to identify ovarian cancer. Lancet 359:572-577.
-
(2002)
Lancet
, vol.359
, pp. 572-577
-
-
Petricoin, E.F.1
Ardekani, A.M.2
Hitt, B.A.3
Levine, P.J.4
Fusaro, V.A.5
Steinberg, S.M.6
Mills, G.B.7
Simone, C.8
Fishman, D.A.9
Kohn, E.C.10
Liotta, L.A.11
-
48
-
-
0027240210
-
Matrix-assisted laser desorption ionization time-of-flight mass spectrometry: A powerful tool for the mass and sequence analysis of natural and modified oligonucleotides
-
Pieles U, Zurcher W, Schar M, Moser HE. 1993. Matrix-assisted laser desorption ionization time-of-flight mass spectrometry: A powerful tool for the mass and sequence analysis of natural and modified oligonucleotides. Nucleic Acids Res 21:3191-3196.
-
(1993)
Nucleic Acids Res
, vol.21
, pp. 3191-3196
-
-
Pieles, U.1
Zurcher, W.2
Schar, M.3
Moser, H.E.4
-
49
-
-
84987419408
-
Proposal for a common nomenclature for sequence ions in mass spectra of peptides
-
Roepstorff P, Fohlman J. 1984. Proposal for a common nomenclature for sequence ions in mass spectra of peptides. Biomed Mass Spectrom 11:601.
-
(1984)
Biomed Mass Spectrom
, vol.11
, pp. 601
-
-
Roepstorff, P.1
Fohlman, J.2
-
50
-
-
19944432197
-
Multiplexed protein quantitation in saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross PL, Huang YN, Marchese JN, Williamson B, Parker K, Hattan S, Khainovski N, Pillai S, Dey S, Daniels S, Purkayastha S, Juhasz P, Martin S, Bartlet-Jones M, He F, Jacobson A, Pappin DJ. 2004. Multiplexed protein quantitation in saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics 3:1154-1169.
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillai, S.8
Dey, S.9
Daniels, S.10
Purkayastha, S.11
Juhasz, P.12
Martin, S.13
Bartlet-Jones, M.14
He, F.15
Jacobson, A.16
Pappin, D.J.17
-
51
-
-
0142110700
-
Applications of artificial intelligence for chemical inference. III. Aliphatic ethers diagnosed by their low-resolution mass spectra and nuclear magnetic resonance data
-
Schroll G. 1969. Applications of artificial intelligence for chemical inference. III. Aliphatic ethers diagnosed by their low-resolution mass spectra and nuclear magnetic resonance data. J Am Chem Soc 91:2977-2981.
-
(1969)
J Am Chem Soc
, vol.91
, pp. 2977-2981
-
-
Schroll, G.1
-
52
-
-
0027982114
-
The sigma subunit conserved region 3 is part of "5′-face" of active center of Escherichia coli RNA polymerase
-
Severinov K, Fenyo D, Severinova E, Mustaev A, Chait BT, Goldfarb A, Darst SA. 1994. The sigma subunit conserved region 3 is part of "5′-face" of active center of Escherichia coli RNA polymerase. J Biol Chem 269:20826-20828.
-
(1994)
J Biol Chem
, vol.269
, pp. 20826-20828
-
-
Severinov, K.1
Fenyo, D.2
Severinova, E.3
Mustaev, A.4
Chait, B.T.5
Goldfarb, A.6
Darst, S.A.7
-
53
-
-
0034194446
-
MALDI quadrupole time-of-flight mass spectrometry: A powerful tool for proteomic research
-
Shevchenko A, Loboda A, Shevchenko A, Ens W, Standing KG. 2000. MALDI quadrupole time-of-flight mass spectrometry: A powerful tool for proteomic research. Anal Chem 72:2132-2141.
-
(2000)
Anal Chem
, vol.72
, pp. 2132-2141
-
-
Shevchenko, A.1
Loboda, A.2
Shevchenko, A.3
Ens, W.4
Standing, K.G.5
-
54
-
-
84984042980
-
Protein and polymer analysis up to m/z 100,000 by laser desorption time-of-flight mass spectrometry
-
Tanaka K, Waki H, Ido Y, Akita S, Yoshida Y, Yoshida T. 1988. Protein and polymer analysis up to m/z 100,000 by laser desorption time-of-flight mass spectrometry. Rapid Commun Mass Spectrom 2:151-153.
-
(1988)
Rapid Commun Mass Spectrom
, vol.2
, pp. 151-153
-
-
Tanaka, K.1
Waki, H.2
Ido, Y.3
Akita, S.4
Yoshida, Y.5
Yoshida, T.6
-
55
-
-
34249062964
-
The minimum information about a proteomics experiment (MIAPE)
-
Taylor CF, Paton NW, Lilley KS, Binz PA, Julian RK Jr, Jones AR, Zhu W, Apweiler R, Aebersold R, Deutsch EW, Dunn MJ, Heck AJ, Leitner A, Macht M, Mann M, Martens L, Neubert TA, Patterson SD, Ping P, Seymour SL, Souda P, Tsugita A, Vandekerckhove J, Vondriska TM, Whitelegge JP, Wilkins MR, Xenarios I, Yates JR III, Hermjakob H. 2007. The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol 25:887-893.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 887-893
-
-
Taylor, C.F.1
Paton, N.W.2
Lilley, K.S.3
Binz, P.A.4
Julian Jr, R.K.5
Jones, A.R.6
Zhu, W.7
Apweiler, R.8
Aebersold, R.9
Deutsch, E.W.10
Dunn, M.J.11
Heck, A.J.12
Leitner, A.13
Macht, M.14
Mann, M.15
Martens, L.16
Neubert, T.A.17
Patterson, S.D.18
Ping, P.19
Seymour, S.L.20
Souda, P.21
Tsugita, A.22
Vandekerckhove, J.23
Vondriska, T.M.24
Whitelegge, J.P.25
Wilkins, M.R.26
Xenarios, I.27
Yates III, J.R.28
Hermjakob, H.29
more..
-
56
-
-
0348202422
-
Analysis and accurate quantification of CpG methylation by MALDI mass spectrometry
-
Tost J, Schatz P, Schuster M, Berlin K, Gut IG. 2003. Analysis and accurate quantification of CpG methylation by MALDI mass spectrometry. Nucleic Acids Res 31:e50.
-
(2003)
Nucleic Acids Res
, vol.31
-
-
Tost, J.1
Schatz, P.2
Schuster, M.3
Berlin, K.4
Gut, I.G.5
-
57
-
-
0242669340
-
A modular cross-linking approach for exploring protein interactions
-
Trester-Zedlitz M, Kamada K, Burley SK, Fenyo D, Chait BT, Muir TW. 2003. A modular cross-linking approach for exploring protein interactions. J Am Chem Soc 125:2416-2425.
-
(2003)
J Am Chem Soc
, vol.125
, pp. 2416-2425
-
-
Trester-Zedlitz, M.1
Kamada, K.2
Burley, S.K.3
Fenyo, D.4
Chait, B.T.5
Muir, T.W.6
-
58
-
-
0028470545
-
Comparative mapping of recombinant proteins and glycoproteins by plasma desorption and matrix-assisted laser desorption/ionization mass spectrometry
-
Tsarbopoulos A, Karas M, Strupat K, Pramanik BN, Nagabhushan TL, Hillenkamp F. 1994. Comparative mapping of recombinant proteins and glycoproteins by plasma desorption and matrix-assisted laser desorption/ionization mass spectrometry. Anal Chem 66:2062-2070.
-
(1994)
Anal Chem
, vol.66
, pp. 2062-2070
-
-
Tsarbopoulos, A.1
Karas, M.2
Strupat, K.3
Pramanik, B.N.4
Nagabhushan, T.L.5
Hillenkamp, F.6
-
59
-
-
23944456398
-
Correcting common errors in identifying cancer-specific serum peptide signatures
-
Villanueva J, Philip J, Chaparro CA, Li Y, Toledo-Crow R, DeNoyer L, Fleisher M, Robbins RJ, Tempst P. 2005. Correcting common errors in identifying cancer-specific serum peptide signatures. J Proteome Res 4:1060-1072.
-
(2005)
J Proteome Res
, vol.4
, pp. 1060-1072
-
-
Villanueva, J.1
Philip, J.2
Chaparro, C.A.3
Li, Y.4
Toledo-Crow, R.5
DeNoyer, L.6
Fleisher, M.7
Robbins, R.J.8
Tempst, P.9
-
60
-
-
0027551428
-
Matrix-assisted laser desorption time-of-flight mass spectrometry of oligonucleotides using 3-hydroxypicolinic acid as an ultraviolet-sensitive matrix
-
Wu KJ, Steding A, Becker CH. 1993. Matrix-assisted laser desorption time-of-flight mass spectrometry of oligonucleotides using 3-hydroxypicolinic acid as an ultraviolet-sensitive matrix. Rapid Commun Mass Spectrom 7:142-146.
-
(1993)
Rapid Commun Mass Spectrom
, vol.7
, pp. 142-146
-
-
Wu, K.J.1
Steding, A.2
Becker, C.H.3
-
61
-
-
0034213595
-
ProFound: An expert system for protein identification using mass spectrometric peptide mapping information
-
Zhang W, Chait BT. 2000. ProFound: An expert system for protein identification using mass spectrometric peptide mapping information. Anal Chem 72:2482-2489.
-
(2000)
Anal Chem
, vol.72
, pp. 2482-2489
-
-
Zhang, W.1
Chait, B.T.2
|