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Volumn 25, Issue 3, 2006, Pages 409-449

Processing and classification of protein mass spectra

Author keywords

Biomarker discovery; Classification; Data mining; Dimensionality reduction; Machine learning; MS preprocessing; Proteomics

Indexed keywords

BIOMARKER DISCOVERY; CLASSIFICATION; DIMENSIONALITY REDUCTION; MS PREPROCESSING; PROTEOMICS;

EID: 33646252011     PISSN: 02777037     EISSN: None     Source Type: Journal    
DOI: 10.1002/mas.20072     Document Type: Article
Times cited : (147)

References (192)
  • 1
    • 0034954376 scopus 로고    scopus 로고
    • Aligning gene expression time series with time warping algorithms
    • Aach J. Church GM. 2001. Aligning gene expression time series with time warping algorithms. Bioinformatics 17:495-508.
    • (2001) Bioinformatics , vol.17 , pp. 495-508
    • Aach, J.1    Church, G.M.2
  • 3
    • 0037458636 scopus 로고    scopus 로고
    • Comprehensive proteomic analysis of breast cancer cell membranes reveals unique proteins with potential roles in clinical cancer
    • Adam PJ, Boyd R, Tyson KL, Fletcher GC, Stamps A, Hudson L, Poyser HR, Redpath N. 2003. Comprehensive proteomic analysis of breast cancer cell membranes reveals unique proteins with potential roles in clinical cancer. J Biol Chem 278:6482-6489.
    • (2003) J Biol Chem , vol.278 , pp. 6482-6489
    • Adam, P.J.1    Boyd, R.2    Tyson, K.L.3    Fletcher, G.C.4    Stamps, A.5    Hudson, L.6    Poyser, H.R.7    Redpath, N.8
  • 4
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • Aebersold R, Mann M. 2003. Mass spectrometry-based proteomics. Nature 422:198-207.
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 7
    • 0037076322 scopus 로고    scopus 로고
    • Selection bias in gene extraction on the basis of microarray gene-expression data
    • Ambroise C, McLachlan G. 2002. Selection bias in gene extraction on the basis of microarray gene-expression data. Proc Natl Acad Sci USA 99:6562-6566.
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 6562-6566
    • Ambroise, C.1    McLachlan, G.2
  • 8
    • 11144254100 scopus 로고    scopus 로고
    • Quantifying reproducibility for differential proteomics: Noise analysis for protein liquid chromatography-mass spectrometry of human serum
    • Anderle M, Roy S, Lin H. Becker C, Joho K. 2004. Quantifying reproducibility for differential proteomics: Noise analysis for protein liquid chromatography-mass spectrometry of human serum. Bioinformatics 20:3575-3582.
    • (2004) Bioinformatics , vol.20 , pp. 3575-3582
    • Anderle, M.1    Roy, S.2    Lin, H.3    Becker, C.4    Joho, K.5
  • 9
    • 0242485239 scopus 로고    scopus 로고
    • A universal denoising and peak picking algorithm for LC-MS based on matched filtration in the chromatographic time domain
    • Andreev VP, RejtarT, Chen HS, Moskovets EV, Ivanov AR, Karger BL. 2003. A universal denoising and peak picking algorithm for LC-MS based on matched filtration in the chromatographic time domain. Anal Chem 75:6314-6326.
    • (2003) Anal Chem , vol.75 , pp. 6314-6326
    • Andreev, V.P.1    Rejtar, T.2    Chen, H.S.3    Moskovets, E.V.4    Ivanov, A.R.5    Karger, B.L.6
  • 10
    • 0010686771 scopus 로고
    • A survey and critique of techniques for extracting rules from neural networks
    • Neurocomputing Research Centre Queensland
    • Andrews R, Diederich J, Tickle A. 1995. A survey and critique of techniques for extracting rules from neural networks (Technical Report). Neurocomputing Research Centre Queensland.
    • (1995) Technical Report
    • Andrews, R.1    Diederich, J.2    Tickle, A.3
  • 11
    • 1842559788 scopus 로고    scopus 로고
    • Reproducibility of SELDI-TOF protein patterns in serum: Comparing datasets from different experiments
    • Baggerly KA, Morris JS, Coombes KR. 2004. Reproducibility of SELDI-TOF protein patterns in serum: Comparing datasets from different experiments. Bioinformatics 20:777-785.
    • (2004) Bioinformatics , vol.20 , pp. 777-785
    • Baggerly, K.A.1    Morris, J.S.2    Coombes, K.R.3
  • 12
    • 0141855279 scopus 로고    scopus 로고
    • A comprehensive approach to the analysis of matrix-assisted laser desorption/ionization time of flight proteomics spectra from serum samples
    • Baggerly KA, Morris JS, Wang J, Gold D, Xiao LC, Coombes KR. 2003. A comprehensive approach to the analysis of matrix-assisted laser desorption/ionization time of flight proteomics spectra from serum samples. Proteomics 3:1667-1672.
    • (2003) Proteomics , vol.3 , pp. 1667-1672
    • Baggerly, K.A.1    Morris, J.S.2    Wang, J.3    Gold, D.4    Xiao, L.C.5    Coombes, K.R.6
  • 14
    • 0000585026 scopus 로고
    • Smoothing and differentiation by an adaptive-degree polynomial filter
    • Barak P. 1995. Smoothing and differentiation by an adaptive-degree polynomial filter. Anal Chem 67:2758-2762.
    • (1995) Anal Chem , vol.67 , pp. 2758-2762
    • Barak, P.1
  • 16
    • 1842580753 scopus 로고    scopus 로고
    • Improving large-scale proteomics by clustering of mass spectrometry data
    • Beer I, Barnea E, Ziv T, Admon A. 2004. Improving large-scale proteomics by clustering of mass spectrometry data. Proteomics 4:950-960.
    • (2004) Proteomics , vol.4 , pp. 950-960
    • Beer, I.1    Barnea, E.2    Ziv, T.3    Admon, A.4
  • 18
    • 0033456265 scopus 로고    scopus 로고
    • Reliable automatic protein identification from matrix-assisted laser desorption/ionisation mass spectrometry peptide fingerprints
    • Berndt P, Hobohm U, Langen H. 1999. Reliable automatic protein identification from matrix-assisted laser desorption/ionisation mass spectrometry peptide fingerprints. Electrophoresis 20:2521-2526.
    • (1999) Electrophoresis , vol.20 , pp. 2521-2526
    • Berndt, P.1    Hobohm, U.2    Langen, H.3
  • 19
    • 0033230904 scopus 로고    scopus 로고
    • Toward a clinical molecular scanner for proteome research: Parallel protein chemical processing before and during westernblot
    • Bienvenut WF, Sanchez JC, Karmime A, Rouge V. Rose K, Binz PA, Hochstrasser DF. 1999. Toward a clinical molecular scanner for proteome research: Parallel protein chemical processing before and during westernblot. Anal Chem 71:4800-4807.
    • (1999) Anal Chem , vol.71 , pp. 4800-4807
    • Bienvenut, W.F.1    Sanchez, J.C.2    Karmime, A.3    Rouge, V.4    Rose, K.5    Binz, P.A.6    Hochstrasser, D.F.7
  • 24
    • 1342330535 scopus 로고    scopus 로고
    • Is cross-validation valid for small-sample microarray classification?
    • Braga-Neto U, Dougherty E. 2003. Is cross-validation valid for small-sample microarray classification? Bioinformatics 20:374-380.
    • (2003) Bioinformatics , vol.20 , pp. 374-380
    • Braga-Neto, U.1    Dougherty, E.2
  • 25
    • 0033948589 scopus 로고    scopus 로고
    • Automatic poisson peak harvesting for high throughput protein identification
    • Breen EJ, Hopwood FG, Williams KL, Wilkins MR. 2000. Automatic poisson peak harvesting for high throughput protein identification. Electrophoresis 21:2243-2251.
    • (2000) Electrophoresis , vol.21 , pp. 2243-2251
    • Breen, E.J.1    Hopwood, F.G.2    Williams, K.L.3    Wilkins, M.R.4
  • 26
    • 0030211964 scopus 로고    scopus 로고
    • Bagging predictors
    • Breiman L. 1996. Bagging predictors. Machine Learn 24:123-140.
    • (1996) Machine Learn , vol.24 , pp. 123-140
    • Breiman, L.1
  • 27
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • Breiman L. 2001. Random forests. Machine Learn 45:5-32.
    • (2001) Machine Learn , vol.45 , pp. 5-32
    • Breiman, L.1
  • 29
    • 0030813663 scopus 로고    scopus 로고
    • PARAFAC. Tutorial and applications
    • Bro R. 1997. PARAFAC. Tutorial and applications. Chemom Intell Lab Sys 38:149-171.
    • (1997) Chemom Intell Lab Sys , vol.38 , pp. 149-171
    • Bro, R.1
  • 31
    • 27144489164 scopus 로고    scopus 로고
    • A tutorial on support vector machines for pattern recognition
    • Burges CJC. 1998. A tutorial on support vector machines for pattern recognition. Data Mining Knowledge Discov 2:121-167.
    • (1998) Data Mining Knowledge Discov , vol.2 , pp. 121-167
    • Burges, C.J.C.1
  • 32
    • 0037024701 scopus 로고    scopus 로고
    • Chromatographic alignment by warping and dynamic programming as a preprocessing tool for parafac modelling of liquid chromatography-mass spectrometry data
    • Bylund D, Danielsson R, Malmquist G, Markides KE. 2002. Chromatographic alignment by warping and dynamic programming as a preprocessing tool for parafac modelling of liquid chromatography-mass spectrometry data. J Chromatogr A 961:237-244.
    • (2002) J Chromatogr A , vol.961 , pp. 237-244
    • Bylund, D.1    Danielsson, R.2    Malmquist, G.3    Markides, K.E.4
  • 33
    • 0141855287 scopus 로고    scopus 로고
    • Exploring the proteome with MALDI-TOF
    • Campa M, Fitzgerald M, Patz E. 2003. Exploring the proteome with MALDI-TOF (Editorial). Proteomics 3:1659-1660.
    • (2003) Proteomics , vol.3 , pp. 1659-1660
    • Campa, M.1    Fitzgerald, M.2    Patz, E.3
  • 34
    • 0030466254 scopus 로고    scopus 로고
    • Using matrix convolution filters to extract information from time-of-flight mass spectra
    • Carroll JA, Beavis RC. 1996. Using matrix convolution filters to extract information from time-of-flight mass spectra. Rapid Commun Mass Spectrom 10:1683-1687.
    • (1996) Rapid Commun Mass Spectrom , vol.10 , pp. 1683-1687
    • Carroll, J.A.1    Beavis, R.C.2
  • 36
    • 2942535913 scopus 로고    scopus 로고
    • Running before we can walk?
    • Check E. 2004. Running before we can walk? Nature 429:496-497.
    • (2004) Nature , vol.429 , pp. 496-497
    • Check, E.1
  • 37
    • 0031246430 scopus 로고    scopus 로고
    • Ratio-based decisions and the quantitative analysis of cDNA microarray images
    • Chen Y, Dougherty ER, Bittner ML. 1997. Ratio-based decisions and the quantitative analysis of cDNA microarray images. J Biomedical Optics 2:364-374.
    • (1997) J Biomedical Optics , vol.2 , pp. 364-374
    • Chen, Y.1    Dougherty, E.R.2    Bittner, M.L.3
  • 39
    • 0034662139 scopus 로고    scopus 로고
    • Improved calibration of time-of-flight mass spectra by simplex optimization of electrostatic ion calculations
    • Christian NP, Arnold RJ, Reilly JP. 2000. Improved calibration of time-of-flight mass spectra by simplex optimization of electrostatic ion calculations. Anal Chem 72:3327-3337.
    • (2000) Anal Chem , vol.72 , pp. 3327-3337
    • Christian, N.P.1    Arnold, R.J.2    Reilly, J.P.3
  • 41
    • 0033565832 scopus 로고    scopus 로고
    • Role of accurate mass measurement (+/- 10ppm) in protein identification strategies employing ms or ms/ms and database searching
    • Clauser KR, Baker P, Burlingame AL. 1999. Role of accurate mass measurement (+/- 10ppm) in protein identification strategies employing ms or ms/ms and database searching. Anal Chem 71:2871-2882.
    • (1999) Anal Chem , vol.71 , pp. 2871-2882
    • Clauser, K.R.1    Baker, P.2    Burlingame, A.L.3
  • 42
    • 84936916896 scopus 로고
    • Robust locally weighted regression and smoothing scatterplots
    • Cleaveland WS. 1979. Robust locally weighted regression and smoothing scatterplots. J Amer Statist Assoc 74:829-836.
    • (1979) J Amer Statist Assoc , vol.74 , pp. 829-836
    • Cleaveland, W.S.1
  • 45
    • 0141615786 scopus 로고    scopus 로고
    • Quality control and peak find for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization
    • Coombes KR, Fritsche HA, Clarke C, Chen JN, Baggerly KA, Morris JS, Xiao LC, Hung MC, Kuerer HM. 2003. Quality control and peak find for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization. Clin Chem 49:1615-1623.
    • (2003) Clin Chem , vol.49 , pp. 1615-1623
    • Coombes, K.R.1    Fritsche, H.A.2    Clarke, C.3    Chen, J.N.4    Baggerly, K.A.5    Morris, J.S.6    Xiao, L.C.7    Hung, M.C.8    Kuerer, H.M.9
  • 46
    • 11144340579 scopus 로고    scopus 로고
    • Improved peak detection and quantification of mass spectrometry data acquired from surface-enhanced laser desorption and ionization by denoising spectra with the undecimated discrete wavelet transform
    • The University of Texas M. D. Anderson Cancer Center
    • Coombes KR, Tsavachidis S, Morris JS, Baggerly KA, Hung MC, Kuerer HM. 2004. Improved peak detection and quantification of mass spectrometry data acquired from surface-enhanced laser desorption and ionization by denoising spectra with the undecimated discrete wavelet transform (Technical Report UTMDABTR-001-04). The University of Texas M. D. Anderson Cancer Center.
    • (2004) Technical Report , vol.UTMDABTR-001-04
    • Coombes, K.R.1    Tsavachidis, S.2    Morris, J.S.3    Baggerly, K.A.4    Hung, M.C.5    Kuerer, H.M.6
  • 49
    • 0042367739 scopus 로고    scopus 로고
    • Proteomic patterns in biological fluids: Do they represent the future of cancer diagnostics?
    • Diamandis EP. 2003. Proteomic patterns in biological fluids: Do they represent the future of cancer diagnostics? Clin Chem 49:1272-1275.
    • (2003) Clin Chem , vol.49 , pp. 1272-1275
    • Diamandis, E.P.1
  • 50
    • 1542378202 scopus 로고    scopus 로고
    • Analysis of serum patterns for early cancer diagnosis: Drawing attention to potential problems
    • Diamandis E. 2004. Analysis of serum patterns for early cancer diagnosis: Drawing attention to potential problems. J Natl Cancer Inst 96:353-356.
    • (2004) J Natl Cancer Inst , vol.96 , pp. 353-356
    • Diamandis, E.1
  • 51
    • 0000259511 scopus 로고    scopus 로고
    • Approximate statistical tests for comparing supervised classification learning algorithms
    • Dietterich T. 1998. Approximate statistical tests for comparing supervised classification learning algorithms. Neural Comput 10:1895-2024.
    • (1998) Neural Comput , vol.10 , pp. 1895-2024
    • Dietterich, T.1
  • 55
    • 0004183412 scopus 로고
    • Cross-validation and the boostrap: Estimating the error rate of a prediction rule
    • Departement of Statistics, Standford University
    • Efron B, Tibshirani R. 1995. Cross-validation and the boostrap: Estimating the error rate of a prediction rule (Technical Report TR-477). Departement of Statistics, Standford University.
    • (1995) Technical Report , vol.TR-477
    • Efron, B.1    Tibshirani, R.2
  • 56
    • 0034234766 scopus 로고    scopus 로고
    • Improvements in protein identification by MALDI-TOF-MS peptide mapping
    • Egelhofer V, Bulssow K, Luebbert C, Lehrach H, Nordhoff E. 2000. Improvements in protein identification by MALDI-TOF-MS peptide mapping. Anal Chem 72:2741-2750.
    • (2000) Anal Chem , vol.72 , pp. 2741-2750
    • Egelhofer, V.1    Bulssow, K.2    Luebbert, C.3    Lehrach, H.4    Nordhoff, E.5
  • 58
    • 0347758340 scopus 로고    scopus 로고
    • Parametric time warping
    • Eilers PHC. 2004. Parametric time warping. Anal Chem 76:404-411.
    • (2004) Anal Chem , vol.76 , pp. 404-411
    • Eilers, P.H.C.1
  • 59
    • 0345438685 scopus 로고    scopus 로고
    • ROC graphs: Notes and practical considerations for data mining researchers
    • HP Labs.
    • Fawcett T. 2003. ROC graphs: Notes and practical considerations for data mining researchers (Technical Report). HP Labs.
    • (2003) Technical Report
    • Fawcett, T.1
  • 61
    • 0036684144 scopus 로고    scopus 로고
    • Origin and number of charges observed on multiply-protonated native proteins produced by esi
    • Felitsyn N, Peschke M, Kebarle P. 2002. Origin and number of charges observed on multiply-protonated native proteins produced by esi. Int J Mass Spectrom 219:39-62.
    • (2002) Int J Mass Spectrom , vol.219 , pp. 39-62
    • Felitsyn, N.1    Peschke, M.2    Kebarle, P.3
  • 62
    • 0024438708 scopus 로고
    • Electrospray ionization for mass spectrometry of large biomolecules
    • Fenn JB, Mann M, Meng CP, Wang SF, Whitehouse CM. 1989. Electrospray ionization for mass spectrometry of large biomolecules. Science 246(4926):64-71.
    • (1989) Science , vol.246 , Issue.4926 , pp. 64-71
    • Fenn, J.B.1    Mann, M.2    Meng, C.P.3    Wang, S.F.4    Whitehouse, C.M.5
  • 63
    • 0032965870 scopus 로고    scopus 로고
    • Windowed mass selection method: A new data processing algorithm for liquid chromatography-mass spectrometry data
    • Fleming CM, Kowalski BR, Apffel A, Hancock WS. 1999. Windowed mass selection method: A new data processing algorithm for liquid chromatography-mass spectrometry data. J Chromatogr A 849:71-85.
    • (1999) J Chromatogr A , vol.849 , pp. 71-85
    • Fleming, C.M.1    Kowalski, B.R.2    Apffel, A.3    Hancock, W.S.4
  • 64
    • 0038121709 scopus 로고    scopus 로고
    • Peak alignment of NMR signals by means of a genetic algorithm
    • Forshed J, Schuppe-Koistinen I, Jacobsson SP. 2003. Peak alignment of NMR signals by means of a genetic algorithm. Anal Chim Acta 487:189-199.
    • (2003) Anal Chim Acta , vol.487 , pp. 189-199
    • Forshed, J.1    Schuppe-Koistinen, I.2    Jacobsson, S.P.3
  • 65
    • 0035253474 scopus 로고    scopus 로고
    • Increasing the number of analyzable peaks in comprehensive two-dimensional separations through chemometrics
    • Fraga CG, Bruckner CA, Synovec RE. 2001. Increasing the number of analyzable peaks in comprehensive two-dimensional separations through chemometrics. Anal Chem 73:675-683.
    • (2001) Anal Chem , vol.73 , pp. 675-683
    • Fraga, C.G.1    Bruckner, C.A.2    Synovec, R.E.3
  • 66
    • 0031211090 scopus 로고    scopus 로고
    • A decision theoretical generalization of on-line learning and an application to boosting
    • Freund Y, Schapire R. 1997. A decision theoretical generalization of on-line learning and an application to boosting. J Comput Syst Sci 55:119-139.
    • (1997) J Comput Syst Sci , vol.55 , pp. 119-139
    • Freund, Y.1    Schapire, R.2
  • 67
    • 0036130648 scopus 로고    scopus 로고
    • Proteinchip clinical proteomics: Computationalb challenges and solutions
    • Fung E, Enderwick C. 2002. Proteinchip clinical proteomics: Computationalb challenges and solutions. Comput Proteomics Suppl 32:S34-S41.
    • (2002) Comput Proteomics Suppl , vol.32
    • Fung, E.1    Enderwick, C.2
  • 68
    • 0033405276 scopus 로고    scopus 로고
    • Modelling peptide mass fingerprinting data using the atomic composition of peptides
    • Gay S, Binz PA, Hochstrasser DF, Appel RD. 1999. Modelling peptide mass fingerprinting data using the atomic composition of peptides. Electrophoresis 20:3527-3534.
    • (1999) Electrophoresis , vol.20 , pp. 3527-3534
    • Gay, S.1    Binz, P.A.2    Hochstrasser, D.F.3    Appel, R.D.4
  • 69
    • 0041859530 scopus 로고    scopus 로고
    • Preprocessing of tandem mass spectrometric data to support automatic protein identification
    • Gentzel M, Köcher T, Ponnusamy S, Wilm M. 2003. Preprocessing of tandem mass spectrometric data to support automatic protein identification. Proteomics 3:1597-1610.
    • (2003) Proteomics , vol.3 , pp. 1597-1610
    • Gentzel, M.1    Köcher, T.2    Ponnusamy, S.3    Wilm, M.4
  • 70
    • 0036683169 scopus 로고    scopus 로고
    • A calibration method that simplifies and improves accurate determination of peptide molecular masses by MALDI-TOF MS
    • Gobom J, Mueller M, Egelhofer V, Theiss D, Lehrach H, Nordhof E. 2002. A calibration method that simplifies and improves accurate determination of peptide molecular masses by MALDI-TOF MS. Anal Chem 74:3915-3923.
    • (2002) Anal Chem , vol.74 , pp. 3915-3923
    • Gobom, J.1    Mueller, M.2    Egelhofer, V.3    Theiss, D.4    Lehrach, H.5    Nordhof, E.6
  • 71
    • 1242294364 scopus 로고    scopus 로고
    • Result-driven strategies for protein identification and quantitation - A way to optimize experimental design and derive reliable results
    • Graber A, Juhasz PS, Khainovski N, Parker KC, Patterson DH, Martin SA. 2004. Result-driven strategies for protein identification and quantitation - A way to optimize experimental design and derive reliable results. Proteomics 4:474-489.
    • (2004) Proteomics , vol.4 , pp. 474-489
    • Graber, A.1    Juhasz, P.S.2    Khainovski, N.3    Parker, K.C.4    Patterson, D.H.5    Martin, S.A.6
  • 74
    • 0000664678 scopus 로고
    • Characterization of overlapped chromatographic peaks by their second derivative. the limit of the method
    • Grushka E, Israeli D. 1990. Characterization of overlapped chromatographic peaks by their second derivative. The limit of the method. Anal Chem 62 :717-721.
    • (1990) Anal Chem , vol.62 , pp. 717-721
    • Grushka, E.1    Israeli, D.2
  • 75
    • 0036161259 scopus 로고    scopus 로고
    • Gene selection for cancer classification using support vector machines
    • Guyon I, Weston J, Barnhill S, Vapnik V. 2002. Gene selection for cancer classification using support vector machines. Machine Learn 46:389-422.
    • (2002) Machine Learn , vol.46 , pp. 389-422
    • Guyon, I.1    Weston, J.2    Barnhill, S.3    Vapnik, V.4
  • 77
    • 0242410408 scopus 로고    scopus 로고
    • Benchmarking attribute selection techniques for discrete data class data mining
    • Hall M, Holmes G. 2003. Benchmarking attribute selection techniques for discrete data class data mining. IEEE Transac Knowledge Data Eng 15:1437-1447.
    • (2003) IEEE Transac Knowledge Data Eng , vol.15 , pp. 1437-1447
    • Hall, M.1    Holmes, G.2
  • 79
    • 0036008574 scopus 로고    scopus 로고
    • New algorithms for processing and peak detection in liquid chromatography/mass spectrometry data
    • Hastings CA, Norton SM, Roy S. 2002. New algorithms for processing and peak detection in liquid chromatography/mass spectrometry data. Rapid Commun Mass Spectrom 16:462-467.
    • (2002) Rapid Commun Mass Spectrom , vol.16 , pp. 462-467
    • Hastings, C.A.1    Norton, S.M.2    Roy, S.3
  • 80
    • 0035931947 scopus 로고    scopus 로고
    • Gene expression profiles in hereditary breast cancer
    • Hedenfalk I, Duggan D, Chen Y, et al. MR. 2001. Gene expression profiles in hereditary breast cancer. N Engl J Med 344:539-548.
    • (2001) N Engl J Med , vol.344 , pp. 539-548
    • Hedenfalk, I.1    Duggan, D.2    Chen, Y.3
  • 81
    • 0141743613 scopus 로고    scopus 로고
    • Machine learning approaches to lung cancer prediction from mass spectra
    • Hilario M, Kalousis A, Muller M, Pellegrini C. 2003. Machine learning approaches to lung cancer prediction from mass spectra. Proteomics 3:1716-1719.
    • (2003) Proteomics , vol.3 , pp. 1716-1719
    • Hilario, M.1    Kalousis, A.2    Muller, M.3    Pellegrini, C.4
  • 82
    • 0036690521 scopus 로고    scopus 로고
    • Comparing three methods for variance estimation with duplicated high density oligonucleotide arrays
    • Huang X, Pan W. 2002. Comparing three methods for variance estimation with duplicated high density oligonucleotide arrays. Funct Integr Genomics 2:126-133.
    • (2002) Funct Integr Genomics , vol.2 , pp. 126-133
    • Huang, X.1    Pan, W.2
  • 83
    • 11244346557 scopus 로고    scopus 로고
    • Variance stabilization applied to microarray data calibration and to the quantification of differential expression
    • Huber W, vonHeydebreck A, Sultmann H, Poustka A, Vingron M. 2002. Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 18:S96-S104.
    • (2002) Bioinformatics , vol.18
    • Huber, W.1    Vonheydebreck, A.2    Sultmann, H.3    Poustka, A.4    Vingron, M.5
  • 84
    • 2942513120 scopus 로고    scopus 로고
    • Application of the Random Forest classification algorithm to a SELDI-TOF proteomics study in the setting of a cancer prevention trial
    • Izmirlian G. 2004. Application of the Random Forest classification algorithm to a SELDI-TOF proteomics study in the setting of a cancer prevention trial. Ann NY Acad Sci 1020:154-174.
    • (2004) Ann NY Acad Sci , vol.1020 , pp. 154-174
    • Izmirlian, G.1
  • 85
    • 0142179210 scopus 로고    scopus 로고
    • Local-pooled-error test for identifying differentially expressed genes with a small number of replicated microarrays
    • Jain N, Thatte J, Braciale T, Ley K, O'Connell M, Lee JK. 2003. Local-pooled-error test for identifying differentially expressed genes with a small number of replicated microarrays. Bioinformatics 19:1945-1951.
    • (2003) Bioinformatics , vol.19 , pp. 1945-1951
    • Jain, N.1    Thatte, J.2    Braciale, T.3    Ley, K.4    O'Connell, M.5    Lee, J.K.6
  • 87
    • 0038697673 scopus 로고    scopus 로고
    • High-speed peak matching algorithm for retention time alignment of gas chromatographic data for chemometric analysis
    • Johnson KJ, Wright BW, Jarman KH, Synovec RE. 2003. High-speed peak matching algorithm for retention time alignment of gas chromatographic data for chemometric analysis. J Chromatogr A 996:141-155.
    • (2003) J Chromatogr A , vol.996 , pp. 141-155
    • Johnson, K.J.1    Wright, B.W.2    Jarman, K.H.3    Synovec, R.E.4
  • 90
    • 0024289037 scopus 로고
    • Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons
    • Karas M, Hillenkamp F. 1988. Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons. Anal Chem 60:2299-2301.
    • (1988) Anal Chem , vol.60 , pp. 2299-2301
    • Karas, M.1    Hillenkamp, F.2
  • 91
    • 0001718376 scopus 로고    scopus 로고
    • PARAFAC2 Pan i. A direct fitting algorithm for the PARAFAC2 model
    • Kiers HAL. tenBerge JMF, Bro R. 1999. PARAFAC2 Pan i. A direct fitting algorithm for the PARAFAC2 model. J Chemometrics 13:275-294.
    • (1999) J Chemometrics , vol.13 , pp. 275-294
    • Kiers, H.A.L.1    TenBerge, J.M.F.2    Bro, R.3
  • 93
    • 0027002164 scopus 로고
    • The feature selection problem: Traditional methods and a new algorithm
    • Kira K, Rendell L. 1992. The feature selection problem: Traditional methods and a new algorithm. Proc Natl Conf Artif Intell (AAAI-92). 129-134.
    • (1992) Proc Natl Conf Artif Intell (AAAI-92) , pp. 129-134
    • Kira, K.1    Rendell, L.2
  • 94
    • 85164392958 scopus 로고
    • A study of cross-validation and bootstrap for accuracy estimation and model selection
    • Morgan Kaufman
    • Kohavi R. 1995. A study of cross-validation and bootstrap for accuracy estimation and model selection. Proceedings of the 14th International Joint Conference on AI. Morgan Kaufman.
    • (1995) Proceedings of the 14th International Joint Conference on AI
    • Kohavi, R.1
  • 95
    • 0031381525 scopus 로고    scopus 로고
    • Wrappers for feature subset selection
    • Kohavi R. John GH. 1997. Wrappers for feature subset selection. Artif Intell 97:273-324.
    • (1997) Artif Intell , vol.97 , pp. 273-324
    • Kohavi, R.1    John, G.H.2
  • 99
    • 0142027764 scopus 로고    scopus 로고
    • Identification of biomarkers for ovarian cancer using strong anion-exchange proteinchips: Potential use in diagnosis and prognosis
    • Kozak K, Amneus M, Pusey S, Su F, Luong M, Luong S, Reddy S, Farias-Eisner R. 2003. Identification of biomarkers for ovarian cancer using strong anion-exchange proteinchips: Potential use in diagnosis and prognosis. Proc Natl Acad Sci USA 100:12343-12348.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 12343-12348
    • Kozak, K.1    Amneus, M.2    Pusey, S.3    Su, F.4    Luong, M.5    Luong, S.6    Reddy, S.7    Farias-Eisner, R.8
  • 100
    • 0031871699 scopus 로고    scopus 로고
    • Suppression effects in enzymatic peptide ladder sequencing using ultraviolet - Matrix assisted laser desorption/ionization - Mass spectormetry
    • Kratzer R, Eckerskorn C, Karas M, Lottspeich F. 1998. Suppression effects in enzymatic peptide ladder sequencing using ultraviolet - Matrix assisted laser desorption/ionization - Mass spectormetry. Electrophor-esis 19:1910-1919.
    • (1998) Electrophor-esis , vol.19 , pp. 1910-1919
    • Kratzer, R.1    Eckerskorn, C.2    Karas, M.3    Lottspeich, F.4
  • 101
    • 4544270574 scopus 로고    scopus 로고
    • DNA microarray normalization methods can remove bias from differential protein expression analysis of 2d difference gel electrophoresis results
    • Kreil DP, Karp NA, Lilley KS. 2004. DNA microarray normalization methods can remove bias from differential protein expression analysis of 2d difference gel electrophoresis results. Bioinformatics 20:2026-2034.
    • (2004) Bioinformatics , vol.20 , pp. 2026-2034
    • Kreil, D.P.1    Karp, N.A.2    Lilley, K.S.3
  • 102
    • 0036110823 scopus 로고    scopus 로고
    • On the nature of the chemical noise in MALDI mass spectra
    • Krutchinsky AN, Chait BT. 2002. On the nature of the chemical noise in MALDI mass spectra. J Am Soc Mass Spectrom 13:129-134.
    • (2002) J Am Soc Mass Spectrom , vol.13 , pp. 129-134
    • Krutchinsky, A.N.1    Chait, B.T.2
  • 104
    • 0008591857 scopus 로고
    • Noise reduction of gas chromatography/mass spectrometry data using principal component analysis
    • Lee TA, Headley LM, Hardy JK, 1991. Noise reduction of gas chromatography/mass spectrometry data using principal component analysis. Anal Chem 63:357-360.
    • (1991) Anal Chem , vol.63 , pp. 357-360
    • Lee, T.A.1    Headley, L.M.2    Hardy, J.K.3
  • 105
    • 0141855283 scopus 로고    scopus 로고
    • Megavariate data analysis of mass spectrometric proteomics data using latent variable projection method
    • Lee KR, Lin X, Park DC. Eslava S. 2003. Megavariate data analysis of mass spectrometric proteomics data using latent variable projection method. Proteomics 3:1680-1686.
    • (2003) Proteomics , vol.3 , pp. 1680-1686
    • Lee, K.R.1    Lin, X.2    Park, D.C.3    Eslava, S.4
  • 106
    • 0001431741 scopus 로고    scopus 로고
    • Development and evaluation of flexible empirical peak functions for processing chromatographic peaks
    • Li J. 1997. Development and evaluation of flexible empirical peak functions for processing chromatographic peaks. Anal Chem 69:4452-4462.
    • (1997) Anal Chem , vol.69 , pp. 4452-4462
    • Li, J.1
  • 107
    • 0036324715 scopus 로고    scopus 로고
    • Proteomics and bioinformatics approaches for identification of serum biomarkers to detect breast cancer
    • Li J, Zhang Z, Rosenzweig J, Wang YY, Chan DW. 2002. Proteomics and bioinformatics approaches for identification of serum biomarkers to detect breast cancer. Clin Chem 48:1296-1304.
    • (2002) Clin Chem , vol.48 , pp. 1296-1304
    • Li, J.1    Zhang, Z.2    Rosenzweig, J.3    Wang, Y.Y.4    Chan, D.W.5
  • 108
    • 7244225752 scopus 로고    scopus 로고
    • Discovery of significant rules for classifying cancer diagnosis data
    • Li J, Liu H, Ng SK, Wong L. 2003. Discovery of significant rules for classifying cancer diagnosis data. Bioinformatics 19:ii93-ii102.
    • (2003) Bioinformatics , vol.19
    • Li, J.1    Liu, H.2    Ng, S.K.3    Wong, L.4
  • 109
    • 3543076921 scopus 로고    scopus 로고
    • Application of the GA/KNN method to SELDI proteomics data
    • Li L, Umbach DM, Terry P, Taylor JA. 2004. Application of the GA/KNN method to SELDI proteomics data. Bioinformatics 20:1638-1640.
    • (2004) Bioinformatics , vol.20 , pp. 1638-1640
    • Li, L.1    Umbach, D.M.2    Terry, P.3    Taylor, J.A.4
  • 110
    • 0742269626 scopus 로고    scopus 로고
    • Probabilistic disease classification of expression-dependent proteomic data from mass spectrometry of human serum
    • Lilien RH, Fand H, Donald BR. 2003. Probabilistic disease classification of expression-dependent proteomic data from mass spectrometry of human serum. J Comput Biol 10:925-946.
    • (2003) J Comput Biol , vol.10 , pp. 925-946
    • Lilien, R.H.1    Fand, H.2    Donald, B.R.3
  • 111
    • 0038021028 scopus 로고    scopus 로고
    • A comparative study on feature selection and classification methods using gene expression profiles and proteomic patterns
    • Liu H, Li J, Wong L. 2002. A comparative study on feature selection and classification methods using gene expression profiles and proteomic patterns. Genome Inform 13:51-60.
    • (2002) Genome Inform , vol.13 , pp. 51-60
    • Liu, H.1    Li, J.2    Wong, L.3
  • 112
    • 0028578203 scopus 로고
    • Multivariate evaluation of peptide mapping using the entire chromatographic profile
    • Malmquist G. 1994. Multivariate evaluation of peptide mapping using the entire chromatographic profile. J Chromatogr A 687:89-100.
    • (1994) J Chromatogr A , vol.687 , pp. 89-100
    • Malmquist, G.1
  • 113
    • 4243889151 scopus 로고
    • Interpreting mass spectra of multiply charged ions
    • Mann M, Meng CK, Fenn JB. 1989. Interpreting mass spectra of multiply charged ions. Anal Chem 61:1702-1708.
    • (1989) Anal Chem , vol.61 , pp. 1702-1708
    • Mann, M.1    Meng, C.K.2    Fenn, J.B.3
  • 114
    • 2642532720 scopus 로고    scopus 로고
    • Decoding two-dimensional complex multicomponent separations by autocovariance function
    • Marchetti N, Felinger A, Pasti L. Pietrogrande MC, Dondi F. 2004. Decoding two-dimensional complex multicomponent separations by autocovariance function. Anal Chem 76:3055-3068.
    • (2004) Anal Chem , vol.76 , pp. 3055-3068
    • Marchetti, N.1    Felinger, A.2    Pasti, L.3    Pietrogrande, M.C.4    Dondi, F.5
  • 115
    • 11244333072 scopus 로고    scopus 로고
    • Statistical process control for large scale microarray experiments
    • Model F, Konig T. Piepenbrock C, Adorjan P. 2002. Statistical process control for large scale microarray experiments. Bioinformatics 18:S155-S163.
    • (2002) Bioinformatics , vol.18
    • Model, F.1    Konig, T.2    Piepenbrock, C.3    Adorjan, P.4
  • 116
    • 0036535033 scopus 로고    scopus 로고
    • Regularization, maximum entropy and probabilistic methods in mass spectrometry data processing problems
    • Mohammad-Djafari A, Giovannelli J, Demoment G, Idier J. 2002. Regularization, maximum entropy and probabilistic methods in mass spectrometry data processing problems. Int J Mass Spectrom 215:175-193.
    • (2002) Int J Mass Spectrom , vol.215 , pp. 175-193
    • Mohammad-Djafari, A.1    Giovannelli, J.2    Demoment, G.3    Idier, J.4
  • 117
    • 0029455157 scopus 로고
    • Application of sequential paired covariance to capillary electrophoresis electrospray ionization time-of-flight mass spectrometry: Unraveling the signal from the noise in the electropherogram
    • Muddiman DC, Rockwood AL, Gao Q, Severs JC, Udseth HR, Smith RD. 1995. Application of sequential paired covariance to capillary electrophoresis electrospray ionization time-of-flight mass spectrometry: Unraveling the signal from the noise in the electropherogram. Anal Chem 67:4371-4375.
    • (1995) Anal Chem , vol.67 , pp. 4371-4375
    • Muddiman, D.C.1    Rockwood, A.L.2    Gao, Q.3    Severs, J.C.4    Udseth, H.R.5    Smith, R.D.6
  • 118
    • 33646264600 scopus 로고    scopus 로고
    • Geneva: Doctoral dissertation University of Geneva
    • Muller M. 2003. Molecular scanner data analysis. Geneva: Doctoral dissertation University of Geneva.
    • (2003) Molecular Scanner Data Analysis
    • Muller, M.1
  • 120
    • 0036808064 scopus 로고    scopus 로고
    • Improving protein identification for a molecular scanner experiment with human plasma by using correlations between spectra
    • Muller M, Gras R, Binz PA, Hochstrasser DF, Appel RD. 2002b. Improving protein identification for a molecular scanner experiment with human plasma by using correlations between spectra. Proteomics 2:1413-1425.
    • (2002) Proteomics , vol.2 , pp. 1413-1425
    • Muller, M.1    Gras, R.2    Binz, P.A.3    Hochstrasser, D.F.4    Appel, R.D.5
  • 121
    • 0141520575 scopus 로고    scopus 로고
    • Generalizable mass spectrometry mining used to identify disease state biomarkers from blood serum
    • Neville P Tan PY, Mann G. Wolfinger R. 2003. Generalizable mass spectrometry mining used to identify disease state biomarkers from blood serum. Proteomics 3:1710-1715.
    • (2003) Proteomics , vol.3 , pp. 1710-1715
    • Neville, P.1    Tan, P.Y.2    Mann, G.3    Wolfinger, R.4
  • 122
    • 0032076034 scopus 로고    scopus 로고
    • Aligning of single and multiple wavelength chromatographic profiles for chemometric data analysis using correlation optimised warping
    • Nielsen NPV, Carstensen JM, Smedsgaard J. 1998. Aligning of single and multiple wavelength chromatographic profiles for chemometric data analysis using correlation optimised warping. J Chromatogr A 805: 17-35.
    • (1998) J Chromatogr A , vol.805 , pp. 17-35
    • Nielsen, N.P.V.1    Carstensen, J.M.2    Smedsgaard, J.3
  • 123
    • 0035566328 scopus 로고    scopus 로고
    • Automatic analysis of hydrogen/ deuterium exchange mass spectra of peptides and proteins using calculations of isotopic distributions
    • Palmblad M, Buijs J, Hakansson P. 2001. Automatic analysis of hydrogen/ deuterium exchange mass spectra of peptides and proteins using calculations of isotopic distributions. J Am Soc Mass Spectrom 12: 1153-1162.
    • (2001) J Am Soc Mass Spectrom , vol.12 , pp. 1153-1162
    • Palmblad, M.1    Buijs, J.2    Hakansson, P.3
  • 125
    • 7544223646 scopus 로고    scopus 로고
    • Optical detection methods for mass spectrometry of macroions
    • Peng WP, Cai Y, Chang HC. 2004. Optical detection methods for mass spectrometry of macroions. Mass Spectrom Rev 23:443-465.
    • (2004) Mass Spectrom Rev , vol.23 , pp. 443-465
    • Peng, W.P.1    Cai, Y.2    Chang, H.C.3
  • 126
    • 0442293872 scopus 로고
    • Receiver operating characteristic methodology
    • Pepe MS. 1995. Receiver operating characteristic methodology. J Am Slat Assoc 95:308-311.
    • (1995) J Am Slat Assoc , vol.95 , pp. 308-311
    • Pepe, M.S.1
  • 127
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins DN, Pappin DJC, Creasy DM, Cottrell JS. 1999. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20:3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.C.2    Creasy, D.M.3    Cottrell, J.S.4
  • 128
    • 0042868833 scopus 로고    scopus 로고
    • The vision of a new diagnostic paradigm
    • Petricoin E, Liotta LA. 2003. The vision of a new diagnostic paradigm. Clin Chem 49:1276-1278.
    • (2003) Clin Chem , vol.49 , pp. 1276-1278
    • Petricoin, E.1    Liotta, L.A.2
  • 130
    • 0242417513 scopus 로고    scopus 로고
    • Comprehensive proteomic profiling identifies serum proteomic signatures for detection of hepatocellular carcinoma and its subtypes
    • Poon T, Yip TT, Chan A, Yip C, Yip V, Mok T, Lee C, Leung T, Ho S, Johnson PJ. 2003. Comprehensive proteomic profiling identifies serum proteomic signatures for detection of hepatocellular carcinoma and its subtypes. Clin Chem 49:752-760.
    • (2003) Clin Chem , vol.49 , pp. 752-760
    • Poon, T.1    Yip, T.T.2    Chan, A.3    Yip, C.4    Yip, V.5    Mok, T.6    Lee, C.7    Leung, T.8    Ho, S.9    Johnson, P.J.10
  • 131
    • 1842836417 scopus 로고    scopus 로고
    • Robustness of the Chen-Dougherty-Bittner procedure against non-normality and heterogeneity in the coefficient of variation
    • Powell DA, Andersen LM, Cheng RYS, Alvord WG. 2002. Robustness of the Chen-Dougherty-Bittner procedure against non-normality and heterogeneity in the coefficient of variation. J Biomedical Optics 7:650-660.
    • (2002) J Biomedical Optics , vol.7 , pp. 650-660
    • Powell, D.A.1    Andersen, L.M.2    Cheng, R.Y.S.3    Alvord, W.G.4
  • 134
    • 0035283313 scopus 로고    scopus 로고
    • Robust classification for imprecise environments
    • Provost F, Fawcett T. 2001. Robust classification for imprecise environments. Machine Learn 42:203-231.
    • (2001) Machine Learn , vol.42 , pp. 203-231
    • Provost, F.1    Fawcett, T.2
  • 135
    • 0141743615 scopus 로고    scopus 로고
    • Discriminant models for high-throughput proteomics mass spectrometer data
    • Purohit PV, Rocke DM. 2003. Discriminant models for high-throughput proteomics mass spectrometer data. Proteomics 3:1699-1703.
    • (2003) Proteomics , vol.3 , pp. 1699-1703
    • Purohit, P.V.1    Rocke, D.M.2
  • 136
    • 0036791428 scopus 로고    scopus 로고
    • Boosted decision tree analysis of surface-enhanced laser desorption/ionization mass spectral serum profiles discriminates prostate cancer from noncancer patients
    • Qu Y, Adam BL, Yasui Y, Ward MD, Cazares LH, Schellhammer PF, Fend Z, Semmes OJ, Wright GL Jr. 2002. Boosted decision tree analysis of surface-enhanced laser desorption/ionization mass spectral serum profiles discriminates prostate cancer from noncancer patients. Clin Chem 48:1835-1843.
    • (2002) Clin Chem , vol.48 , pp. 1835-1843
    • Qu, Y.1    Adam, B.L.2    Yasui, Y.3    Ward, M.D.4    Cazares, L.H.5    Schellhammer, P.F.6    Fend, Z.7    Semmes, O.J.8    Wright Jr., G.L.9
  • 139
    • 0001941003 scopus 로고
    • Comparing connectionist and symbolic learning methods
    • Hanson SJ, Drastal GA, Rivest RL, editors
    • Quinlan JR. 1994. Comparing connectionist and symbolic learning methods. In: Hanson SJ, Drastal GA, Rivest RL, editors. Computational learning theory and natural learning systems. Vol. I. chapter 15. Cambridge, MA: MIT Press. p 446-456.
    • (1994) Computational Learning Theory and Natural Learning Systems , vol.15 , pp. 446-456
    • Quinlan, J.R.1
  • 141
    • 0000796755 scopus 로고
    • Electrospray ionisation mass spectrometry: Deconvolution by an entropy-based algorithm
    • Reinhold BB, Reinhold VN. 1992. Electrospray ionisation mass spectrometry: Deconvolution by an entropy-based algorithm. J Am Soc Mass Spectrom 3:207-215.
    • (1992) J Am Soc Mass Spectrom , vol.3 , pp. 207-215
    • Reinhold, B.B.1    Reinhold, V.N.2
  • 142
    • 0029358759 scopus 로고
    • Rapid calculation of isotope distributions
    • Rockwood AL, Orden SLV, Smith RD. 1995. Rapid calculation of isotope distributions. Anal Chem 67:2699-2704.
    • (1995) Anal Chem , vol.67 , pp. 2699-2704
    • Rockwood, A.L.1    Orden, S.L.V.2    Smith, R.D.3
  • 143
    • 0030180572 scopus 로고    scopus 로고
    • Ultrahigh-speed calculation of isotope distributions
    • Rockwood AL, Orden SLV. 1996. Ultrahigh-speed calculation of isotope distributions. Anal Chem 68:2027-2030.
    • (1996) Anal Chem , vol.68 , pp. 2027-2030
    • Rockwood, A.L.1    Orden, S.L.V.2
  • 144
    • 0142250869 scopus 로고    scopus 로고
    • Proteomic profiling of urinary proteins in renal cancer by surface enhanced laser desorption ionization and neural-network analysis: Identification of key issues affecting potential clinical utility
    • Rogers MA, Clarke P, Noble J, Munro NP, Paul A, Selby PJ, Banks RF. 2003. Proteomic profiling of urinary proteins in renal cancer by surface enhanced laser desorption ionization and neural-network analysis: Identification of key issues affecting potential clinical utility. Cancer Res 63:6971-6983.
    • (2003) Cancer Res , vol.63 , pp. 6971-6983
    • Rogers, M.A.1    Clarke, P.2    Noble, J.3    Munro, N.P.4    Paul, A.5    Selby, P.J.6    Banks, R.F.7
  • 146
    • 12344287002 scopus 로고    scopus 로고
    • Modular, scriptable, and automated analysis tools for high-throughput peptide mass fingerprinting
    • Samuelsson J, Dalevi D, Levander F, Rognvaldsson T. 2004. Modular, scriptable, and automated analysis tools for high-throughput peptide mass fingerprinting. Bioinformatics 20:3628-3635.
    • (2004) Bioinformatics , vol.20 , pp. 3628-3635
    • Samuelsson, J.1    Dalevi, D.2    Levander, F.3    Rognvaldsson, T.4
  • 148
    • 0042553279 scopus 로고
    • Smoothing and differentiation of data by simplified least squares procedure
    • Savitzky A, Golay M. 1964. Smoothing and differentiation of data by simplified least squares procedure. Anal Chem 36:1627-1639.
    • (1964) Anal Chem , vol.36 , pp. 1627-1639
    • Savitzky, A.1    Golay, M.2
  • 149
    • 0042386237 scopus 로고    scopus 로고
    • Iterative data analysis is the key for exhaustive analysis of peptide mass fingerprints from proteins separated by two-dimensional electrophoresis
    • Schmidt F, Schmid M, Jungblut PR, Mattow J, Facius A, Pleissner KP. 2003. Iterative data analysis is the key for exhaustive analysis of peptide mass fingerprints from proteins separated by two-dimensional electrophoresis. J Am Soc Mass Spectrom 14:943-956.
    • (2003) J Am Soc Mass Spectrom , vol.14 , pp. 943-956
    • Schmidt, F.1    Schmid, M.2    Jungblut, P.R.3    Mattow, J.4    Facius, A.5    Pleissner, K.P.6
  • 152
    • 58149208985 scopus 로고
    • Automated assignement of charge states from resolved isotopic peaks for multiply charged ions
    • Senko MW, Beu SC, McLafferty FW. 1995. Automated assignement of charge states from resolved isotopic peaks for multiply charged ions. J Am Soc Mass Spectrom 6:52-56.
    • (1995) J Am Soc Mass Spectrom , vol.6 , pp. 52-56
    • Senko, M.W.1    Beu, S.C.2    McLafferty, F.W.3
  • 153
    • 2542496797 scopus 로고    scopus 로고
    • High-throughput automated post-processing of separation data
    • Shackmana JG, Watson CJ, Kennedy RT. 2004. High-throughput automated post-processing of separation data. J Chromatogr A 1040:273-282.
    • (2004) J Chromatogr A , vol.1040 , pp. 273-282
    • Shackmana, J.G.1    Watson, C.J.2    Kennedy, R.T.3
  • 154
  • 155
    • 0000971830 scopus 로고    scopus 로고
    • Quantitative determination of the components in overlapping chromatographic peaks using wavelet transform
    • Shao XG, Cai W, Sun P, Zhang M, Zhao G. 1997. Quantitative determination of the components in overlapping chromatographic peaks using wavelet transform. Anal Chem 69:1722-1725.
    • (1997) Anal Chem , vol.69 , pp. 1722-1725
    • Shao, X.G.1    Cai, W.2    Sun, P.3    Zhang, M.4    Zhao, G.5
  • 156
    • 0032578463 scopus 로고    scopus 로고
    • Counting individual sulfur atoms in a protein by ultrahigh-resolution fourier transform ion cyclotron resonance mass spectrometry: Experimental resolution of isotopic fine structure of proteins
    • Shi SDH, Hendrickson CL, Marshall AG. 1998. Counting individual sulfur atoms in a protein by ultrahigh-resolution fourier transform ion cyclotron resonance mass spectrometry: Experimental resolution of isotopic fine structure of proteins. Proc Natl Acad Sci USA 95:11532-11537.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 11532-11537
    • Shi, S.D.H.1    Hendrickson, C.L.2    Marshall, A.G.3
  • 157
    • 0037245343 scopus 로고    scopus 로고
    • Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification
    • Simon R, Radmacher M, Dobbin K, McShane LM. 2003. Pitfalls in the use of DNA microarray data for diagnostic and prognostic classification. J Natl Cancer Inst 95:14-18.
    • (2003) J Natl Cancer Inst , vol.95 , pp. 14-18
    • Simon, R.1    Radmacher, M.2    Dobbin, K.3    McShane, L.M.4
  • 159
    • 0042923097 scopus 로고    scopus 로고
    • Class prediction and discovery using gene microarray and proteomics mass spectroscopy data: Curses, caveats, cautions
    • Somorjai RL, Dolenko B, Baumgartner R. 2003. Class prediction and discovery using gene microarray and proteomics mass spectroscopy data: Curses, caveats, cautions. Bioinformatics 19:1484-1491.
    • (2003) Bioinformatics , vol.19 , pp. 1484-1491
    • Somorjai, R.L.1    Dolenko, B.2    Baumgartner, R.3
  • 160
    • 0347181849 scopus 로고    scopus 로고
    • A data review and re-assessment of ovarian cancer serum proteomic profiling
    • Sorace JM, Zhan M. 2003. A data review and re-assessment of ovarian cancer serum proteomic profiling. BMC Bioinformatics 4:24.
    • (2003) BMC Bioinformatics , vol.4 , pp. 24
    • Sorace, J.M.1    Zhan, M.2
  • 161
    • 1542328941 scopus 로고    scopus 로고
    • Mass spectrometric phenotyping of Val34Leu polymorphism of blood coagulation factor XIII by differential peptide display
    • Tammen H, Mohring T, Kellmann M, Pich A, Kreipe HH, Hess R. 2004. Mass spectrometric phenotyping of Val34Leu polymorphism of blood coagulation factor XIII by differential peptide display. Clin Chem 50:545-551.
    • (2004) Clin Chem , vol.50 , pp. 545-551
    • Tammen, H.1    Mohring, T.2    Kellmann, M.3    Pich, A.4    Kreipe, H.H.5    Hess, R.6
  • 162
    • 4744360988 scopus 로고    scopus 로고
    • Charge competition and the linear dynamic range of detection in electrospray ionization mass spectrometry
    • Tang K, Page JS, Smith RD. 2004. Charge competition and the linear dynamic range of detection in electrospray ionization mass spectrometry. J Am Soc Mass Spectrom 15:1416-1423.
    • (2004) J Am Soc Mass Spectrom , vol.15 , pp. 1416-1423
    • Tang, K.1    Page, J.S.2    Smith, R.D.3
  • 163
    • 0037076272 scopus 로고    scopus 로고
    • Diagnosis of multiple cancer types by shrunken centroids of gene expression
    • Tibshirani R, Hastie T, Narasimhan B, Chu G. 2002. Diagnosis of multiple cancer types by shrunken centroids of gene expression. Proc Nat Acad Sci USA 99:6567-6572.
    • (2002) Proc Nat Acad Sci USA , vol.99 , pp. 6567-6572
    • Tibshirani, R.1    Hastie, T.2    Narasimhan, B.3    Chu, G.4
  • 165
    • 0027304920 scopus 로고
    • Tightening the clinical trial
    • Tukey JW. 1992. Tightening the clinical trial. Control Clin Trials 14:266-285.
    • (1992) Control Clin Trials , vol.14 , pp. 266-285
    • Tukey, J.W.1
  • 166
    • 0001860949 scopus 로고
    • Technical note: Bias and the quantification of stability
    • Turney P. 1995. Technical note: Bias and the quantification of stability. Machine Learn 20:23-23.
    • (1995) Machine Learn , vol.20 , pp. 23-23
    • Turney, P.1
  • 167
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher VG, Tibshirani R, Chu G. 2001. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 98:5116-5121.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 169
    • 14744293536 scopus 로고    scopus 로고
    • Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra
    • Venable JD, Dong MQ, Wohlschlegel J, Dillin A, Yates JR III. 2004. Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra. Nature Methods 1:39-45.
    • (2004) Nature Methods , vol.1 , pp. 39-45
    • Venable, J.D.1    Dong, M.Q.2    Wohlschlegel, J.3    Dillin, A.4    Yates III, J.R.5
  • 170
    • 0032232235 scopus 로고    scopus 로고
    • Resolution and mass accuracy in matrix-assisted laser desorption ionization time-of-flight
    • Vestal M, Juhash P. 1998. Resolution and mass accuracy in matrix-assisted laser desorption ionization time-of-flight. J Am Soc Mass Spectrom 9:892-911.
    • (1998) J Am Soc Mass Spectrom , vol.9 , pp. 892-911
    • Vestal, M.1    Juhash, P.2
  • 171
    • 0141631754 scopus 로고    scopus 로고
    • Protocols for disease classification from mass spectrometry data
    • Wagner M, Naik D, Pothen A. 2003. Protocols for disease classification from mass spectrometry data. Proteomics 3:1692-1698.
    • (2003) Proteomics , vol.3 , pp. 1692-1698
    • Wagner, M.1    Naik, D.2    Pothen, A.3
  • 173
    • 2342580802 scopus 로고    scopus 로고
    • An operator-independent approach to mass spectral peak identification and integration
    • Wallace WE, Kearsley AJ, Guttman CM. 2004. An operator-independent approach to mass spectral peak identification and integration. Anal Chem 76:2446-2452.
    • (2004) Anal Chem , vol.76 , pp. 2446-2452
    • Wallace, W.E.1    Kearsley, A.J.2    Guttman, C.M.3
  • 174
    • 0008740467 scopus 로고
    • Time-warping algorithm applied to chromatographic peak matching gas chromatography/fourier transform infra-redimass spectrometry
    • Wang CP, Isenhour TL. 1987. Time-warping algorithm applied to chromatographic peak matching gas chromatography/fourier transform infra-redimass spectrometry. Anal Chem 59:649-654.
    • (1987) Anal Chem , vol.59 , pp. 649-654
    • Wang, C.P.1    Isenhour, T.L.2
  • 175
    • 0141520592 scopus 로고    scopus 로고
    • Analysis of human serum proteins by liquid phase isoelectric focusing and matrix-assisted laser desorption/ionization-mass spectrometry
    • Wang M, Howard B, Campa M, Patz EJ, Fitzgerald M. 2003. Analysis of human serum proteins by liquid phase isoelectric focusing and matrix-assisted laser desorption/ionization-mass spectrometry. Proteomics 3:1661-1666.
    • (2003) Proteomics , vol.3 , pp. 1661-1666
    • Wang, M.1    Howard, B.2    Campa, M.3    Patz, E.J.4    Fitzgerald, M.5
  • 176
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn MP, Wolters D, Yates JR III. 2001. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol 19:242-247.
    • (2001) Nat Biotechnol , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates III, J.R.3
  • 177
    • 0035383745 scopus 로고    scopus 로고
    • Detection of early-stage cancer by serium protein analysis
    • Watkins B, Szaro R, Ball S. Knubovets T, et al. 2001. Detection of early-stage cancer by serium protein analysis. Am Lab 32:31-36.
    • (2001) Am Lab , vol.32 , pp. 31-36
    • Watkins, B.1    Szaro, R.2    Ball, S.3    Knubovets, T.4
  • 178
    • 0030260340 scopus 로고    scopus 로고
    • A noise and background reduction method for component detection in liquid chromatography/mass spectrometry
    • Windig W. Phalp JM, Payne AW. 1996. A noise and background reduction method for component detection in liquid chromatography/mass spectrometry. Anal Chem 68:3602-3606.
    • (1996) Anal Chem , vol.68 , pp. 3602-3606
    • Windig, W.1    Phalp, J.M.2    Payne, A.W.3
  • 179
    • 0003532227 scopus 로고
    • Stacked generalization
    • Los Alamos, NM
    • Wolpert DH. 1992. Stacked generalization (Technical Report LA-UR-90-3460). Los Alamos, NM.
    • (1992) Technical Report , vol.LA-UR-90-3460
    • Wolpert, D.H.1
  • 180
    • 0347517822 scopus 로고    scopus 로고
    • Pattern analysis of serum proteome distinguishes renal cell carcinoma from other urologie diseases and healthy persons
    • Won Y. Song HJ, Kang TW, Kim JJ, Han BD, Lee SW. 2003. Pattern analysis of serum proteome distinguishes renal cell carcinoma from other urologie diseases and healthy persons. Proteomics 3:2310-2316.
    • (2003) Proteomics , vol.3 , pp. 2310-2316
    • Won, Y.1    Song, H.J.2    Kang, T.W.3    Kim, J.J.4    Han, B.D.5    Lee, S.W.6
  • 181
    • 0036808750 scopus 로고    scopus 로고
    • Precalibration of matrix-assisted laser desorption/ionization-time of flight spectra for peptide mass fingerprinting
    • Wool A, Smilansky Z. 2002. Precalibration of matrix-assisted laser desorption/ionization-time of flight spectra for peptide mass fingerprinting. Proteomics 2:1365-1373.
    • (2002) Proteomics , vol.2 , pp. 1365-1373
    • Wool, A.1    Smilansky, Z.2
  • 183
    • 0038662530 scopus 로고    scopus 로고
    • Proteomic applications for the early detection of cancer
    • Wulfkuhle J, Liotta L, Petricoin EF. 2003. Proteomic applications for the early detection of cancer. Nature Rev 3:267-276.
    • (2003) Nature Rev , vol.3 , pp. 267-276
    • Wulfkuhle, J.1    Liotta, L.2    Petricoin, E.F.3
  • 185
    • 1342294092 scopus 로고    scopus 로고
    • Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation
    • Yang YH, Dudoit S, Luu P, Lin DM, Peng V, Ngai J, Speed TP. 2002. Normalization for cDNA microarray data: A robust composite method addressing single and multiple slide systematic variation. Nucleic Acids Res 30.
    • (2002) Nucleic Acids Res , pp. 30
    • Yang, Y.H.1    Dudoit, S.2    Luu, P.3    Lin, D.M.4    Peng, V.5    Ngai, J.6    Speed, T.P.7
  • 187
    • 0031172203 scopus 로고    scopus 로고
    • Enhancement of the effective resolution of mass spectra of high-mass biomolecules by maximum entropy-based deconvolution to eliminate the isotopic natural abundance distribution
    • Zhang Z, Guan S, Marshall AG. 1997. Enhancement of the effective resolution of mass spectra of high-mass biomolecules by maximum entropy-based deconvolution to eliminate the isotopic natural abundance distribution. J Am Soc Mass Spectrom 8:659-670.
    • (1997) J Am Soc Mass Spectrom , vol.8 , pp. 659-670
    • Zhang, Z.1    Guan, S.2    Marshall, A.G.3
  • 188
    • 0032010153 scopus 로고    scopus 로고
    • A universal algorithm for fast and automated charge state deconvolution
    • Zhang Z, Marshall AG. 1998. A universal algorithm for fast and automated charge state deconvolution of electrospray mass-to-charge ratio spectra. J Am Soc Mass Spectrom 9:225-233.
    • (1998) J Am Soc Mass Spectrom , vol.9 , pp. 225-233
    • Zhang, Z.1    Marshall, A.G.2
  • 189
    • 0032930636 scopus 로고    scopus 로고
    • Optimizing spectroscopic signal-to-noise ratio in analysis of data collected by a chromatographic/spectroscopic system
    • Zhang Z, McElvain JS. 1999. Optimizing spectroscopic signal-to-noise ratio in analysis of data collected by a chromatographic/spectroscopic system. Anal Chem 71:39-45.
    • (1999) Anal Chem , vol.71 , pp. 39-45
    • Zhang, Z.1    McElvain, J.S.2
  • 190
    • 0141676617 scopus 로고    scopus 로고
    • Tree-based disease classification using protein data
    • Zhu H, Yu CY, Zhang H. 2003a. Tree-based disease classification using protein data. Proteomics 3:1673-1677.
    • (2003) Proteomics , vol.3 , pp. 1673-1677
    • Zhu, H.1    Yu, C.Y.2    Zhang, H.3
  • 191
    • 0345166891 scopus 로고    scopus 로고
    • Detection of cancer-specific markers amid massive mass-spectral data
    • Zhu W, Wang X, Ma Y, Rao M, Glimm J, Kovach JS. 2003. Detection of cancer-specific markers amid massive mass-spectral data. Proc Natl Acad Sci USA 100:14666-14671.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 14666-14671
    • Zhu, W.1    Wang, X.2    Ma, Y.3    Rao, M.4    Glimm, J.5    Kovach, J.S.6
  • 192
    • 17744401429 scopus 로고    scopus 로고
    • Centralization: A new method for the normalization of gene expression data
    • Zien A, Aigner T. Zimmer R, Lengauer T. 2001. Centralization: A new method for the normalization of gene expression data. Bioinformatics 17:S323-S331.
    • (2001) Bioinformatics , vol.17
    • Zien, A.1    Aigner, T.2    Zimmer, R.3    Lengauer, T.4


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