Design and implementation of microarray gene expression markup language (MAGE-ML)

Genome Biology

Volumn 3, Issue 9, 2002, Pages

  Spellman, Paul T ^a   Miller, Michael ^b   Stewart, Jason ^c   Troup, Charles ^d   Sarkans, Ugis ^e   Chervitz, Steve ^f   Bernhart, Derek ^f   Sherlock, Gavin ^g   Ball, Catherine ^g   Lepage, Marc ^h   Swiatek, Marcin ⁱ   Marks, Wl ^j   Goncalves, Jason ^j   Markel, Scott ^k   Iordan, Daniel ^j   Shojatalab, Mohammadreza ^e   Pizarro, Angel ^l   White, Joe ^m   Hubley, Robert ⁿ   Deutsch, Eric ⁿ   Senger, Martin ^o   Aronow, Bruce J ^o   Robinson, Alan ^e   Bassett, Doug ^b   Stoeckert, Christian J ^l   Brazma, Alvis ^e   more..

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Rosetta Biosoftware   (United States)

^c Open Informatics   (United States)

^d AGILENT TECHNOLOGIES   (United States)

^e EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^f Thermo Fisher Scientific   (United States)

^g STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^h Molecular Mining Corporation   (Canada)

ⁱ Imaging Research Inc   (Canada)

^j Iobion Informatics LLC   (United States)

^k Lion Biosciences   (United States)

^l UNIVERSITY OF PENNSYLVANIA   (United States)

^m J CRAIG VENTER INSTITUTE   (United States)

ⁿ INSTITUTE FOR SYSTEMS BIOLOGY   (United States)

^o UNIVERSITY OF CINCINNATI COLLEGE OF MEDICINE   (United States)

more..

Author keywords

Application Programmer Interface; Database Schema; Microarray Experiment; Microarray Gene Expression; Unify Modeling Language

Indexed keywords

ARTICLE; CONTROLLED STUDY; DATA BASE; FEMALE; GENE EXPRESSION; HUMAN; MARKUP LANGUAGE; SOFTWARE; BIOLOGICAL MODEL; COMPUTER LANGUAGE; COMPUTER SIMULATION; DNA MICROARRAY; DNA SEQUENCE; GENE EXPRESSION PROFILING; METHODOLOGY;

COMPUTER SIMULATION; GENE EXPRESSION PROFILING; MODELS, BIOLOGICAL; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROGRAMMING LANGUAGES; SEQUENCE ANALYSIS, DNA;

EID: 0037163144     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2002-3-9-research0046     Document Type: Article

References (12)

1. Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball CA, Causton HC, et al: Minimum information about a microarray experiment (MIAME) - toward standards for microarray data. Nat Genet. 2001, 29: 365-371. 10.1038/ng1201-365. DOI: 10.1038/ng1201-365
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6. Open Source Initiative. [http://www.opensource.org]
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8. MicroArray and Gene Expression - MAGE. [http://www.mged.org/Workgroups/MAGE/mage.html]
9. Brazma A, Sarkans U, Robinson A, Vilo J, Vingron M, Hoheisel J, Fellenberg K: Microarray data representation, annotation and storage. In Advances in Biochemical Engineering/Biotechnology. Edited by: Hoheisel J. 2002, Heidelberg: Springer, 77: 113-139.
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