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Volumn 69, Issue , 2014, Pages 311-334

Population Genomics of Plant Species

Author keywords

Adaptation; Deleterious; Effective population size; Evolution; Genome; High throughput sequencing; Mating system; Mutation rate; Natural selection

Indexed keywords


EID: 84890677025     PISSN: 00652296     EISSN: None     Source Type: Book Series    
DOI: 10.1016/B978-0-12-417163-3.00012-3     Document Type: Chapter
Times cited : (1)

References (120)
  • 1
    • 84867099919 scopus 로고    scopus 로고
    • Genome size is not correlated with effective population size in the Oryza species
    • Ai B., Wang Z.S., Ge S. Genome size is not correlated with effective population size in the Oryza species. Evolution 2012, 66(10):3302-3310.
    • (2012) Evolution , vol.66 , Issue.10 , pp. 3302-3310
    • Ai, B.1    Wang, Z.S.2    Ge, S.3
  • 3
    • 69949158093 scopus 로고    scopus 로고
    • What has natural variation taught us about plant development, physiology, and adaptation?
    • Alonso-Blanco C., Aarts M.G., Bentsink L., Keurentjes J.J., Reymond M., Vreugdenhil D., et al. What has natural variation taught us about plant development, physiology, and adaptation?. Plant Cell 2009, 21(7):1877-1896.
    • (2009) Plant Cell , vol.21 , Issue.7 , pp. 1877-1896
    • Alonso-Blanco, C.1    Aarts, M.G.2    Bentsink, L.3    Keurentjes, J.J.4    Reymond, M.5    Vreugdenhil, D.6
  • 5
    • 0034850732 scopus 로고    scopus 로고
    • Species and recombination effects on DNA variability in the tomato genus
    • Baudry E., Kerdelhué C., Innan H., Stephan W. Species and recombination effects on DNA variability in the tomato genus. Genetics 2001, 158(4):1725-1735.
    • (2001) Genetics , vol.158 , Issue.4 , pp. 1725-1735
    • Baudry, E.1    Kerdelhué, C.2    Innan, H.3    Stephan, W.4
  • 6
    • 0000169687 scopus 로고    scopus 로고
    • QTL analyses: Power, precision, and accuracy
    • CRC Press, Boca Raton, A.H. Paterson (Ed.)
    • Beavis W.D. QTL analyses: Power, precision, and accuracy. Molecular analysis of complex traits 1998, 145-161. CRC Press, Boca Raton. A.H. Paterson (Ed.).
    • (1998) Molecular analysis of complex traits , pp. 145-161
    • Beavis, W.D.1
  • 7
    • 0026529344 scopus 로고
    • Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster
    • Begun D.J., Aquadro C.F. Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 1992, 356(6369):519-520.
    • (1992) Nature , vol.356 , Issue.6369 , pp. 519-520
    • Begun, D.J.1    Aquadro, C.F.2
  • 8
    • 0035933527 scopus 로고    scopus 로고
    • Evolutionary dynamics of plant R-genes
    • Bergelson J., Kreitman M., Stahl E.A., Tian D. Evolutionary dynamics of plant R-genes. Science 2001, 292(5525):2281-2285.
    • (2001) Science , vol.292 , Issue.5525 , pp. 2281-2285
    • Bergelson, J.1    Kreitman, M.2    Stahl, E.A.3    Tian, D.4
  • 9
    • 78549289532 scopus 로고    scopus 로고
    • Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana
    • Bergelson J., Roux F. Towards identifying genes underlying ecologically relevant traits in Arabidopsis thaliana. Nature Reviews. Genetics 2010, 11(12):867-879.
    • (2010) Nature Reviews. Genetics , vol.11 , Issue.12 , pp. 867-879
    • Bergelson, J.1    Roux, F.2
  • 11
    • 0036021401 scopus 로고    scopus 로고
    • Genetic analysis of sunflower domestication
    • Burke J.M., Tang S., Knapp S.J., Rieseberg L.H. Genetic analysis of sunflower domestication. Genetics 2002, 161(3):1257-1267.
    • (2002) Genetics , vol.161 , Issue.3 , pp. 1257-1267
    • Burke, J.M.1    Tang, S.2    Knapp, S.J.3    Rieseberg, L.H.4
  • 14
    • 50849109480 scopus 로고    scopus 로고
    • Repeated adaptive introgression at a gene under multiallelic balancing selection
    • Castric V., Bechsgaard J., Schierup M.H., Vekemans X. Repeated adaptive introgression at a gene under multiallelic balancing selection. PLoS Genetics 2008, 4(8):e1000168.
    • (2008) PLoS Genetics , vol.4 , Issue.8
    • Castric, V.1    Bechsgaard, J.2    Schierup, M.H.3    Vekemans, X.4
  • 15
    • 35648958288 scopus 로고    scopus 로고
    • Evolution under strong balancing selection: How many codons determine specificity at the female self-incompatibility gene SRK in Brassicaceae?
    • Castric V., Vekemans X. Evolution under strong balancing selection: How many codons determine specificity at the female self-incompatibility gene SRK in Brassicaceae?. BMC Evolutionary Biology 2007, 7:132.
    • (2007) BMC Evolutionary Biology , vol.7 , pp. 132
    • Castric, V.1    Vekemans, X.2
  • 16
    • 33646484211 scopus 로고    scopus 로고
    • Balancing selection and its effects on sequences in nearby genome regions
    • Charlesworth D. Balancing selection and its effects on sequences in nearby genome regions. PLoS Genetics 2006, 2(4):e64.
    • (2006) PLoS Genetics , vol.2 , Issue.4
    • Charlesworth, D.1
  • 17
    • 60349093708 scopus 로고    scopus 로고
    • Fundamental concepts in genetics: Effective population size and patterns of molecular evolution and variation
    • Charlesworth B. Fundamental concepts in genetics: Effective population size and patterns of molecular evolution and variation. Nature Reviews. Genetics 2009, 10(3):195-205.
    • (2009) Nature Reviews. Genetics , vol.10 , Issue.3 , pp. 195-205
    • Charlesworth, B.1
  • 18
    • 1842587751 scopus 로고    scopus 로고
    • Genome size: Does bigger mean worse?
    • Charlesworth B., Barton N. Genome size: Does bigger mean worse?. Current Biology 2004, 14(6):R233-R235.
    • (2004) Current Biology , vol.14 , Issue.6
    • Charlesworth, B.1    Barton, N.2
  • 20
    • 84871268599 scopus 로고    scopus 로고
    • Male-specific DNA markers provide genetic evidence of an XY chromosome system, a recombination arrest and allow the tracing of paternal lineages in date palm
    • Cherif E., Zehdi S., Castillo K., Chabrillange N., Abdoulkader S., Pintaud J.C., et al. Male-specific DNA markers provide genetic evidence of an XY chromosome system, a recombination arrest and allow the tracing of paternal lineages in date palm. New Phytologist 2013, 197(2):409-415.
    • (2013) New Phytologist , vol.197 , Issue.2 , pp. 409-415
    • Cherif, E.1    Zehdi, S.2    Castillo, K.3    Chabrillange, N.4    Abdoulkader, S.5    Pintaud, J.C.6
  • 23
    • 34547108086 scopus 로고    scopus 로고
    • Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana
    • Clark R.M., Schweikert G., Toomajian C., Ossowski S., Zeller G., Shinn P., et al. Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana. Science 2007, 317(5836):338-342.
    • (2007) Science , vol.317 , Issue.5836 , pp. 338-342
    • Clark, R.M.1    Schweikert, G.2    Toomajian, C.3    Ossowski, S.4    Zeller, G.5    Shinn, P.6
  • 24
    • 84875230189 scopus 로고    scopus 로고
    • Genomic signatures of selection at linked sites: Unifying the disparity among species
    • Cutter A.D., Payseur B.A. Genomic signatures of selection at linked sites: Unifying the disparity among species. Nature Reviews. Genetics 2013, 14(4):262-274.
    • (2013) Nature Reviews. Genetics , vol.14 , Issue.4 , pp. 262-274
    • Cutter, A.D.1    Payseur, B.A.2
  • 27
    • 33748473348 scopus 로고    scopus 로고
    • The genomic rate of adaptive evolution
    • Eyre-Walker A. The genomic rate of adaptive evolution. Trends in Ecology & Evolution 2006, 21(10):569-575.
    • (2006) Trends in Ecology & Evolution , vol.21 , Issue.10 , pp. 569-575
    • Eyre-Walker, A.1
  • 28
    • 0037186608 scopus 로고    scopus 로고
    • Testing the neutral theory of molecular evolution with genomic data from Drosophila
    • Fay J.C., Wyckoff G.J., Wu C.I. Testing the neutral theory of molecular evolution with genomic data from Drosophila. Nature 2002, 415(6875):1024-1026.
    • (2002) Nature , vol.415 , Issue.6875 , pp. 1024-1026
    • Fay, J.C.1    Wyckoff, G.J.2    Wu, C.I.3
  • 29
    • 1842833989 scopus 로고    scopus 로고
    • Minor quantitative trait loci underlie floral traits associated with mating system divergence in Mimulus
    • Fishman L., Kelly A.J., Willis J.H. Minor quantitative trait loci underlie floral traits associated with mating system divergence in Mimulus. Evolution 2002, 56(11):2138-2155.
    • (2002) Evolution , vol.56 , Issue.11 , pp. 2138-2155
    • Fishman, L.1    Kelly, A.J.2    Willis, J.H.3
  • 31
    • 58549089667 scopus 로고    scopus 로고
    • The evolution of plant genomes: Scaling up from a population perspective
    • Flowers J.M., Purugganan M.D. The evolution of plant genomes: Scaling up from a population perspective. Current Opinion in Genetics and Development 2008, 18(6):565-570.
    • (2008) Current Opinion in Genetics and Development , vol.18 , Issue.6 , pp. 565-570
    • Flowers, J.M.1    Purugganan, M.D.2
  • 35
    • 0029812835 scopus 로고    scopus 로고
    • Substitution rate comparisons between grasses and palms: Synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL
    • Gaut B.S., Morton B.R., McCaig B.C., Clegg M.T. Substitution rate comparisons between grasses and palms: Synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL. Proceedings of the National Academy of Sciences of the United States of America 1996, 93(19):10274-10279.
    • (1996) Proceedings of the National Academy of Sciences of the United States of America , vol.93 , Issue.19 , pp. 10274-10279
    • Gaut, B.S.1    Morton, B.R.2    McCaig, B.C.3    Clegg, M.T.4
  • 37
    • 35549007506 scopus 로고    scopus 로고
    • Mating systems and the efficacy of selection at the molecular level
    • Glémin S. Mating systems and the efficacy of selection at the molecular level. Genetics 2007, 177(2):905-916.
    • (2007) Genetics , vol.177 , Issue.2 , pp. 905-916
    • Glémin, S.1
  • 38
    • 34247214027 scopus 로고    scopus 로고
    • Impact of mating systems on patterns of sequence polymorphism in flowering plants
    • Glémin S., Bazin E., Charlesworth D. Impact of mating systems on patterns of sequence polymorphism in flowering plants. Proceedings of the Biological Sciences 2006, 273(1604):3011-3019.
    • (2006) Proceedings of the Biological Sciences , vol.273 , Issue.1604 , pp. 3011-3019
    • Glémin, S.1    Bazin, E.2    Charlesworth, D.3
  • 39
    • 33646920687 scopus 로고    scopus 로고
    • The genetic basis of floral traits associated with mating system evolution in Leptosiphon (Polemoniaceae): An analysis of quantitative trait loci
    • Goodwillie C., Ritland C., Ritland K. The genetic basis of floral traits associated with mating system evolution in Leptosiphon (Polemoniaceae): An analysis of quantitative trait loci. Evolution 2006, 60(3):491-504.
    • (2006) Evolution , vol.60 , Issue.3 , pp. 491-504
    • Goodwillie, C.1    Ritland, C.2    Ritland, K.3
  • 40
    • 84865294828 scopus 로고    scopus 로고
    • Signatures of balancing selection are maintained at disease resistance loci following mating system evolution and a population bottleneck in the genus Capsella
    • Gos G., Slotte T., Wright S.I. Signatures of balancing selection are maintained at disease resistance loci following mating system evolution and a population bottleneck in the genus Capsella. BMC Evolutionary Biology 2012, 12:152.
    • (2012) BMC Evolutionary Biology , vol.12 , pp. 152
    • Gos, G.1    Slotte, T.2    Wright, S.I.3
  • 41
    • 84865426303 scopus 로고    scopus 로고
    • The effect of variation in the effective population size on the rate of adaptive molecular evolution in eukaryotes
    • Gossmann T.I., Keightley P.D., Eyre-Walker A. The effect of variation in the effective population size on the rate of adaptive molecular evolution in eukaryotes. Genome Biology and Evolution 2012, 4(5):658-667.
    • (2012) Genome Biology and Evolution , vol.4 , Issue.5 , pp. 658-667
    • Gossmann, T.I.1    Keightley, P.D.2    Eyre-Walker, A.3
  • 43
    • 62749120110 scopus 로고    scopus 로고
    • Genetic architecture for the adaptive origin of annual wild rice, Oryza nivara
    • Grillo M.A., Li C., Fowlkes A.M., Briggeman T.M., Zhou A., Schemske D.W., et al. Genetic architecture for the adaptive origin of annual wild rice, Oryza nivara. Evolution 2009, 63(4):870-883.
    • (2009) Evolution , vol.63 , Issue.4 , pp. 870-883
    • Grillo, M.A.1    Li, C.2    Fowlkes, A.M.3    Briggeman, T.M.4    Zhou, A.5    Schemske, D.W.6
  • 44
    • 4344631970 scopus 로고    scopus 로고
    • Evolution of genome size in pines (Pinus) and its life-history correlates: Supertree analyses
    • Grotkopp E., Rejmánek M., Sanderson M.J., Rost T.L. Evolution of genome size in pines (Pinus) and its life-history correlates: Supertree analyses. Evolution 2004, 58(8):1705-1729.
    • (2004) Evolution , vol.58 , Issue.8 , pp. 1705-1729
    • Grotkopp, E.1    Rejmánek, M.2    Sanderson, M.J.3    Rost, T.L.4
  • 46
    • 84871941712 scopus 로고    scopus 로고
    • The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions
    • Guo S., Zhang J., Sun H., Salse J., Lucas W.J., Zhang H., et al. The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions. Nature Genetics 2013, 45(1):51-58.
    • (2013) Nature Genetics , vol.45 , Issue.1 , pp. 51-58
    • Guo, S.1    Zhang, J.2    Sun, H.3    Salse, J.4    Lucas, W.J.5    Zhang, H.6
  • 49
    • 84876843380 scopus 로고    scopus 로고
    • Comparative population genomics in Collinsia sister species reveals evidence for reduced effective population size, relaxed selection, and evolution of biased gene conversion with an ongoing mating system shift
    • Hazzouri K.M., Escobar J.S., Ness R.W., Killian Newman L., Randle A.M., Kalisz S., et al. Comparative population genomics in Collinsia sister species reveals evidence for reduced effective population size, relaxed selection, and evolution of biased gene conversion with an ongoing mating system shift. Evolution 2013, 67(5):1263-1278.
    • (2013) Evolution , vol.67 , Issue.5 , pp. 1263-1278
    • Hazzouri, K.M.1    Escobar, J.S.2    Ness, R.W.3    Killian Newman, L.4    Randle, A.M.5    Kalisz, S.6
  • 51
    • 84867875610 scopus 로고    scopus 로고
    • A map of rice genome variation reveals the origin of cultivated rice
    • Huang X., Kurata N., Wei X., Wang Z.X., Wang A., Zhao Q., et al. A map of rice genome variation reveals the origin of cultivated rice. Nature 2012, 490(7421):497-501.
    • (2012) Nature , vol.490 , Issue.7421 , pp. 497-501
    • Huang, X.1    Kurata, N.2    Wei, X.3    Wang, Z.X.4    Wang, A.5    Zhao, Q.6
  • 53
    • 84862981255 scopus 로고    scopus 로고
    • Genome-wide genetic changes during modern breeding of maize
    • Jiao Y., Zhao H., Ren L., Song W., Zeng B., Guo J., et al. Genome-wide genetic changes during modern breeding of maize. Nature Genetics 2012, 44(7):812-815.
    • (2012) Nature Genetics , vol.44 , Issue.7 , pp. 812-815
    • Jiao, Y.1    Zhao, H.2    Ren, L.3    Song, W.4    Zeng, B.5    Guo, J.6
  • 54
    • 0021733694 scopus 로고
    • Deleterious mutations as an evolutionary factor. 1. The advantage of recombination
    • Kondrashov A.S. Deleterious mutations as an evolutionary factor. 1. The advantage of recombination. Genetics Research 1984, 44(2):199-217.
    • (1984) Genetics Research , vol.44 , Issue.2 , pp. 199-217
    • Kondrashov, A.S.1
  • 55
    • 68249120152 scopus 로고    scopus 로고
    • A multiparent advanced generation inter-cross to fine-map quantitative traits in Arabidopsis thaliana
    • Kover P.X., Valdar W., Trakalo J., Scarcelli N., Ehrenreich I.M., Purugganan M.D., et al. A multiparent advanced generation inter-cross to fine-map quantitative traits in Arabidopsis thaliana. PLoS Genetics 2009, 5(7):e1000551.
    • (2009) PLoS Genetics , vol.5 , Issue.7
    • Kover, P.X.1    Valdar, W.2    Trakalo, J.3    Scarcelli, N.4    Ehrenreich, I.M.5    Purugganan, M.D.6
  • 56
    • 84869003100 scopus 로고    scopus 로고
    • Environmental adaptation contributes to gene polymorphism across the Arabidopsis thaliana genome
    • Lee C.R., Mitchell-Olds T. Environmental adaptation contributes to gene polymorphism across the Arabidopsis thaliana genome. Molecular Biology and Evolution 2012, 29(12):3721-3728.
    • (2012) Molecular Biology and Evolution , vol.29 , Issue.12 , pp. 3721-3728
    • Lee, C.R.1    Mitchell-Olds, T.2
  • 58
    • 0030837765 scopus 로고    scopus 로고
    • Quantitative trait loci differentiating the outbreeding Mimulus guttatus from the inbreeding M. platycalyx
    • Lin J.Z., Ritland K. Quantitative trait loci differentiating the outbreeding Mimulus guttatus from the inbreeding M. platycalyx. Genetics 1997, 146(3):1115-1121.
    • (1997) Genetics , vol.146 , Issue.3 , pp. 1115-1121
    • Lin, J.Z.1    Ritland, K.2
  • 59
    • 0032922271 scopus 로고    scopus 로고
    • The effect of mating system differences on nucleotide diversity at the phosphoglucose isomerase locus in the plant genus Leavenworthia
    • Liu F., Charlesworth D., Kreitman M. The effect of mating system differences on nucleotide diversity at the phosphoglucose isomerase locus in the plant genus Leavenworthia. Genetics 1999, 151(1):343-357.
    • (1999) Genetics , vol.151 , Issue.1 , pp. 343-357
    • Liu, F.1    Charlesworth, D.2    Kreitman, M.3
  • 60
    • 13344278024 scopus 로고    scopus 로고
    • Genome-wide high-resolution mapping by recurrent intermating using Arabidopsis thaliana as a model
    • Liu S.C., Kowalski S.P., Lan T.H., Feldmann K.A., Paterson A.H. Genome-wide high-resolution mapping by recurrent intermating using Arabidopsis thaliana as a model. Genetics 1996, 142(1):247-258.
    • (1996) Genetics , vol.142 , Issue.1 , pp. 247-258
    • Liu, S.C.1    Kowalski, S.P.2    Lan, T.H.3    Feldmann, K.A.4    Paterson, A.H.5
  • 62
    • 0032557009 scopus 로고    scopus 로고
    • Genetic diversity in Leavenworthia populations with different inbreeding levels
    • Liu F., Zhang L., Charlesworth D. Genetic diversity in Leavenworthia populations with different inbreeding levels. Proceedings of the Biological Sciences 1998, 265(1393):293-301.
    • (1998) Proceedings of the Biological Sciences , vol.265 , Issue.1393 , pp. 293-301
    • Liu, F.1    Zhang, L.2    Charlesworth, D.3
  • 64
    • 33344458581 scopus 로고    scopus 로고
    • The accumulation of deleterious mutations in rice genomes: A hypothesis on the cost of domestication
    • Lu J., Tang T., Tang H., Huang J., Shi S., Wu C.I. The accumulation of deleterious mutations in rice genomes: A hypothesis on the cost of domestication. Trends in Genetics 2006, 22(3):126-131.
    • (2006) Trends in Genetics , vol.22 , Issue.3 , pp. 126-131
    • Lu, J.1    Tang, T.2    Tang, H.3    Huang, J.4    Shi, S.5    Wu, C.I.6
  • 65
    • 0345306751 scopus 로고    scopus 로고
    • The origins of genome complexity
    • Lynch M., Conery J.S. The origins of genome complexity. Science 2003, 302(5649):1401-1404.
    • (2003) Science , vol.302 , Issue.5649 , pp. 1401-1404
    • Lynch, M.1    Conery, J.S.2
  • 67
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • Maynard Smith J., Haigh J. The hitch-hiking effect of a favourable gene. Genetical Research 1974, 23(1):23-35.
    • (1974) Genetical Research , vol.23 , Issue.1 , pp. 23-35
    • Maynard Smith, J.1    Haigh, J.2
  • 68
    • 77956001598 scopus 로고    scopus 로고
    • Ecological genetics of the Bromus tectorum (Poaceae)-Ustilago bullata (Ustilaginaceae) pathosystem: A role for frequency-dependent selection?
    • Meyer S.E., Nelson D.L., Clement S., Ramakrishnan A. Ecological genetics of the Bromus tectorum (Poaceae)-Ustilago bullata (Ustilaginaceae) pathosystem: A role for frequency-dependent selection?. American Journal of Botany 2010, 97(8):1304-1312.
    • (2010) American Journal of Botany , vol.97 , Issue.8 , pp. 1304-1312
    • Meyer, S.E.1    Nelson, D.L.2    Clement, S.3    Ramakrishnan, A.4
  • 69
    • 33745562481 scopus 로고    scopus 로고
    • Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis
    • Mitchell-Olds T., Schmitt J. Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis. Nature 2006, 441(7096):947-952.
    • (2006) Nature , vol.441 , Issue.7096 , pp. 947-952
    • Mitchell-Olds, T.1    Schmitt, J.2
  • 71
    • 0033955649 scopus 로고    scopus 로고
    • Examining rates and patterns of nucleotide substitution in plants
    • Muse S.V. Examining rates and patterns of nucleotide substitution in plants. Plant Molecular Biology 2000, 42(1):25-43.
    • (2000) Plant Molecular Biology , vol.42 , Issue.1 , pp. 25-43
    • Muse, S.V.1
  • 72
    • 0030984551 scopus 로고    scopus 로고
    • Comparing patterns of nucleotide substitution rates among chloroplast loci using the relative ratio test
    • Muse S.V., Gaut B.S. Comparing patterns of nucleotide substitution rates among chloroplast loci using the relative ratio test. Genetics 1997, 146(1):393-399.
    • (1997) Genetics , vol.146 , Issue.1 , pp. 393-399
    • Muse, S.V.1    Gaut, B.S.2
  • 73
    • 84870709677 scopus 로고    scopus 로고
    • Estimate of the spontaneous mutation rate in Chlamydomonas reinhardtii
    • Ness R.W., Morgan A.D., Colegrave N., Keightley P.D. Estimate of the spontaneous mutation rate in Chlamydomonas reinhardtii. Genetics 2012, 192(4):1447-1454.
    • (2012) Genetics , vol.192 , Issue.4 , pp. 1447-1454
    • Ness, R.W.1    Morgan, A.D.2    Colegrave, N.3    Keightley, P.D.4
  • 74
    • 77749271392 scopus 로고    scopus 로고
    • Mating-system variation, demographic history and patterns of nucleotide diversity in the Tristylous plant Eichhornia paniculata
    • Ness R.W., Wright S.I., Barrett S.C. Mating-system variation, demographic history and patterns of nucleotide diversity in the Tristylous plant Eichhornia paniculata. Genetics 2010, 184(2):381-392.
    • (2010) Genetics , vol.184 , Issue.2 , pp. 381-392
    • Ness, R.W.1    Wright, S.I.2    Barrett, S.C.3
  • 75
    • 0033962299 scopus 로고    scopus 로고
    • Linkage disequilibrium, gene trees and selfing: An ancestral recombination graph with partial self-fertilization
    • Nordborg M. Linkage disequilibrium, gene trees and selfing: An ancestral recombination graph with partial self-fertilization. Genetics 2000, 154(2):923-929.
    • (2000) Genetics , vol.154 , Issue.2 , pp. 923-929
    • Nordborg, M.1
  • 77
    • 33745418945 scopus 로고    scopus 로고
    • Selection under domestication: Evidence for a sweep in the rice waxy genomic region
    • Olsen K.M., Caicedo A.L., Polato N., McClung A., McCouch S., Purugganan M.D. Selection under domestication: Evidence for a sweep in the rice waxy genomic region. Genetics 2006, 173(2):975-983.
    • (2006) Genetics , vol.173 , Issue.2 , pp. 975-983
    • Olsen, K.M.1    Caicedo, A.L.2    Polato, N.3    McClung, A.4    McCouch, S.5    Purugganan, M.D.6
  • 78
    • 84877677216 scopus 로고    scopus 로고
    • A bountiful harvest: Genomic insights into crop domestication phenotypes
    • Olsen K.M., Wendel J.F. A bountiful harvest: Genomic insights into crop domestication phenotypes. Annual Review of Plant Biology 2013, 64:47-70.
    • (2013) Annual Review of Plant Biology , vol.64 , pp. 47-70
    • Olsen, K.M.1    Wendel, J.F.2
  • 79
    • 84869453241 scopus 로고    scopus 로고
    • Adaptive evolution: Evaluating empirical support for theoretical predictions
    • Olson-Manning C.F., Wagner M.R., Mitchell-Olds T. Adaptive evolution: Evaluating empirical support for theoretical predictions. Nature Reviews. Genetics 2012, 13(12):867-887.
    • (2012) Nature Reviews. Genetics , vol.13 , Issue.12 , pp. 867-887
    • Olson-Manning, C.F.1    Wagner, M.R.2    Mitchell-Olds, T.3
  • 80
  • 81
    • 4644316529 scopus 로고    scopus 로고
    • Molecular evolution of the GapC gene family in Amsinckia spectabilis populations that differ in outcrossing rate
    • Pérusse J.R., Schoen D.J. Molecular evolution of the GapC gene family in Amsinckia spectabilis populations that differ in outcrossing rate. Journal of Molecular Evolution 2004, 59(4):427-436.
    • (2004) Journal of Molecular Evolution , vol.59 , Issue.4 , pp. 427-436
    • Pérusse, J.R.1    Schoen, D.J.2
  • 82
    • 0002854090 scopus 로고    scopus 로고
    • Beyond the average; the evolutionary importance of gene interactions and variability of epistatic effects
    • Oxford University Press, New York, NY, J.B. Wolf, E.D. Brodie, M.J. Wade (Eds.)
    • Phillips P.C., Otto S.P., Whitlock M.C. Beyond the average; the evolutionary importance of gene interactions and variability of epistatic effects. Epistasis and the evolutionary process 2000, Oxford University Press, New York, NY. J.B. Wolf, E.D. Brodie, M.J. Wade (Eds.).
    • (2000) Epistasis and the evolutionary process
    • Phillips, P.C.1    Otto, S.P.2    Whitlock, M.C.3
  • 83
    • 0023427397 scopus 로고
    • On the theory of partially inbreeding finite populations. I. Partial selfing
    • Pollak E. On the theory of partially inbreeding finite populations. I. Partial selfing. Genetics 1987, 117(2):353-360.
    • (1987) Genetics , vol.117 , Issue.2 , pp. 353-360
    • Pollak, E.1
  • 84
    • 76749097550 scopus 로고    scopus 로고
    • The genetics of human adaptation: Hard sweeps, soft sweeps, and polygenic adaptation
    • Pritchard J.K., Pickrell J.K., Coop G. The genetics of human adaptation: Hard sweeps, soft sweeps, and polygenic adaptation. Current Biology 2010, 20(4):R208-R215.
    • (2010) Current Biology , vol.20 , Issue.4
    • Pritchard, J.K.1    Pickrell, J.K.2    Coop, G.3
  • 85
    • 84855751842 scopus 로고    scopus 로고
    • Reduced efficacy of natural selection on codon usage bias in selfing Arabidopsis and Capsella species
    • Qiu S., Zeng K., Slotte T., Wright S., Charlesworth D. Reduced efficacy of natural selection on codon usage bias in selfing Arabidopsis and Capsella species. Genome Biology and Evolution 2011, 3:868-880.
    • (2011) Genome Biology and Evolution , vol.3 , pp. 868-880
    • Qiu, S.1    Zeng, K.2    Slotte, T.3    Wright, S.4    Charlesworth, D.5
  • 86
    • 34249089816 scopus 로고    scopus 로고
    • Natural variation in the Pto disease resistance gene within species of wild tomato (Lycopersicon). II. Population genetics of Pto
    • Rose L.E., Michelmore R.W., Langley C.H. Natural variation in the Pto disease resistance gene within species of wild tomato (Lycopersicon). II. Population genetics of Pto. Genetics 2007, 175(3):1307-1319.
    • (2007) Genetics , vol.175 , Issue.3 , pp. 1307-1319
    • Rose, L.E.1    Michelmore, R.W.2    Langley, C.H.3
  • 87
    • 67349138639 scopus 로고    scopus 로고
    • Family-based mapping of quantitative trait loci in plant breeding populations with resistance to Fusarium head blight in wheat as an illustration
    • Rosyara U.R., Gonzalez-Hernandez J.L., Glover K.D., Gedye K.R., Stein J.M. Family-based mapping of quantitative trait loci in plant breeding populations with resistance to Fusarium head blight in wheat as an illustration. Theoretical and Applied Genetics 2009, 118(8):1617-1631.
    • (2009) Theoretical and Applied Genetics , vol.118 , Issue.8 , pp. 1617-1631
    • Rosyara, U.R.1    Gonzalez-Hernandez, J.L.2    Glover, K.D.3    Gedye, K.R.4    Stein, J.M.5
  • 89
    • 0034085378 scopus 로고    scopus 로고
    • Contrasting patterns of nucleotide polymorphism at the alcohol dehydrogenase locus in the outcrossing Arabidopsis lyrata and the selfing Arabidopsis thaliana
    • Savolainen O., Langley C.H., Lazzaro B.P., Fr H. Contrasting patterns of nucleotide polymorphism at the alcohol dehydrogenase locus in the outcrossing Arabidopsis lyrata and the selfing Arabidopsis thaliana. Molecular Biology and Evolution 2000, 17(4):645-655.
    • (2000) Molecular Biology and Evolution , vol.17 , Issue.4 , pp. 645-655
    • Savolainen, O.1    Langley, C.H.2    Lazzaro, B.P.3    Fr, H.4
  • 90
    • 0035024080 scopus 로고    scopus 로고
    • Identification and characterization of a polymorphic receptor kinase gene linked to the self-incompatibility locus of Arabidopsis lyrata
    • Schierup M.H., Mable B.K., Awadalla P., Charlesworth D. Identification and characterization of a polymorphic receptor kinase gene linked to the self-incompatibility locus of Arabidopsis lyrata. Genetics 2001, 158(1):387-399.
    • (2001) Genetics , vol.158 , Issue.1 , pp. 387-399
    • Schierup, M.H.1    Mable, B.K.2    Awadalla, P.3    Charlesworth, D.4
  • 93
    • 0030830534 scopus 로고    scopus 로고
    • Mutation and extinction: The role of variable mutational effects, synergistic epistasis, beneficial mutations, and degree of outcrossing
    • Schultz S.T., Lynch M. Mutation and extinction: The role of variable mutational effects, synergistic epistasis, beneficial mutations, and degree of outcrossing. Evolution 1997, 51:1363-1371.
    • (1997) Evolution , vol.51 , pp. 1363-1371
    • Schultz, S.T.1    Lynch, M.2
  • 95
    • 77954966377 scopus 로고    scopus 로고
    • Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size
    • Slotte T., Foxe J.P., Hazzouri K.M., Wright S.I. Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size. Molecular Biology and Evolution 2010, 27(8):1813-1821.
    • (2010) Molecular Biology and Evolution , vol.27 , Issue.8 , pp. 1813-1821
    • Slotte, T.1    Foxe, J.P.2    Hazzouri, K.M.3    Wright, S.I.4
  • 96
    • 84879686532 scopus 로고    scopus 로고
    • The Capsella rubella genome and the genomic consequences of rapid mating system evolution
    • Slotte T., Hazzouri K.M., Agren J.A., Koenig D., Maumus F., Guo Y.L., et al. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics 2013, 45(7):831-835.
    • (2013) Nature Genetics , vol.45 , Issue.7 , pp. 831-835
    • Slotte, T.1    Hazzouri, K.M.2    Agren, J.A.3    Koenig, D.4    Maumus, F.5    Guo, Y.L.6
  • 97
    • 84860127658 scopus 로고    scopus 로고
    • Genetic architecture and adaptive significance of the selfing syndrome in Capsella
    • Slotte T., Hazzouri K.M., Stern D., Andolfatto P., Wright S.I. Genetic architecture and adaptive significance of the selfing syndrome in Capsella. Evolution 2012, 66(5):1360-1374.
    • (2012) Evolution , vol.66 , Issue.5 , pp. 1360-1374
    • Slotte, T.1    Hazzouri, K.M.2    Stern, D.3    Andolfatto, P.4    Wright, S.I.5
  • 98
    • 0037186564 scopus 로고    scopus 로고
    • Adaptive protein evolution in Drosophila
    • Smith N.G., Eyre-Walker A. Adaptive protein evolution in Drosophila. Nature 2002, 415(6875):1022-1024.
    • (2002) Nature , vol.415 , Issue.6875 , pp. 1022-1024
    • Smith, N.G.1    Eyre-Walker, A.2
  • 99
    • 0033549777 scopus 로고    scopus 로고
    • Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis
    • Stahl E.A., Dwyer G., Mauricio R., Kreitman M., Bergelson J. Dynamics of disease resistance polymorphism at the Rpm1 locus of Arabidopsis. Nature 1999, 400(6745):667-671.
    • (1999) Nature , vol.400 , Issue.6745 , pp. 667-671
    • Stahl, E.A.1    Dwyer, G.2    Mauricio, R.3    Kreitman, M.4    Bergelson, J.5
  • 103
    • 0344232716 scopus 로고    scopus 로고
    • Patterns of nucleotide diversity in two species of Mimulus are affected by mating system and asymmetric introgression
    • Sweigart A.L., Willis J.H. Patterns of nucleotide diversity in two species of Mimulus are affected by mating system and asymmetric introgression. Evolution 2003, 57(11):2490-2506.
    • (2003) Evolution , vol.57 , Issue.11 , pp. 2490-2506
    • Sweigart, A.L.1    Willis, J.H.2
  • 104
    • 84878553926 scopus 로고    scopus 로고
    • The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
    • The International Peach Genome Initiative
    • The International Peach Genome Initiative The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nature Genetics 2013, 45:487-494.
    • (2013) Nature Genetics , vol.45 , pp. 487-494
  • 105
    • 79251561130 scopus 로고    scopus 로고
    • Genome-wide association study of leaf architecture in the maize nested association mapping population
    • Tian F., Bradbury P.J., Brown P.J., Hung H., Sun Q., Flint-Garcia S., et al. Genome-wide association study of leaf architecture in the maize nested association mapping population. Nature Genetics 2011, 43(2):159-162.
    • (2011) Nature Genetics , vol.43 , Issue.2 , pp. 159-162
    • Tian, F.1    Bradbury, P.J.2    Brown, P.J.3    Hung, H.4    Sun, Q.5    Flint-Garcia, S.6
  • 106
    • 0037653656 scopus 로고    scopus 로고
    • Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana
    • Tian D., Traw M.B., Chen J.Q., Kreitman M., Bergelson J. Fitness costs of R-gene-mediated resistance in Arabidopsis thaliana. Nature 2003, 423(6935):74-77.
    • (2003) Nature , vol.423 , Issue.6935 , pp. 74-77
    • Tian, D.1    Traw, M.B.2    Chen, J.Q.3    Kreitman, M.4    Bergelson, J.5
  • 107
    • 84875176954 scopus 로고    scopus 로고
    • Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
    • Varshney R.K., Song C., Saxena R.K., Azam S., Yu S., Sharpe A.G., et al. Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement. Nature Biotechnology 2013, 31(3):240-246.
    • (2013) Nature Biotechnology , vol.31 , Issue.3 , pp. 240-246
    • Varshney, R.K.1    Song, C.2    Saxena, R.K.3    Azam, S.4    Yu, S.5    Sharpe, A.G.6
  • 108
    • 0242380288 scopus 로고    scopus 로고
    • Selfish DNA is maladaptive: Evidence from the plant Red List
    • Vinogradov A.E. Selfish DNA is maladaptive: Evidence from the plant Red List. Trends in Genetics 2003, 19(11):609-614.
    • (2003) Trends in Genetics , vol.19 , Issue.11 , pp. 609-614
    • Vinogradov, A.E.1
  • 109
    • 55049095469 scopus 로고    scopus 로고
    • Control of rice grain-filling and yield by a gene with a potential signature of domestication
    • Wang E., Wang J., Zhu X., Hao W., Wang L., Li Q., et al. Control of rice grain-filling and yield by a gene with a potential signature of domestication. Nature Genetics 2008, 40(11):1370-1374.
    • (2008) Nature Genetics , vol.40 , Issue.11 , pp. 1370-1374
    • Wang, E.1    Wang, J.2    Zhu, X.3    Hao, W.4    Wang, L.5    Li, Q.6
  • 111
    • 0001389016 scopus 로고
    • The distribution of self-sterility alleles in populations
    • Wright S. The distribution of self-sterility alleles in populations. Genetics 1939, 24(4):538-552.
    • (1939) Genetics , vol.24 , Issue.4 , pp. 538-552
    • Wright, S.1
  • 112
    • 58549090139 scopus 로고    scopus 로고
    • The impact of natural selection on the genome: Emerging patterns in Drosophila and Arabidopsis
    • Wright S.I., Andolfatto P. The impact of natural selection on the genome: Emerging patterns in Drosophila and Arabidopsis. Annual Review of Ecology, Evolution, and Systematics 2008, 39:193-213.
    • (2008) Annual Review of Ecology, Evolution, and Systematics , vol.39 , pp. 193-213
    • Wright, S.I.1    Andolfatto, P.2
  • 113
    • 0036729901 scopus 로고    scopus 로고
    • Rates and patterns of molecular evolution in inbred and outbred Arabidopsis
    • Wright S.I., Lauga B., Charlesworth D. Rates and patterns of molecular evolution in inbred and outbred Arabidopsis. Molecular Biology and Evolution 2002, 19(9):1407-1420.
    • (2002) Molecular Biology and Evolution , vol.19 , Issue.9 , pp. 1407-1420
    • Wright, S.I.1    Lauga, B.2    Charlesworth, D.3
  • 115
    • 0032959643 scopus 로고    scopus 로고
    • Identification of genetic factors controlling domestication-related traits of rice using an F2 population of a cross between Oryza sativa and O. rufipogon
    • Xiong L.Z., Liu K.D., Dai X.K., Xu C.G., Zhang Q. Identification of genetic factors controlling domestication-related traits of rice using an F2 population of a cross between Oryza sativa and O. rufipogon. Theoretical and Applied Genetics 1999, 98:243-251.
    • (1999) Theoretical and Applied Genetics , vol.98 , pp. 243-251
    • Xiong, L.Z.1    Liu, K.D.2    Dai, X.K.3    Xu, C.G.4    Zhang, Q.5
  • 116
    • 84862936211 scopus 로고    scopus 로고
    • Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
    • Xu X., Liu X., Ge S., Jensen J.D., Hu F., Li X., et al. Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nature Biotechnology 2011, 30(1):105-111.
    • (2011) Nature Biotechnology , vol.30 , Issue.1 , pp. 105-111
    • Xu, X.1    Liu, X.2    Ge, S.3    Jensen, J.D.4    Hu, F.5    Li, X.6
  • 118
    • 33744980661 scopus 로고    scopus 로고
    • Genetic association mapping and genome organization of maize
    • Yu J., Buckler E.S. Genetic association mapping and genome organization of maize. Current Opinion in Biotechnology 2006, 17(2):155-160.
    • (2006) Current Opinion in Biotechnology , vol.17 , Issue.2 , pp. 155-160
    • Yu, J.1    Buckler, E.S.2
  • 119
    • 40849089396 scopus 로고    scopus 로고
    • Genetic design and statistical power of nested association mapping in maize
    • Yu J., Holland J.B., McMullen M.D., Buckler E.S. Genetic design and statistical power of nested association mapping in maize. Genetics 2008, 178(1):539-551.
    • (2008) Genetics , vol.178 , Issue.1 , pp. 539-551
    • Yu, J.1    Holland, J.B.2    McMullen, M.D.3    Buckler, E.S.4


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