Mating systems and the efficacy of selection at the molecular level

Genetics

Volumn 177, Issue 2, 2007, Pages 905-916

  Glémin, Sylvain ^a  

^a INSTITUT DES SCIENCES DE L EVOLUTION   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; ARTICLE; EVOLUTIONARY ADAPTATION; FERTILIZATION; GENE DELETION; GENETIC MODEL; GENETIC POLYMORPHISM; GENETIC SELECTION; MATING SYSTEM; MOLECULAR EVOLUTION; PARAMETER; POPULATION SIZE; PRIORITY JOURNAL;

ADAPTATION, PHYSIOLOGICAL; EVOLUTION, MOLECULAR; GENETICS, POPULATION; INBREEDING; MODELS, GENETIC; MUTATION; POLYMORPHISM, GENETIC; SELECTION (GENETICS);

EID: 35549007506     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.107.073601     Document Type: Article

References (49)

1. ABRAMOWITZ, M., and I. A. STEGUN, 1970 Handbook of Mathematical Functions. Dover, New York.
2. BAER, C. F., F. SHAW, C. STEDING, M. BAUMGARTNER, A. HAWKINS et al., 2005 Comparative evolutionary genetics of spontaneous mutations affecting fitness in rhabditid nematodes. Proc. Natl. Acad. Sci. USA 102: 5785-5790.
3. BAKER, H. G., 1955 Self-compatibility and establishment after "long-distance" dispersal. Evolution 9: 347-348.
4. BATAILLON, T., 2000 Estimation of spontaneous genome-wide mutation rate parameters: Wither beneficial mutations? Heredity 84: 497-501.
5. BATAILLON, T., and M. KIRKPATRICK, 2000 Inbreeding depression due to mildly deleterious mutations in finite populations: size does matter. Genet. Res. 75: 75-81.
6. BECHSGAARD, J. S., V. CASTRIC, D. CHARLESWORTH, X. VEKEMANS and M. H. SCHIERUP, 2006 The transition to self-compatibility in Arabidopsis thaliana and evolution within S-haplotypes over 10 Myr. Mol. Biol. Evol. 23: 1741-1750.
7. BENA, G., B. LEJEUNE, J. M. PROSPERI and I. OLIVIERI, 1998 Molecular phylogenetic approach for studying life-history evolution: the ambiguous example of the genus Medicago L. Proc. Biol. Sci. 265: 1141-1151.
8. BOURGUET, D., 1999 The evolution of dominance. Heredity 83(1): 1-4.
9. BOURGUET, D., and M. RAYMOND, 1997 The molecular basis of dominance relationships: the case of some recent adaptive genes. J. Evol. Biol. 11: 103-122.
10. BULMER, M., 1991 The selection-mutation-drift theory of synonymous codon usage. Genetics 129: 897-907.
11. BUSTAMANTE, C. D., R. NIELSEN, S. A. SAWYER, K. M. OLSEN, M. D. PURUGGANAN et al., 2002 The cost of inbreeding in Arabidopsis. Nature 416: 531-534.
12. CABALLERO, A., and W. G. HILL, 1992 Effects of partial inbreeding on fixation rates and variation of mutant genes. Genetics 131: 493-507.
13. CHARLESWORTH, B., 1992 Evolutionary rates in partially self-fertilizing species. Am. Nat. 140: 126-148.
14. CHARLESWORTH, B., M. T. MORGAN and D. CHARLESWORTH, 1993 The effect of deleterious mutations on neutral molecular variation. Genetics 134: 1289-1303.
15. CHARLESWORTH, D., and X. VEKEMANS, 2005 How and when did Arabidopsis thaliana become highly self-fertilizing? BioEssays 27: 472-476.
16. CHARLESWORTH, D., and S. I. WRIGHT, 2001 Breeding systems and genome evolution. Curr. Opin. Genet. Dev. 11: 685-690.
17. GLÉMIN, S., 2003 How are deleterious mutations purged? Drift versus nonrandom mating. Evolution 57: 2678-2687.
18. GLÉMIN, S., E. BAZIN and D. CHARLESWORTH, 2006 Impact of mating systems on patterns of sequence polymorphism in flowering plants. Proc. Biol. Sci. 273: 3011-3019.
19. GRAUSTEIN, A., J. M. GASPAR, J. M. WALTERS and M. F. PALOPOLI, 2002 Levels of DNA polymorphism vary with mating system in the nematode genus Caenorhabditis. Genetics 161: 99-107.
20. GUINDON, S., A. G. RODRIGO, K. A. DYER and J. P. HUELSENBECK, 2004 Modeling the site-specific variation of selection patterns along lineages. Proc. Natl. Acad. Sci. USA 101: 12957-12962.
21. HAMRICK, J. L., and M. J. W. GODT, 1996 Effects of life history traits on genetic diversity in plants species. Philos. Trans. R. Soc. Lond. B 351: 1291-1298.
22. HIGGINS, K., and M. LYNCH, 2001 Metapopulation extinction caused by mutation accumulation. Proc. Natl. Acad. Sci. USA 98: 2928-2933.
23. KEIGHTLEY, P. D., 1994 The distribution of mutation effects on viability in Drosophila melanogaster. Genetics 138: 1315-1322.
24. KIMURA, M., 1962 On the probability of fixation of mutant genes in a population. Genetics 47: 713-719.
25. LANDE, R., and D. W. SCHEMSKE, 1985 The evolution of self-fertilization and inbreeding depression in plants. I. Genetic models. Evolution 39: 24-40.
26. LOEWE, L., B. CHARLESWORTH, C. BARTOLOME and V. NOEL, 2006 Estimating selection on nonsynonymous mutations. Genetics 172: 1079-1092.
27. MAYNARD-SMITH, J., and D. HAIG, 1974 The hitch-hiking effect of a favourable gene. Genet. Res. 23: 22-35.
28. MCDONALD, J. H., and M. KREITMAN, 1991 Adaptative protein evolution at the ADH locus in Drosophila. Nature 351: 652-654.
29. MCVEAN, G. A., and B. CHARLESWORTH, 1999 A population genetic model for the evolution of synonymous codon usage: patterns and predictions. Genet. Res. 74: 145-158.
30. MUKAI, T., S. I. CHIGUSA, L. E. METTLER and J. F. CROW, 1972 Mutation rate and dominance of genes affecting viability in Drosophila melanogaster. Genetics 72: 335-355.
31. NEI, M., 1968 The frequency distribution of lethal chromosomes in finite populations. Proc. Natl. Acad. Sci. USA 60: 517-524.
32. NYBOM, H., 2004 Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Mol. Ecol. 13: 1143-1155.
33. OHTA, T., and C. C. COCKERHAM, 1974 Detrimental genes with partial selfing and effects on a neutral locus. Genet. Res. 23: 191-200.
34. PALAND, S., and M. LYNCH, 2006 Transitions to asexuality result in excess amino acid substitutions. Science 311: 990-992.
35. PHADNIS, N., and J. D. FRY, 2005 Widespread correlations between dominance and homozygous effects of mutations: implications for theories of dominance. Genetics 171: 385-392.
36. PIGANEAU, G., and A. EYRE-WALKER, 2003 Estimating the distribution of fitness effects from DNA sequence data: implications for the molecular clock. Proc. Natl. Acad. Sci. USA 100: 10335-10340.
37. RAND, D. M., and L. M. KANN, 1996 Excess amino acid polymorphism in mitochondrial DNA: contrasts among genes from Drosophila, mice, and humans. Mol. Biol. Evol. 13: 735-748.
38. ROZE, D., and F. ROUSSET, 2003 Selection and drift in subdivided populations: a straightforward method for deriving diffusion approximations and applications involving dominance, selfing and local extinctions. Genetics 165: 2153-2166.
39. SCHOEN, D. J., 2005 Deleterious mutation in related species of the plant genus Amsinckia with contrasting mating systems. Evolution 59: 2370-2377.
40. SCHOEN, D. J., and A. H. D. BROWN, 1991 Intraspecific variation in population gene diversity and effective population size correlates with the mating system in plants. Proc. Natl. Acad. Sci USA 88: 4494-4497.
41. SCHULTZ, S. T., M. LYNCH and J. H. WILLIS, 1999 Spontaneous deleterious mutation in Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 96: 11393-11398.
42. TAJIMA, F., 1983 Evolutionary relationship of DNA sequences in finite populations. Genetics 105: 437-460.
43. TAKEBAYASHI, N., and P. L. MORRELL, 2001 Is self-fertilization an evolutionary dead end? Revisiting an old hypothesis with genetic theories and a macroevolutionary approach. Am. J. Bot. 88: 1143-1150.
44. WHITLOCK, M. C., 2000 Fixation of new alleles and the extinction of small populations: drift load, beneficial alleles, and sexual selection. Evolution 54: 1855-1861.
45. WOLFRAM, S., 1996 The Mathematica Book. Cambridge University Press, Cambridge.
46. WRIGHT, S., 1937 The distribution of gene frequencies in populations. Proc. Natl. Acad. Sci. USA 23: 307-320.
47. WRIGHT, S. I., B. LAUGA and D. CHARLESWORTH, 2002 Rates and patterns of molecular evolution in inbred and outbred Arabidopsis. Mol. Biol. Evol. 19: 1407-1420.
48. WRIGHT, S. I., B. LAUGA and D. CHARLESWORTH, 2003 Subdivision and haplotype structure in natural populations of Arabidopsis lyrata. Mol. Ecol. 12: 1247-1263.
49. YANG, Z., R. NIELSEN, N. GOLDMAN and A. M. PEDERSEN, 2000 Codon-substitution models for heterogeneous selection pressure at amino acid sites. Genetics 155: 431-449.