Pattern of diversity in the genomic region near the maize domestication gene tb1

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 3, 2004, Pages 700-707

  Clark, Richard M ^a   Linton, Eric ^b,c   Messing, Joachim ^b   Doebley, John F ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b RUTGERS UNIVERSITY   (United States)

^c MICHIGAN STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

TB1 PROTEIN, ZEA MAYS; VEGETABLE PROTEIN;

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; CHROMOSOME NOR; CROP; DOMESTICATION; GENE; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENE SEQUENCE; GENETIC POLYMORPHISM; GENETIC SELECTION; GENETIC VARIABILITY; GENETICS; GENOME; HAPLOTYPE; MAIZE; MOLECULAR GENETICS; PHYLOGENY; PLANT; PLANT APICAL DOMINANCE; PRIORITY JOURNAL; SPECIES DIFFERENCE; TB1 GENE; TEOSINTE;

CHROMOSOMES, ARTIFICIAL, BACTERIAL; CROPS, AGRICULTURAL; GENES, PLANT; GENOME, PLANT; LINKAGE DISEQUILIBRIUM; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT PROTEINS; POLYMORPHISM, GENETIC; SELECTION (GENETICS); SPECIES SPECIFICITY; VARIATION (GENETICS); ZEA MAYS;

BACTERIA (MICROORGANISMS); EMBRYOPHYTA; ZEA; ZEA MAYS;

EID: 1642514950     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.2237049100     Document Type: Article

References (60)

1. Tanksley, S. D. & McCouch, S. R. (1997) Science 277, 1063-1066.
2. Buckler, E. S., IV, Thornsberry, J. M. & Kresovich, S. (2001) Genet. Res. 77, 213-218.
3. Purugganan, M. D., Boyles, A. L. & Suddith, J. I. (2000) Genetics 155, 855-862.
4. Frary, A., Nesbitt, T. C., Grandillo, S., Knaap, E., Cong, B., Liu, J., Meller, J., Elber, R., Alpert, K. B. & Tanksley, S. D. (2000) Science 289, 85-88.
5. Peng, J., Richards, D. E., Hartley, N. M., Murphy, G. P., Devos, K. M., Flintham, J. E., Beales, J., Fish, L. J., Worland, A. J., Pelica, F., et al. (1999) Nature 400, 256-261.
6. Olsen, K. M. & Purugganan, M. D. (2002) Genetics 162, 941-950.
7. Wang, R. L., Stec, A., Hey, J., Lukens, L. & Doebley, J. (1999) Nature 398, 236-239.
8. Doebley, J., Stec, A., Wendel, J. & Edwards, M. (1990) Proc. Natl. Acad. Sci. USA 87, 9888-9892.
9. Doebley, J. & Stec, A. (1991) Genetics 129, 285-295.
10. Doebley, J. & Stec, A. (1993) Genetics 134, 559-570.
11. Doebley, J., Stec, A. & Gustus, C. (1995) Genetics 141, 333-346.
12. Doebley, J., Stec, A. & Hubbard, L. (1997) Nature 386, 485-488.
13. Cubas, P., Lauter, N., Doebley, J. & Coen, E. (1999) Plant J. 18, 215-222.
14. Lukens, L. & Doebley, J. (1999) Genet. Res. 74, 291-302.
15. Hubbard, L., McSteen, P., Doebley, J. & Hake, S. (2002) Genetics 162, 1927-1935.
16. Yim, Y. S., Davis, G. L., Duru, N. A., Musket, T. A., Linton, E. W., Messing, J. W., McMullen, M. D., Soderlund, C. A., Polacco, M. L., Gardiner, J. M. & Coe, E. H., Jr. (2002) Plant Physiol. 130, 1686-1696.
17. Ewing, B. & Green, P. (1998) Genome Res. 8, 186-194.
18. Ewing, B., Hillier, L., Wendl, M. C. & Green, P. (1998) Genome Res. 8, 175-185.
19. Gordon, D., Abajian, C. & Green, P. (1998) Genome Res. 8, 195-202.
20. Ramakrishna, W., Emberton, J., Ogden, M., SanMiguel, P. & Bennetzen, J. L. (2002) Plant Cell 14, 3213-3223.
21. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990) J. Mol. Biol. 215, 403-410.
22. Mayor, C., Brudno, M., Schwartz, J. R., Poliakov, A., Rubin, E. M., Frazer, K. A., Pachter, L. S. & Dubchak, I. (2000) Bioinformatics 16, 1046-1047.
23. Bray, N., Dubchak, I. & Pachter, L. (2003) Genome Res. 13, 97-102.
24. Dubchak, I., Brudno, M., Loots, G. G., Pachter, L., Mayor, C., Rubin, E. M. & Frazer, K. A. (2000) Genome Res. 10, 1304-1306.
25. Tenaillon, M. I., Sawkins, M. C., Long, A. D., Gaut, R. L., Doebley, J. F. & Gaut, B. S. (2001) Proc. Natl. Acad. Sci. USA 98, 9161-9166.
26. Rozas, J. & Rozas, R. (1999) Bioinformatics 15, 174-175.
27. Tiffin, P. & Gaut, B. S. (2001) Genetics 158, 401-412.
28. Goloubinoff, P., Pääbo, S. & Wilson, A. C. (1993) Proc. Natl. Acad. Sci. USA 90, 1997-2001.
29. White, S. E. & Doebley, J. F. (1999) Genetics 153, 1455-1462.
30. Fay, J. C. & Wu, C. I. (2000) Genetics 155, 1405-1413.
31. Swofford, D. L. (2003) PAUP*, Phylogenctic Analysis Using Parsimony (*and Other Methods) (Sinauer, Sunderland, MA), Version 4.
32. Fu, H., Park, W., Yan, X., Zheng, Z., Shen, B. & Dooner, H. K. (2001) Proc. Natl. Acad. Sci. USA 98, 8903-8908.
33. Doebley, J. & Stec, A. (1998) Maize Genet. Coop. News Lett. 73, 82-83.
34. Takeda, T., Suwa, Y., Suzuki, M., Kitano, H., Ueguchi-Tanaka, M., Ashikari, M., Matsuoka, M. & Ueguchi, C. (2003) Plant J. 33, 513-520.
35. Mathews, S., Spangler, R. E., Mason-Gamer, R. J. & Kellogg, E. A. (2002) Int. J. Plant Sci. 163, 441-450.
36. Kellogg, E. A. (2001) Plant Physiol. 125, 1198-1205.
37. Watterson, G. A. (1975) Theor. Popul. Biol. 7, 188-193.
38. Hilton, H. & Gaut, B. S. (1998) Genetics 150, 863-872.
39. Eyre-Walker, A., Gaut, R. L., Hilton, H., Feldman, D. L. & Gaut, B. S. (1998) Proc. Natl. Acad. Sci. USA 95, 4441-4446.
40. Zhang, L., Peek, A. S., Dunams, D. & Gaut, B. S. (2002) Genetics 162, 851-860.
41. Hudson, R. R., Kreitman, M. & Aguade, M. (1987) Genetics 116, 153-159.
42. Tajima, F. (1989) Genetics 123, 585-595.
43. Fu, Y. X. & Li, W. H. (1993) Genetics 133, 693-699.
44. Kreitman, M. (2000) Annu. Rev. Genomics Hum. Genet. 1, 539-559.
45. Hanson, M. A., Gaut, B. S., Stec, A. O., Fuerstenberg, S. I., Goodman, M. M., Coe, E. H. & Doebley, J. F. (1996) Genetics 143, 1395-1407.
46. Song, R., Llaca, V. & Messing, J. (2002) Genome Res. 12, 1549-1555.
47. Song, R. & Messing, J. (2003) Proc. Natl. Acad. Sci. USA 100, 9055-9060.
48. Fu, H. & Dooner, H. K. (2002) Proc. Natl. Acad. Sci. USA 99, 9573-9578.
49. Saez, A. G., Tatarenkov, A., Barrio, E., Becerra, N. H. & Ayala, F. J. (2003) Proc. Natl. Acad. Sci. USA 100, 1793-1798.
50. Wootton, J. C., Feng, X., Ferdig, M. T., Cooper, R. A., Mu, J., Baruch, D. I., Magill, A. J. & Su, X. Z. (2002) Nature 418, 320-323.
51. Nair, S., Williams, J. T., Brockman, A., Paiphun, L., Mayxay, M., Newton, P. N., Guthmann, J. P., Smithuis, F. M., Hien, T. T., White, N. J., et al. (2003) Mol. Biol. Evol. 20, 1526-1536.
52. Remington, D. L., Thornsberry, J. M., Matsuoka, Y., Wilson, L. M., Whitt, S. R., Doebley, J., Kresovich, S., Goodman, M. M. & Buckler, E. S., IV (2001) Proc. Natl. Acad. Sci. USA 98, 11479-11484.
53. Nordborg, M. & Tavare, S. (2002) Trends Genet. 18, 83-90.
54. Saunders, M. A., Hammer, M. F. & Nachman, M. W. (2002) Genetics 162, 1849-1861.
55. Xu, X., Hsia, A. P., Zhang, L., Nikolau, B. J. & Schnable, P. S. (1995) Plant Cell 7, 2151-2161.
56. Fu, H., Zheng, Z. & Dooner, H. K. (2002) Proc. Natl. Acad. Sci. USA 99, 1082-1087.
57. Stam, M., Belele, C., Ramakrishna, W., Dorweiler, J. E., Bennetzen, J. L. & Chandler, V. L. (2002) Genetics 162, 917-930.
58. Nesbitt, T. C. & Tanksley, S. D. (2002) Genetics 162, 365-379.
59. Matsuoka, Y., Vigouroux, Y., Goodman, M. M., Sanchez, G. J., Buckler, E. & Doebley, J. (2002) Proc. Natl. Acad. Sci. USA 99, 6080-6084.
60. Wilkes, H. G. (1977) Econ. Bot. 31, 254-293.