-
1
-
-
0030053964
-
Tempo and mode of synonymous substitutions in mitochondrial DNA of primates
-
Adachi J, Hasegawa M: Tempo and mode of synonymous substitutions in mitochondrial DNA of primates. Mol Biol Evol 13: 200-208 (1996).
-
(1996)
Mol Biol Evol
, vol.13
, pp. 200-208
-
-
Adachi, J.1
Hasegawa, M.2
-
2
-
-
0027399718
-
Tempo and mode of mitochondrial DNA evolution in vertebrates at the amino acid sequence level: Rapid evolution in warm-blooded vertebrates
-
Adachi J, Cao Y, Hasegawa M: Tempo and mode of mitochondrial DNA evolution in vertebrates at the amino acid sequence level: rapid evolution in warm-blooded vertebrates. J Mol Evol 36: 270-281 (1993).
-
(1993)
J Mol Evol
, vol.36
, pp. 270-281
-
-
Adachi, J.1
Cao, Y.2
Hasegawa, M.3
-
3
-
-
0029895752
-
Rate of rbcL gene sequence evolution and species diversification in flowering plants
-
Barraclough TG, Harvey PH, Nee S: Rate of rbcL gene sequence evolution and species diversification in flowering plants. Proc R Soc Lond B 263: 589-591 (1996).
-
(1996)
Proc R Soc Lond B
, vol.263
, pp. 589-591
-
-
Barraclough, T.G.1
Harvey, P.H.2
Nee, S.3
-
4
-
-
0026778673
-
Extensive variation in evolutionary rate of rbcL gene sequences among seed plants
-
Bousquet J, Strauss SH, Doerksen AH, Price RA: Extensive variation in evolutionary rate of rbcL gene sequences among seed plants. Proc Natl Acad Sci USA 89: 7844-7848 (1992).
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 7844-7848
-
-
Bousquet, J.1
Strauss, S.H.2
Doerksen, A.H.3
Price, R.A.4
-
5
-
-
0028042495
-
Phylogenetic relationships among the genera Taxoidiacea and Cupressaceae: Evidence from rbcL sequences
-
Brunsfeld SJ, Soltis PS, Soltis DE, Gadek PA, Quinn CJ et al.: Phylogenetic relationships among the genera Taxoidiacea and Cupressaceae: evidence from rbcL sequences. Syst Bot 19: 253-262 (1994).
-
(1994)
Syst Bot
, vol.19
, pp. 253-262
-
-
Brunsfeld, S.J.1
Soltis, P.S.2
Soltis, D.E.3
Gadek, P.A.4
Quinn, C.J.5
-
6
-
-
0003377582
-
Tribal relationships in Onagraceae: Implication from rbcL sequence data
-
Conti E, Fishbach, A, Sytsma KJ: Tribal relationships in Onagraceae: implication from rbcL sequence data. Ann Miss Bot Gard 80: 672-685 (1993).
-
(1993)
Ann Miss Bot Gard
, vol.80
, pp. 672-685
-
-
Conti, E.1
Fishbach, A.2
Sytsma, K.J.3
-
7
-
-
0000347869
-
Tests of separate families of hypotheses
-
Cox DR: Tests of separate families of hypotheses. Proc 4th Berkeley Symp. 1: 105-123 (1961).
-
(1961)
Proc 4th Berkeley Symp.
, vol.1
, pp. 105-123
-
-
Cox, D.R.1
-
9
-
-
0030888864
-
Correlated rates of synonymous site evolution among plant genomes
-
Eyre-Walker A, Gaut BS: Correlated rates of synonymous site evolution among plant genomes. Mol Biol Evol 14: 455-460 (1997).
-
(1997)
Mol Biol Evol
, vol.14
, pp. 455-460
-
-
Eyre-Walker, A.1
Gaut, B.S.2
-
10
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein J: Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17: 368-376 (1981).
-
(1981)
J Mol Evol
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
11
-
-
0030034795
-
A hidden Markov Model approach to variation among sites in rate of evolution
-
Felsenstein J, Churchill GA: A hidden Markov Model approach to variation among sites in rate of evolution. Mol Biol Evol 13: 93-104 (1996).
-
(1996)
Mol Biol Evol
, vol.13
, pp. 93-104
-
-
Felsenstein, J.1
Churchill, G.A.2
-
12
-
-
0002557518
-
Molecular clocks and nucleotide substitution rates in higher plants
-
Gaut BS: Molecular clocks and nucleotide substitution rates in higher plants. Evol Biol 30: 93-120 (1998).
-
(1998)
Evol Biol
, vol.30
, pp. 93-120
-
-
Gaut, B.S.1
-
13
-
-
0028244278
-
Detecting substitution-rate heterogeneity among regions of a nucleotide sequence
-
Gaut BS, Weir BS: Detecting substitution-rate heterogeneity among regions of a nucleotide sequence. Mol Biol Evol 11: 620-629 (1994).
-
(1994)
Mol Biol Evol
, vol.11
, pp. 620-629
-
-
Gaut, B.S.1
Weir, B.S.2
-
14
-
-
0026469557
-
Relative rates of nucleotide substitution at the rbcL locus of monocotyledonous plants
-
Gaut BS, Muse SV, Clark WD, Clegg MT: Relative rates of nucleotide substitution at the rbcL locus of monocotyledonous plants. J Mol Evol 35: 292-303 (1992).
-
(1992)
J Mol Evol
, vol.35
, pp. 292-303
-
-
Gaut, B.S.1
Muse, S.V.2
Clark, W.D.3
Clegg, M.T.4
-
15
-
-
0027611630
-
Relative rates of nucleotide substitution in the chloroplast genome
-
Gaut BS, Muse SV, Clegg MT: Relative rates of nucleotide substitution in the chloroplast genome. Mol Phyl Evol 2: 89-96 (1993).
-
(1993)
Mol Phyl Evol
, vol.2
, pp. 89-96
-
-
Gaut, B.S.1
Muse, S.V.2
Clegg, M.T.3
-
16
-
-
0030816744
-
Comparisons of the molecular evolutionary process at rbcL and ndhF in the grass family (Poaceae)
-
Gaut BS, Clark LG, Wendel JF, Muse SV: Comparisons of the molecular evolutionary process at rbcL and ndhF in the grass family (Poaceae). Mol Biol Evol 14: 769-777 (1997).
-
(1997)
Mol Biol Evol
, vol.14
, pp. 769-777
-
-
Gaut, B.S.1
Clark, L.G.2
Wendel, J.F.3
Muse, S.V.4
-
17
-
-
0027526039
-
Statistical tests of models of DNA substitution
-
Goldman N: Statistical tests of models of DNA substitution. J Mol Evol 36: 182-198 (1993).
-
(1993)
J Mol Evol
, vol.36
, pp. 182-198
-
-
Goldman, N.1
-
18
-
-
0028168856
-
Codon-based model of nucleotide substitution for protein coding DNA sequences
-
Goldman N, Yang ZH: Codon-based model of nucleotide substitution for protein coding DNA sequences. Mol Biol Evol 11: 725-736 (1994).
-
(1994)
Mol Biol Evol
, vol.11
, pp. 725-736
-
-
Goldman, N.1
Yang, Z.H.2
-
19
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa M, Kishino H, Yano T: Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22: 160-174 (1985).
-
(1985)
J Mol Evol
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
20
-
-
0031436890
-
Phylogeny estimation and hypothesis testing using maximum likelihood
-
Huelsenbeck JP, Crandall KA: Phylogeny estimation and hypothesis testing using maximum likelihood. Annu Rev Ecol Syst 28: 437-466 (1997).
-
(1997)
Annu Rev Ecol Syst
, vol.28
, pp. 437-466
-
-
Huelsenbeck, J.P.1
Crandall, K.A.2
-
21
-
-
0030902563
-
Phylogenetic methods come of age: Testing hypotheses in an evolutionary context
-
Huelsenbeck JP, Rannala B: Phylogenetic methods come of age: testing hypotheses in an evolutionary context. Science 276: 227-232 (1997).
-
(1997)
Science
, vol.276
, pp. 227-232
-
-
Huelsenbeck, J.P.1
Rannala, B.2
-
22
-
-
0000732090
-
Evolution of protein molecules
-
Munro HN (ed), Academic Press, New York
-
Jukes TH, Cantor CR: Evolution of protein molecules. In: Munro HN (ed), Mammalian Protein Metabolism, pp. 21-32. Academic Press, New York (1969).
-
(1969)
Mammalian Protein Metabolism
, pp. 21-32
-
-
Jukes, T.H.1
Cantor, C.R.2
-
23
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura M: A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120 (1980).
-
(1980)
J Mol Evol
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
24
-
-
0030914649
-
Molecular evolution of angiosperm mitochondrial introns and exons
-
Laroche J, Li P, Maggia L, Bousquet J: Molecular evolution of angiosperm mitochondrial introns and exons. Proc Natl Acad Sci USA 94: 5722-5727 (1997).
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 5722-5727
-
-
Laroche, J.1
Li, P.2
Maggia, L.3
Bousquet, J.4
-
25
-
-
0026486403
-
Relative-rate test for nucleotide substitutions between two lineages
-
Li P, Bousquet J: Relative-rate test for nucleotide substitutions between two lineages. Mol Biol Evol 9: 1185-1189 (1992).
-
(1992)
Mol Biol Evol
, vol.9
, pp. 1185-1189
-
-
Li, P.1
Bousquet, J.2
-
26
-
-
0029784030
-
Prolonged final extension time increases cloning efficiency of PCR products
-
Li Q, Guy C: Prolonged final extension time increases cloning efficiency of PCR products. Biotechniques 21: 192-196 (1996).
-
(1996)
Biotechniques
, vol.21
, pp. 192-196
-
-
Li, Q.1
Guy, C.2
-
27
-
-
0022005270
-
A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
-
Li W-H, Wu C-I, Luo C-C: A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol Biol Evol 2: 150-174 (1985).
-
(1985)
Mol Biol Evol
, vol.2
, pp. 150-174
-
-
Li, W.-H.1
Wu, C.-I.2
Luo, C.-C.3
-
28
-
-
0023074036
-
An evaluation of the molecular clock hypothesis using mammalian DNA sequences
-
Li W-H, Tanimura M, Sharp P: An evaluation of the molecular clock hypothesis using mammalian DNA sequences. J Mol Evol 25: 330-342 (1987).
-
(1987)
J Mol Evol
, vol.25
, pp. 330-342
-
-
Li, W.-H.1
Tanimura, M.2
Sharp, P.3
-
29
-
-
0028900996
-
Evolutionary analyses of DNA sequences subject to constraints on secondary structure
-
Muse SV: Evolutionary analyses of DNA sequences subject to constraints on secondary structure. Genetics 139: 1429-1439 (1995).
-
(1995)
Genetics
, vol.139
, pp. 1429-1439
-
-
Muse, S.V.1
-
30
-
-
0030054305
-
Estimating synonymous and nonsynonymous substitution rates
-
Muse SV: Estimating synonymous and nonsynonymous substitution rates. Mol Biol Evol 13: 105-114 (1996).
-
(1996)
Mol Biol Evol
, vol.13
, pp. 105-114
-
-
Muse, S.V.1
-
31
-
-
0028024626
-
A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome
-
Muse SV, Gaut BS: A likelihood approach for comparing synonymous and nonsynonymous nucleotide substitution rates, with application to the chloroplast genome. Mol Biol Evol 11: 715-724 (1994).
-
(1994)
Mol Biol Evol
, vol.11
, pp. 715-724
-
-
Muse, S.V.1
Gaut, B.S.2
-
32
-
-
0030984551
-
Comparing patterns of nucleotide patterns among chloroplast loci using the relative ratio test
-
Muse SV, Gaut BS: Comparing patterns of nucleotide patterns among chloroplast loci using the relative ratio test. Genetics 146: 393-399 (1997).
-
(1997)
Genetics
, vol.146
, pp. 393-399
-
-
Muse, S.V.1
Gaut, B.S.2
-
33
-
-
0026670564
-
Testing for equality of evolutionary rates
-
Muse SV, Weir BS: Testing for equality of evolutionary rates. Genetics 132: 269-276 (1992).
-
(1992)
Genetics
, vol.132
, pp. 269-276
-
-
Muse, S.V.1
Weir, B.S.2
-
34
-
-
0028275088
-
High rates of nucleotide substitution rate in nuclear small-subunit (18S) rDNA from holoparasitic flowering plants
-
Nickrent DL, Starr EM: High rates of nucleotide substitution rate in nuclear small-subunit (18S) rDNA from holoparasitic flowering plants. J Mol Evol 39: 62-70 (1994).
-
(1994)
J Mol Evol
, vol.39
, pp. 62-70
-
-
Nickrent, D.L.1
Starr, E.M.2
-
35
-
-
0002880305
-
Molecular phylogenetic and evolutionary studies of parasitic plants
-
Soltis PS, Doyle JJ, Soltis DE (eds), Kluwer Academic Publishers, Boston
-
Nickrent DL, dePamphilis CW, Wolfe AD, Colwell AE, Young ND et al.: Molecular phylogenetic and evolutionary studies of parasitic plants. In: Soltis PS, Doyle JJ, Soltis DE (eds), Molecular Systematics of Plants 2: DNA sequencing, pp. 211-241. Kluwer Academic Publishers, Boston (1998).
-
(1998)
Molecular Systematics of Plants 2: DNA Sequencing
, pp. 211-241
-
-
Nickrent, D.L.1
DePamphilis, C.W.2
Wolfe, A.D.3
Colwell, A.E.4
Young, N.D.5
-
36
-
-
0031880125
-
A codon-based model designed to describe lentiviral evolution
-
Pederson A-M: A codon-based model designed to describe lentiviral evolution. Mol Biol Evol 15: 1069-1081 (1998).
-
(1998)
Mol Biol Evol
, vol.15
, pp. 1069-1081
-
-
Pederson, A.-M.1
-
38
-
-
0014186296
-
Immunological time scale for hominid evolution
-
Sarich VM, Wilson AC: Immunological time scale for hominid evolution. Science 158: 1200-1203 (1967).
-
(1967)
Science
, vol.158
, pp. 1200-1203
-
-
Sarich, V.M.1
Wilson, A.C.2
-
39
-
-
0039863095
-
Chloroplast DNA variation and evolution in the Juglandaceae
-
Smith JF, Doyle JJ: Chloroplast DNA variation and evolution in the Juglandaceae. Am J Bot 78: 730 (1986).
-
(1986)
Am J Bot
, vol.78
, pp. 730
-
-
Smith, J.F.1
Doyle, J.J.2
-
40
-
-
0002408597
-
Coevolution of grasses and herbivores
-
Stebbins GL: Coevolution of grasses and herbivores. Ann Miss Bot Gard 68: 75-86 (1981).
-
(1981)
Ann Miss Bot Gard
, vol.68
, pp. 75-86
-
-
Stebbins, G.L.1
-
41
-
-
0001336205
-
Phylogenetic inference
-
Hillis DM, Mortiz C, Mable BK (eds), Sinauer Associates, Inc., Sunderland, MA
-
Swofford DL, Olsen GJ, Waddell PJ, Hillis DM: Phylogenetic inference. In: Hillis DM, Mortiz C, Mable BK (eds), Molecular Systematics, pp. 407-514. Sinauer Associates, Inc., Sunderland, MA (1996).
-
(1996)
Molecular Systematics
, pp. 407-514
-
-
Swofford, D.L.1
Olsen, G.J.2
Waddell, P.J.3
Hillis, D.M.4
-
42
-
-
0027157960
-
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
-
41a. Tamura K, Nei M: Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10: 512-526 (1993).
-
(1993)
Mol Biol Evol
, vol.10
, pp. 512-526
-
-
Tamura, K.1
Nei, M.2
-
43
-
-
0002671410
-
Some probabilistic and statistical problems in the analysis of DNA sequences
-
Miura RM (ed.), American Mathematic Society, Providence, RI
-
Tavare S: Some probabilistic and statistical problems in the analysis of DNA sequences. In: Miura RM (ed.), Lecture on Mathematics in the Life Sciences, pp. 57-86. American Mathematic Society, Providence, RI (1986).
-
(1986)
Lecture on Mathematics in the Life Sciences
, pp. 57-86
-
-
Tavare, S.1
-
44
-
-
0029985399
-
Combining protein evolution and secondary structure
-
Thorne JL, Goldman N, Jones DT: Combining protein evolution and secondary structure. Mol Biol Evol 13: 666-673 (1996).
-
(1996)
Mol Biol Evol
, vol.13
, pp. 666-673
-
-
Thorne, J.L.1
Goldman, N.2
Jones, D.T.3
-
45
-
-
0028874337
-
Neighbor joining and maximum likelihood with RNA sequences: Addressing the interdependence of sites
-
Tillier ERM, Collins RA: Neighbor joining and maximum likelihood with RNA sequences: addressing the interdependence of sites. Mol Biol Evol 12: 7-15 (1995).
-
(1995)
Mol Biol Evol
, vol.12
, pp. 7-15
-
-
Tillier, E.R.M.1
Collins, R.A.2
-
46
-
-
0023462635
-
Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast and nuclear DNAs
-
Wolfe KH, Li W-H, Sharp PM: Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast and nuclear DNAs. Proc Natl Acad Sci USA 84: 9054-9058 (1987).
-
(1987)
Proc Natl Acad Sci USA
, vol.84
, pp. 9054-9058
-
-
Wolfe, K.H.1
Li, W.-H.2
Sharp, P.M.3
-
47
-
-
0024712231
-
Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data
-
Wolfe KH, Gouy M, Yang Y-W, Sharp PM, Li W-H: Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data. Proc Natl Acad Sci USA 86: 6201-6205 (1989).
-
(1989)
Proc Natl Acad Sci USA
, vol.86
, pp. 6201-6205
-
-
Wolfe, K.H.1
Gouy, M.2
Yang, Y.-W.3
Sharp, P.M.4
Li, W.-H.5
-
48
-
-
0000175619
-
Rates of synonymous substitution in plant nuclear genes
-
Wolfe KH, Sharp PM, Li W-H: Rates of synonymous substitution in plant nuclear genes. J Mol Evol 29: 208-211 (1989).
-
(1989)
J Mol Evol
, vol.29
, pp. 208-211
-
-
Wolfe, K.H.1
Sharp, P.M.2
Li, W.-H.3
-
49
-
-
0000378875
-
Evidence for higher rates of nucleotide substitution in rodents than in man
-
Wu C-I, Li W-H: Evidence for higher rates of nucleotide substitution in rodents than in man. Proc Natl Acad Sci USA 82: 1741-1745 (1985).
-
(1985)
Proc Natl Acad Sci USA
, vol.82
, pp. 1741-1745
-
-
Wu, C.-I.1
Li, W.-H.2
-
50
-
-
0027132974
-
Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites
-
Yang Z: Maximum-likelihood estimation of phylogeny from DNA sequences when substitution rates differ over sites. Mol Biol Evol 10: 1396-1401 (1993).
-
(1993)
Mol Biol Evol
, vol.10
, pp. 1396-1401
-
-
Yang, Z.1
-
51
-
-
0028214103
-
Estimating the pattern of nucleotide substitution
-
Yang Z: Estimating the pattern of nucleotide substitution. J Mol Evol 39: 105-111 (1994).
-
(1994)
J Mol Evol
, vol.39
, pp. 105-111
-
-
Yang, Z.1
-
52
-
-
0028813337
-
A space-time process model for the evolution of DNA sequences
-
Yang Z: A space-time process model for the evolution of DNA sequences. Genetics 139: 993-1005 (1995).
-
(1995)
Genetics
, vol.139
, pp. 993-1005
-
-
Yang, Z.1
|