Genetic architecture and adaptive significance of the selfing syndrome in capsella

Evolution

Volumn 66, Issue 5, 2012, Pages 1360-1374

  Slotte, Tanja ^a,b   Hazzouri, Khaled M ^b   Stern, David ^c,d   Andolfatto, Peter ^c   Wright, Stephen I ^b,e  

^a UPPSALA UNIVERSITY   (Sweden)

^b UNIVERSITY OF TORONTO   (Canada)

^c PRINCETON UNIVERSITY   (United States)

^d HOWARD HUGHES MEDICAL INSTITUTE   (United States)

^e UNIVERSITY OF TORONTO   (Canada)

Author keywords

Floral evolution; Mating system shift; Next generation sequencing; Population genetics; Quantitative trait locus mapping

Indexed keywords

PLANT DNA;

ADAPTIVE RADIATION; AUTOGAMY; DIVERGENCE; FLOWERING; GENERATION TIME; GENETIC ANALYSIS; GENETIC STRUCTURE; GENOTYPE; HERB; POPULATION STRUCTURE; QUANTITATIVE ANALYSIS; REPRODUCTIVE STRATEGY; SELECTION;

ARTICLE; CAPSELLA; CHROMOSOME MAP; DNA SEQUENCE; EVOLUTION; FLOWER; GENETIC MARKER; GENETIC SELECTION; GENETICS; GENOTYPE; HISTOLOGY; HYBRIDIZATION; MULTILOCUS SEQUENCE TYPING; PHENOTYPE; PHYSIOLOGY; POLLINATION; POLYMERASE CHAIN REACTION; QUANTITATIVE TRAIT LOCUS; REPRODUCTION; SELF FERTILIZATION; SELF-INCOMPATIBILITY (PLANT);

BIOLOGICAL EVOLUTION; CAPSELLA; CHROMOSOME MAPPING; DNA, PLANT; FLOWERS; GENETIC MARKERS; GENOTYPE; HYBRIDIZATION, GENETIC; MULTILOCUS SEQUENCE TYPING; PHENOTYPE; POLLINATION; POLYMERASE CHAIN REACTION; QUANTITATIVE TRAIT LOCI; REPRODUCTION; SELECTION, GENETIC; SELF-FERTILIZATION; SELF-INCOMPATIBILITY IN FLOWERING PLANTS; SEQUENCE ANALYSIS, DNA;

CAPSELLA (ANGIOSPERM); CAPSELLA GRANDIFLORA; CAPSELLA RUBELLA; MAGNOLIOPHYTA; RUBELLA;

EID: 84860127658     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1111/j.1558-5646.2011.01540.x     Document Type: Article

References (53)

1. Abramoff, M. D., P. J. Magelhaes, and S. J. Ram 2004. Image processing with Image J. Biophotonics Int. 11:36-42.
2. Altschul, S. F., W. Gish, W. Miller, E. W. Myers, and D. J. Lipman 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
3. Andolfatto, P. D. 2007. Hitchhiking effects of recurrent beneficial amino acid substitutions in Drosophila melanogaster. Genome Res. 17:1755-1762.
4. Andolfatto, P., D. Davison, D. Erezyilmaz, T. T. Hu, J. Mast, T. Sunayama-Morita, and D. L. Stern 2011. Multiplexed shotgun genotyping for rapid and efficient genetic mapping. Genome Res. 21:610-617.
5. Arends, D., P. Prins, R. C. Jansen, and K. W. Broman 2010. R/qtl: high-throughput multiple QTL mapping. Bioinformatics 26:2990-2992.
6. Ashman, T., and C. Majetic 2006. Genetic constraints on floral evolution: a review and evaluation of patterns. Heredity 96:343-352.
7. Barrett, S. C. H. 2002. The evolution of plant sexual diversity. Nat. Rev. Genet. 3:274-284.
8. Barrett, S. C. H., and Harder, L. D. 1996. Ecology and evolution of plant mating. Trends Ecol. Evol. 11:73-79.
9. Beavis, W. D. 1994. The power and deceit of QTL experiments: lessons from comparative QTL studies. Pp. 250-266 in D. B. Wilkinson, ed. Proceedings of the 49th Annual Corn and Sorghum Research Conference. American Seed Trade Organization, Washington, DC
10. Bernacchi, D., and S. D. Tanksley 1997. An interspecific backcross of Lycopersicon esculentum x L. hirsutum: linkage analysis and a QTL study of sexual compatibility factors and floral traits. Genetics 147:861-877.
11. Boivin, K., A. Acarkan, R. Mbulu, O. Clarenz, and R. Schmidt 2004. The Arabidopsis genome sequence as a tool for genome analysis in Brassicaceae. A comparison of the Arabidopsis and Capsella rubella genomes. Plant Physiol. 135:735-744.
12. Broman, K. 2010. Genetic map construction with R/qtl. Technical Report #214University of Wisconsin-Madison, Department of Biostatistics and Medical Informatics.
13. Broman, K. W., and S. Sen 2009. A guide to QTL mapping with R/qtl. Springer, New York, NY
14. Broman, K. W., H. Wu, S. Sen, and G. A. Churchill 2003. R/qtl: QTL mapping in experimental crosses. Bioinformatics 19:889-890.
15. Charlesworth, D. 2006. Evolution of plant breeding systems. Curr. Biol. 16:R726-R735.
16. Charlesworth, D., and B. Charlesworth 1981. Allocation of resources to male and female functions in hermaphrodites. Biol. J. Linn. Soc. 15:57-74.
17. Charlesworth, D., and S. I. Wright 2001. Breeding systems and genome evolution. Curr. Opin. Genet. Dev. 11:685-690.
18. Chen, K.-Y., B. Cong, R. Wing, J. Vrebalov, and S. D. Tanksley 2007. Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes. Science 318:643-645.
19. Darwin, C. 1876. The effects of cross and self fertilization in the vegetable kingdom. John Murray, London, U. K
20. Eckert, C. G., K. E. Samis, and S. Dart 2006. Reproductive assurance and the evolution of uniparental reproduction in flowering plants. Pp. 183-203 in Harder, L. D., and S. C. H. Barrett, eds. Ecology and evolution of flowers. Oxford Univ. Press, Oxford, U. K
21. Fishman, L., and J. H. Willis 2008. Pollen limitation and natural selection on floral characters in the yellow monkeyflower, Mimulus guttatus. New Phytol 177:802-810.
22. Fishman, L., A. J. Kelly, E. Morgan, and J. H. Willis 2001. A genetic map in the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions. Genetics 159:1701-1716.
23. Fishman, L., A. Kelly, and J. Willis 2002. Minor quantitative trait loci underlie floral traits associated with mating system divergence in Mimulus. Evolution 56:2138-2155.
24. Fishman, L., J. Aagaard, and J. C. Tuthill 2008. Toward the evolutionary genomics of gametophytic divergence: patterns of transmission ratio distortion in monkeyflower (Mimulus) hybrids reveal a complex genetic basis for conspecific pollen precedence. Evolution 62:2958-2970.
25. Foxe, J., T. Slotte, E. Stahl, B. Neuffer, H. Hurka, and S. Wright 2009. Recent speciation associated with the evolution of selfing in Capsella. Proc Natl. Acad. Sci. USA 106:5241-5245.
26. Georgiady, M. S., R. W. Whitkus, and E. M. Lord 2002. Genetic analysis of traits distinguishing outcrossing and self-pollinating forms of currant tomato, Lycopersicon pimpinellifolium (Jusl.) Mill. Genetics 161:333-344.
27. Goodwillie, C., C. Ritland, and K. Ritland 2006. The genetic basis of floral traits associated with mating system evolution in Leptosiphon (Polemoniaceae): an analysis of quantitative trait loci. Evolution 60:491-504.
28. Grillo, M., C. Li, A. Fowlkes, T. Briggeman, A. Zhou, D. Schemske, and T. Sang 2009. Genetic architecture for the adaptive origin of annual wild rice, Oryza nivara. Evolution 63:870-883.
29. Guo, Y., J. Bechsgaard, T. Slotte, B. Neuffer, M. Lascoux, D. Weigel, and M. Schierup 2009. Recent speciation of Capsella rubella from Capsella grandiflora, associated with loss of self-incompatibility and an extreme bottleneck. Proc Natl. Acad. Sci. USA 106:5246-5251.
30. Haddrill, P., D. Bachtrog, and P. Andolfatto 2008. Positive and negative selection on noncoding DNA in Drosophila simulans. Mol. Biol. Evol. 25:1825-1834
31. Hamblin, M. T., E. S. Buckler, and J.-L. Jannink 2011. Population genetics of genomics-based crop improvement methods. Trends Genet. 27:98-106.
32. Hurka, H., and B. Neuffer 1997. Evolutionary processes in the genus Capsella (Brassicaceae). Plant Syst. Evol. 206:295-316.
33. Jansen, R. C. 1993. Interval mapping of multiple quantitative trait loci. Genetics 135:205-211.
34. Jansen, R. C., and P. Stam 1994. High resolution of quantitative traits into multiple loci via interval mapping. Genetics 136:1447-1455.
35. Kearns, C. A., and D. W. Inouye 1993. Techniques for pollination biologists. Univ. of Colorado Press, Niwot, CO
36. Lande, R., and D. W. Schemske 1985. The evolution of self-fertilization and inbreeding depression in plants. I. Genetic models. Evolution 39:24-40.
37. Li, H., and R. Durbin 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760.
38. Lin, J., and K. Ritland 1997. Quantitative trait loci differentiating the outbreeding Mimulus guttatus from the inbreeding M. platycalyx. Genetics 146:1115-1121.
39. Moeller, D., and M. Geber 2005. Ecological context of the evolution of self-pollination in Clarkia xantiana: Population size, plant communities, and reproductive assurance. Evolution 59:786-799.
40. Moyle, L. C. and E. B. Graham 2006. Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Genome-wide associations between hybrid sterility QTL and marker transmission ratio distortion. Mol. Biol. Evol. 23:973-980.
41. Nasrallah, J. B., P. Liu, S. Sherman-Broyles, R. Schmidt, and M. E. Nasrallah 2007. Epigenetic mechanisms for breakdown of self-incompatibility in interspecific hybrids. Genetics 175:1965-1973.
42. Noor, M. A., A. L. Cunningham, and J. C. Larkin 2001. Consequences of recombination rate variation on quantitative trait locus mapping studies. Simulations based on the Drosophila melanogaster genome. Genetics 159:581-588.
43. Ornduff, R. 1969. Reproductive biology in relation to systematics. Taxon 18:121-133.
44. Orr, H. A. 1998. Testing natural selection vs. genetic drift in phenotypic evolution using quantitative trait locus data. Genetics 149:2099-2104.
45. Qiu, S., K. Zeng, T. Slotte, S. I. Wright, and D. Charlesworth 2011. Reduced efficacy of natural selection on codon usage bias in selfing Arabidopsis and Capsella species. Genome Biol. Evol. 3:868-880.
46. Rieseberg, L. H., S. J. Baird, and K. A. Gardner 2000. Hybridization, introgression, and linkage evolution. Plant Mol. Biol. 42:205-224.
47. Riley, H. P. 1934 A further test showing the dominance of self-fertility to self-sterility in shepherd's purse. Am. Nat. 68:60-64.
48. Sicard, A., and M. Lenhard 2011. The selfing syndrome: a model for studying the genetic and evolutionary basis of morphological adaptation in plants. Ann. Bot. 107:1433-1443.
49. Sicard, A., N. Stacey, K. Hermann, J. Dessoly, B. Neuffer, and M. Lenhard 2011. Genetics, evolution, and adaptive significance of the selfing syndrome in the genus Capsella. Plant Cell 23:3156-3171.
50. Slotte, T., J. P. Foxe, K. M. Hazzouri, and S. I. Wright 2010. Genome-wide evidence for efficient positive and purifying selection in Capsella grandiflora, a plant species with a large effective population size. Mol. Biol. Evol. 27:1813-1821.
51. Stebbins, G. L. 1950. Variation and evolution in plants. Columbia Univ. Press, New York
52. St. Onge, K. R. T.. Källman, T. Slotte, M. Lascoux, and A. E. Palmé 2011. Contrasting demographic history and population structure in Capsella rubella and Capsella grandiflora, two closely related species with different mating systems. Mol. Ecol. 20:3306-3320.
53. Xu, S., and W. R. Atchley 1996. Mapping quantitative trait loci for complex binary diseases using line crosses. Genetics 143:1417-1424.