-
1
-
-
84865403600
-
Nutritional quality and health benefits of chickpea (Cicer arietinum L.): A review
-
Jukanti, A.K., Gaur, P.M., Gowda, C.L. & Chibbar, R.N. Nutritional quality and health benefits of chickpea (Cicer arietinum L.): a review. Br. J. Nutr. 108, S11-S26 (2012).
-
(2012)
Br. J. Nutr
, vol.108
-
-
Jukanti, A.K.1
Gaur, P.M.2
Gowda, C.L.3
Chibbar, R.N.4
-
2
-
-
0002618412
-
Origin, history and taxonomy of chickpea
-
in (eds. Saxena, M.C. & Singh, K.B.) (C.A.B. International)
-
van der Maesen, L.J.G. Origin, history and taxonomy of chickpea in The Chickpea (eds. Saxena, M.C. & Singh, K.B.) 11-34 (C.A.B. International, 1987).
-
(1987)
The Chickpea
, pp. 11-34
-
-
Van Der Maesen, L.J.G.1
-
3
-
-
0000171438
-
Domestication of pulses in the old world: Legumes were companions of wheat and barley when agriculture began in the Near East
-
Zohary, D. & Hopf, M. Domestication of pulses in the old world: legumes were companions of wheat and barley when agriculture began in the Near East. Science 182, 887-894 (1973).
-
(1973)
Science
, vol.182
, pp. 887-894
-
-
Zohary, D.1
Hopf, M.2
-
4
-
-
79954924396
-
Legume genomics and breeding
-
Varshney, R.K., Thudi, M., May, G.D. & Jackson, S.A. Legume genomics and breeding. Plant Breed. Rev. 33, 257-304 (2010).
-
(2010)
Plant Breed. Rev
, vol.33
, pp. 257-304
-
-
Varshney, R.K.1
Thudi, M.2
May, G.D.3
Jackson, S.A.4
-
5
-
-
31044449454
-
CDC Frontier kabuli chickpea
-
Warkentin, T. et al. CDC Frontier kabuli chickpea. Can. J. Plant Sci. 85, 909-910 (2005).
-
(2005)
Can. J. Plant Sci
, vol.85
, pp. 909-910
-
-
Warkentin, T.1
-
6
-
-
84863564349
-
Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes
-
Hiremath, P.J. et al. Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes. Plant Biotechnol. J. 10, 716-732 (2012).
-
(2012)
Plant Biotechnol. J
, vol.10
, pp. 716-732
-
-
Hiremath, P.J.1
-
7
-
-
84860612585
-
Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.)
-
Thudi, M. et al. Novel SSR markers from BAC-end sequences, DArT arrays and a comprehensive genetic map with 1,291 marker loci for chickpea (Cicer arietinum L.). PLoS ONE 6, e27275 (2011).
-
(2011)
PLoS ONE
, vol.6
-
-
Thudi, M.1
-
8
-
-
80052500402
-
Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa
-
Hiremath, P.J. et al. Large-scale transcriptome analysis in chickpea (Cicer arietinum L.), an orphan legume crop of the semi-arid tropics of Asia and Africa. Plant Biotechnol. J. 9, 922-931 (2011).
-
(2011)
Plant Biotechnol. J
, vol.9
, pp. 922-931
-
-
Hiremath, P.J.1
-
9
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
Bairoch, A. & Apweiler, R. The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 28, 45-48 (2000).
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
-
10
-
-
0034800374
-
InterProScan-an integration platform for the signature recognition methods in InterPro
-
Zdobnov, E.M. & Apweiler, R. InterProScan-an integration platform for the signature recognition methods in InterPro. Bioinformatics 17, 847-848 (2001).
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
11
-
-
34249848751
-
CEGMA: A pipeline to accurately annotate core genes in eukaryotic genomes
-
Parra, G., Bradnam, K. & Korf, I. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 23, 1061-1067 (2007).
-
(2007)
Bioinformatics
, vol.23
, pp. 1061-1067
-
-
Parra, G.1
Bradnam, K.2
Korf, I.3
-
12
-
-
0742323538
-
Endosymbiotic gene transfer: Organelle genomes forge eukaryotic chromosomes
-
Timmis, J.N. et al. Endosymbiotic gene transfer: organelle genomes forge eukaryotic chromosomes. Nat. Rev. Genet. 5, 123-135 (2004).
-
(2004)
Nat. Rev. Genet
, vol.5
, pp. 123-135
-
-
Timmis, J.N.1
-
13
-
-
84355166513
-
The Medicago genome provides insight into the evolution of rhizobial symbioses
-
Young, N.D. et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature 480, 520-524 (2011).
-
(2011)
Nature
, vol.480
, pp. 520-524
-
-
Young, N.D.1
-
14
-
-
84862956715
-
Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers
-
Varshney, R.K. et al. Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nat. Biotechnol. 30, 83-89 (2012).
-
(2012)
Nat. Biotechnol
, vol.30
, pp. 83-89
-
-
Varshney, R.K.1
-
15
-
-
74549221016
-
Genome sequence of the palaeopolyploid soybean
-
Schmutz, J. et al. Genome sequence of the palaeopolyploid soybean. Nature 463, 178-183 (2010).
-
(2010)
Nature
, vol.463
, pp. 178-183
-
-
Schmutz, J.1
-
16
-
-
0033103907
-
Molecular structure and chromosomal localization of major repetitive DNA families in the chickpea (Cicer arietinum L.) genome
-
Staginnus, C., Winter, P., Desel, C., Schmidt, T. & Kahl, G. Molecular structure and chromosomal localization of major repetitive DNA families in the chickpea (Cicer arietinum L.) genome. Plant Mol. Biol. 39, 1037-1050 (1999).
-
(1999)
Plant Mol. Biol
, vol.39
, pp. 1037-1050
-
-
Staginnus, C.1
Winter, P.2
Desel, C.3
Schmidt, T.4
Kahl, G.5
-
17
-
-
82955167893
-
Integration of genetic and physical maps of the chickpea (Cicer arietinum L.) genome using flow-sorted chromosomes
-
Zatloukalova, P. et al. Integration of genetic and physical maps of the chickpea (Cicer arietinum L.) genome using flow-sorted chromosomes. Chromosome Res. 19, 729-739 (2011).
-
(2011)
Chromosome Res
, vol.19
, pp. 729-739
-
-
Zatloukalova, P.1
-
18
-
-
77955362800
-
Polyploidy did not predate the evolution of nodulation in all legumes
-
Cannon, S.B. et al. Polyploidy did not predate the evolution of nodulation in all legumes. PLoS ONE 5, e11630 (2010).
-
(2010)
PLoS ONE
, vol.5
-
-
Cannon, S.B.1
-
19
-
-
25144446148
-
Evolutionary rates analysis of Leguminosae implicates a rapid diversification of lineages during the tertiary
-
Lavin, M., Herendeen, P.S. & Wojciechowski, M.F. Evolutionary rates analysis of Leguminosae implicates a rapid diversification of lineages during the tertiary. Syst. Biol. 54, 575-594 (2005).
-
(2005)
Syst. Biol
, vol.54
, pp. 575-594
-
-
Lavin, M.1
Herendeen, P.S.2
Wojciechowski, M.F.3
-
20
-
-
0141519279
-
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
-
Li, L., Stoeckert, C.J. & Roos, D.S. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13, 2178-2189 (2003).
-
(2003)
Genome Res
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, C.J.2
Roos, D.S.3
-
21
-
-
56149088569
-
Genome structure of the legume, Lotus japonicus
-
Sato, S. et al. Genome structure of the legume, Lotus japonicus. DNA Res. 15, 227-239 (2008).
-
(2008)
DNA Res
, vol.15
, pp. 227-239
-
-
Sato, S.1
-
22
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
The Arabidopsis genome initiative
-
The Arabidopsis genome initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408, 796-815 (2000).
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
23
-
-
41249098849
-
A high quality draft consensus sequence of the genome of a heterozygous grapevine variety
-
Velasco, R. et al. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS ONE 2, e1326 (2007).
-
(2007)
PLoS ONE
, vol.2
-
-
Velasco, R.1
-
24
-
-
0032205838
-
Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the RPP8 locus of Arabidopsis
-
McDowell, J.M. et al. Intragenic recombination and diversifying selection contribute to the evolution of downy mildew resistance at the RPP8 locus of Arabidopsis. Plant Cell 10, 1861-1874 (1998).
-
(1998)
Plant Cell
, vol.10
, pp. 1861-1874
-
-
McDowell, J.M.1
-
25
-
-
70349669118
-
MATE transporters facilitate vacuolar uptake of epicatechin 3′-O-glucoside for proanthocyanidin biosynthesis in Medicago truncatula and Arabidopsis
-
Zhao, J. & Dixon, R.A. MATE transporters facilitate vacuolar uptake of epicatechin 3′-O-glucoside for proanthocyanidin biosynthesis in Medicago truncatula and Arabidopsis. Plant Cell 21, 2323-2340 (2009).
-
(2009)
Plant Cell
, vol.21
, pp. 2323-2340
-
-
Zhao, J.1
Dixon, R.A.2
-
26
-
-
77955467894
-
A consensus genetic map of chickpea (Cicer atietinum L.) based on 10 mapping populations
-
Millan, T. et al. A consensus genetic map of chickpea (Cicer atietinum L.) based on 10 mapping populations. Euphytica 175, 175-189 (2010).
-
(2010)
Euphytica
, vol.175
, pp. 175-189
-
-
Millan, T.1
-
27
-
-
0034118493
-
Inference of population structure using multilocus genotype data
-
Pritchard, J.K., Stephens, P. & Donnelly, P. Inference of population structure using multilocus genotype data. Genetics 155, 945-959 (2000).
-
(2000)
Genetics
, vol.155
, pp. 945-959
-
-
Pritchard, J.K.1
Stephens, P.2
Donnelly, P.3
-
28
-
-
0030467524
-
Evaluating loci for use in the genetic analysis of population structure
-
Beaumont, M.A. & Nichols, R.A. Evaluating loci for use in the genetic analysis of population structure. Proc. R. Soc. Lond. B 263, 1619-1626 (1996).
-
(1996)
Proc. R. Soc. Lond. B
, vol.263
, pp. 1619-1626
-
-
Beaumont, M.A.1
Nichols, R.A.2
-
29
-
-
74049108922
-
BLAST+: Architecture and applications
-
Camacho, C. et al. BLAST+: architecture and applications. BMC Bioinformatics 10, 421 (2009).
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 421
-
-
Camacho, C.1
-
30
-
-
0030920610
-
Sequence mapping by electronic PCR
-
Schuler, G.D. Sequence mapping by electronic PCR. Genome Res. 7, 541-550 (1997).
-
(1997)
Genome Res
, vol.7
, pp. 541-550
-
-
Schuler, G.D.1
-
31
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz, S. et al. Versatile and open software for comparing large genomes. Genome Biol. 5, R12 (2004).
-
(2004)
Genome Biol
, vol.5
-
-
Kurtz, S.1
-
32
-
-
0036226603
-
BLAT-The BLAST-like alignment tool
-
Kent, W.J. BLAT-the BLAST-like alignment tool. Genome Res. 12, 656-664 (2002).
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
33
-
-
0033555906
-
Tandem repeats finder: A program to analyze DNA sequences
-
Benson, G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27, 573-580 (1999).
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 573-580
-
-
Benson, G.1
-
34
-
-
34547592867
-
LTR FINDER: An efficient tool for the prediction of full-length LTR retrotransposons
-
Xu, Z. & Wang, H. LTR FINDER: an efficient tool for the prediction of full-length LTR retrotransposons. Nucleic Acids Res. 35, W265-W268 (2007).
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Xu, Z.1
Wang, H.2
-
35
-
-
84860513986
-
PILER: Identification and classification of genomic repeats
-
Edgar, R.C. & Myers, E.W. PILER: identification and classification of genomic repeats. Bioinformatics 21, i152-i158 (2005).
-
(2005)
Bioinformatics
, vol.21
-
-
Edgar, R.C.1
Myers, E.W.2
-
36
-
-
29144455282
-
De novo identification of repeat families in large genomes
-
Price, A.L., Jones, N.C. & Pevzner, P.A. De novo identification of repeat families in large genomes. Bioinformatics 21, i351-i358 (2005).
-
(2005)
Bioinformatics
, vol.21
-
-
Price, A.L.1
Jones, N.C.2
Pevzner, P.A.3
-
37
-
-
63049126614
-
Using RepeatMasker to identify repetitive elements in genomic sequences
-
Tarailo-Graovac, M. & Chen, N. Using RepeatMasker to identify repetitive elements in genomic sequences. Curr. Prot. Bioinform. 25, 4.10.1-4.10.14 (2009).
-
(2009)
Curr. Prot. Bioinform
, vol.25
, pp. 1-14
-
-
Tarailo-Graovac, M.1
Chen, N.2
-
38
-
-
23844525077
-
Repbase update, a database of eukaryotic repetitive elements
-
Jurka, J. et al. Repbase update, a database of eukaryotic repetitive elements. Cytogenet. Genome Res. 110, 462-467 (2005).
-
(2005)
Cytogenet. Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
-
39
-
-
34147180390
-
Creating a honey bee consensus gene set
-
Elsik, C.G. et al. Creating a honey bee consensus gene set. Genome Biol. 8, R13 (2007).
-
(2007)
Genome Biol
, vol.8
-
-
Elsik, C.G.1
-
40
-
-
0030854739
-
TRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
-
Lowe, T.M. & Eddy, S.R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25, 955-964 (1997).
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
41
-
-
65549111754
-
Infernal 1.0: Inference of RNA alignments
-
Nawrocki, E.P., Kolbe, D.L. & Eddy, S.R. Infernal 1.0: inference of RNA alignments. Bioinformatics 25, 1335-1337 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1335-1337
-
-
Nawrocki, E.P.1
Kolbe, D.L.2
Eddy, S.R.3
-
42
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck, J.P. & Ronquist, F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754-755 (2001).
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
43
-
-
40749095606
-
Identification and characterization of nucleotide-binding site-leucine-rich repeat genes in the model plant Medicago truncatula
-
Ameline-Torregrosa, C. et al. Identification and characterization of nucleotide-binding site-leucine-rich repeat genes in the model plant Medicago truncatula. Plant Physiol. 146, 5-21 (2008).
-
(2008)
Plant Physiol
, vol.146
, pp. 5-21
-
-
Ameline-Torregrosa, C.1
-
44
-
-
40949127893
-
Genome-wide identification of NBS resistance genes in Populus trichocarpa
-
Kohler, A. et al. Genome-wide identification of NBS resistance genes in Populus trichocarpa. Plant Mol. Biol. 66, 619-636 (2008).
-
(2008)
Plant Mol. Biol
, vol.66
, pp. 619-636
-
-
Kohler, A.1
-
45
-
-
85048576069
-
-
Miller, M.A., Pfeiffer, W. & Schwartz, T. Creating the CIPRES Science Gateway for inference of large phylogenetic trees (Gateway Computing Environments Workshop, 14 November 2010; IEEEXplore, 2010).
-
Miller, M.A., Pfeiffer, W. & Schwartz, T. Creating the CIPRES Science Gateway for inference of large phylogenetic trees (Gateway Computing Environments Workshop, 14 November 2010; IEEEXplore, 2010).
-
-
-
-
46
-
-
77955019084
-
Parallelization of the MAFFT multiple sequence alignment program
-
Katoh, K. & Toh, H. Parallelization of the MAFFT multiple sequence alignment program. Bioinformatics 26, 1899-1900 (2010).
-
(2010)
Bioinformatics
, vol.26
, pp. 1899-1900
-
-
Katoh, K.1
Toh, H.2
-
47
-
-
33750403801
-
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis, A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
48
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura, K. et al. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739 (2011).
-
(2011)
Mol. Biol. Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
-
49
-
-
33748260755
-
SyMAP: A system for discovering and viewing syntenic regions of FPC maps
-
Soderlund, C., Nelson, W., Shoemaker, A. & Paterson, A. SyMAP: A system for discovering and viewing syntenic regions of FPC maps. Genome Res. 16, 1159-1168 (2006).
-
(2006)
Genome Res
, vol.16
, pp. 1159-1168
-
-
Soderlund, C.1
Nelson, W.2
Shoemaker, A.3
Paterson, A.4
-
50
-
-
79961194036
-
SyMAP v3.4: A turnkey synteny system with application to plant genomes
-
Soderlund, C., Bomhoff, M. & Nelson, W. SyMAP v3.4: a turnkey synteny system with application to plant genomes. Nucleic Acids Res. 39, e68 (2011).
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Soderlund, C.1
Bomhoff, M.2
Nelson, W.3
-
51
-
-
0037854629
-
Exploiting EST databases for the development and characterization of gene derived SSR-markers in barley (Hordeum vulgare L.)
-
Thiel, T., Michalek, W., Varshney, R.K. & Graner, A. Exploiting EST databases for the development and characterization of gene derived SSR-markers in barley (Hordeum vulgare L.). Theor. Appl. Genet. 106, 411-422 (2003).
-
(2003)
Theor. Appl. Genet
, vol.106
, pp. 411-422
-
-
Thiel, T.1
Michalek, W.2
Varshney, R.K.3
Graner, A.4
-
52
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li, H. et al. The sequence alignment/map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
53
-
-
54449098752
-
Rapid SNP discovery and genetic mapping using sequenced RAD markers
-
Baird, N.A. et al. Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS ONE 3, e3376 (2008).
-
(2008)
PLoS ONE
, vol.3
-
-
Baird, N.A.1
-
54
-
-
84862936211
-
Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
-
Xu, X. et al. Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes. Nat. Biotechnol. 30, 1005-1011 (2012).
-
(2012)
Nat. Biotechnol
, vol.30
, pp. 1005-1011
-
-
Xu, X.1
-
55
-
-
70350134644
-
Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx)
-
Xia, Q. et al. Complete resequencing of 40 genomes reveals domestication events and genes in silkworm (Bombyx). Science 326, 433-436 (2009).
-
(2009)
Science
, vol.326
, pp. 433-436
-
-
Xia, Q.1
|