-
1
-
-
77958471357
-
Differential expression analysis for sequence count data
-
10.1186/gb-2010-11-10-r106 20979621 10.1186/gb-2010-11-10-r106 1:CAS:528:DC%2BC3cXhsVahs7bI
-
Anders S, Huber W (2010) Differential expression analysis for sequence count data. Genome Biol 11:R106. doi: 10.1186/gb-2010-11-10-r106
-
(2010)
Genome Biol
, vol.11
, pp. 106
-
-
Anders, S.1
Huber, W.2
-
3
-
-
77954376945
-
GOing Bayesian: Model-based gene set analysis of genome-scale data
-
10.1093/nar/gkq045 20172960 10.1093/nar/gkq045 1:CAS:528: DC%2BC3cXnvVOitLY%3D
-
Bauer S, Gagneur J, Robinson PN (2010) GOing Bayesian: model-based gene set analysis of genome-scale data. Nucleic Acids Res 38:3523-3532. doi: 10.1093/nar/gkq045
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 3523-3532
-
-
Bauer, S.1
Gagneur, J.2
Robinson, P.N.3
-
4
-
-
0028014382
-
The Golgi guanosine diphosphatase is required for transport of GDP-mannose into the lumen of Saccharomyces cerevisiae Golgi vesicles
-
7506254 1:CAS:528:DyaK2cXntlSkuw%3D%3D
-
Berninsone P, Miret JJ, Hirschberg CB (1994) The Golgi guanosine diphosphatase is required for transport of GDP-mannose into the lumen of Saccharomyces cerevisiae Golgi vesicles. J Biol Chem 269:207-211
-
(1994)
J Biol Chem
, vol.269
, pp. 207-211
-
-
Berninsone, P.1
Miret, J.J.2
Hirschberg, C.B.3
-
5
-
-
70449129500
-
Recent patents on the Pichia pastoris expression system: Expanding the toolbox for recombinant protein production
-
10.2174/187220809789389126 19747151 10.2174/187220809789389126 1:CAS:528:DC%2BD1MXhsFWhtLfM
-
Bollok M, Resina D, Valero F, Ferrer P (2009) Recent patents on the Pichia pastoris expression system: expanding the toolbox for recombinant protein production. Recent Pat Biotechnol 3:192-201. doi: 10.2174/187220809789389126
-
(2009)
Recent Pat Biotechnol
, vol.3
, pp. 192-201
-
-
Bollok, M.1
Resina, D.2
Valero, F.3
Ferrer, P.4
-
6
-
-
79959481888
-
Protein folding and modification in the mammalian endoplasmic reticulum
-
10.1146/annurev-biochem-062209-093836 21495850 10.1146/annurev-biochem- 062209-093836 1:CAS:528:DC%2BC3MXptVCns78%3D
-
Braakman I, Bulleid NJ (2011) Protein folding and modification in the mammalian endoplasmic reticulum. Annu Rev Biochem 80:71-99. doi: 10.1146/annurev-biochem-062209-093836
-
(2011)
Annu Rev Biochem
, vol.80
, pp. 71-99
-
-
Braakman, I.1
Bulleid, N.J.2
-
8
-
-
84864366831
-
Genome-wide expression analysis upon constitutive activation of the HacA bZIP transcription factor in Aspergillus niger reveals a coordinated cellular response to counteract ER stress
-
10.1186/1471-2164-13-350 22846479 10.1186/1471-2164-13-350 1:CAS:528:DC%2BC38Xhslaju7%2FL
-
Carvalho ND, Jørgensen TR, Arentshorst M, Nitsche BM, van den Hondel CA, Archer DB, Ram AF (2012) Genome-wide expression analysis upon constitutive activation of the HacA bZIP transcription factor in Aspergillus niger reveals a coordinated cellular response to counteract ER stress. BMC Genomics 13:350. doi: 10.1186/1471-2164-13-350
-
(2012)
BMC Genomics
, vol.13
, pp. 350
-
-
Carvalho, N.D.1
Jørgensen, T.R.2
Arentshorst, M.3
Nitsche, B.M.4
Van Den Hondel, C.A.5
Archer, D.B.6
Ram, A.F.7
-
9
-
-
84859199206
-
Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials
-
10.1186/1752-0509-6-24 22472172 10.1186/1752-0509-6-24 1:CAS:528:DC%2BC38Xpt1ais74%3D
-
Caspeta L, Shoaie S, Agren R, Nookaew I, Nielsen J (2012) Genome-scale metabolic reconstructions of Pichia stipitis and Pichia pastoris and in silico evaluation of their potentials. BMC Syst Biol 6:24. doi: 10.1186/1752-0509-6-24
-
(2012)
BMC Syst Biol
, vol.6
, pp. 24
-
-
Caspeta, L.1
Shoaie, S.2
Agren, R.3
Nookaew, I.4
Nielsen, J.5
-
10
-
-
34247630099
-
Growth control of the eukaryote cell: A systems biology study in yeast
-
10.1186/jbiol54 17439666 10.1186/jbiol54
-
Castrillo JI, Zeef LA, Hoyle DC, Zhang N, Hayes A, Gardner DC, Cornell MJ, Petty J, Hakes L, Wardleworth L, Rash B, Brown M, Dunn WB, Broadhurst D, O'Donoghue K, Hester SS, Dunkley TP, Hart SR, Swainston N, Li P, Gaskell SJ, Paton NW, Lilley KS, Kell DB, Oliver SG (2007) Growth control of the eukaryote cell: a systems biology study in yeast. J Biol 6:4. doi: 10.1186/jbiol54
-
(2007)
J Biol
, vol.6
, pp. 4
-
-
Castrillo, J.I.1
Zeef, L.A.2
Hoyle, D.C.3
Zhang, N.4
Hayes, A.5
Gardner, D.C.6
Cornell, M.J.7
Petty, J.8
Hakes, L.9
Wardleworth, L.10
Rash, B.11
Brown, M.12
Dunn, W.B.13
Broadhurst, D.14
O'Donoghue, K.15
Hester, S.S.16
Dunkley, T.P.17
Hart, S.R.18
Swainston, N.19
Li, P.20
Gaskell, S.J.21
Paton, N.W.22
Lilley, K.S.23
Kell, D.B.24
Oliver, S.G.25
more..
-
11
-
-
70349897510
-
Fed-batch methanol feeding strategy for recombinant protein production by Pichia pastoris in the presence of co-substrate sorbitol
-
10.1002/yea.1679 19575480 10.1002/yea.1679 1:CAS:528:DC%2BD1MXhtVKiu7fE
-
Celik E, Calik P, Oliver SG (2009) Fed-batch methanol feeding strategy for recombinant protein production by Pichia pastoris in the presence of co-substrate sorbitol. Yeast 26:473-484. doi: 10.1002/yea.1679
-
(2009)
Yeast
, vol.26
, pp. 473-484
-
-
Celik, E.1
Calik, P.2
Oliver, S.G.3
-
12
-
-
77954291914
-
BioMet Toolbox: Genome-wide analysis of metabolism
-
WEB SERVER ISSUE 10.1093/nar/gkq404 20483918 10.1093/nar/gkq404 1:CAS:528:DC%2BC3cXotVSqtLw%3D
-
Cvijovic M et al (2010) BioMet Toolbox: genome-wide analysis of metabolism. Nucleic Acids Res 38(Web Server issue):W144-W149. doi: 10.1093/nar/gkq404
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Cvijovic, M.1
-
13
-
-
84888437228
-
-
Proc 20th Conv of the Inst of Brew (Australia and New Zealand section) Brisbane
-
Davies AW (1988) Continuous fermentation - 30 years on. Proc 20th Conv of the Inst of Brew (Australia and New Zealand section), Brisbane, pp 165-168
-
(1988)
Continuous Fermentation - 30 Years on
, pp. 165-168
-
-
Davies, A.W.1
-
14
-
-
67149116767
-
Genome sequence of the recombinant protein production host Pichia pastoris
-
10.1038/nbt.1544 19465926 10.1038/nbt.1544
-
De Schutter K, Lin YC, Tiels P, Van Hecke A, Glinka S, Weber-Lehmann J, Rouzé P, Van de Peer Y, Callewaert N (2009) Genome sequence of the recombinant protein production host Pichia pastoris. Nat Biotechnol 27:561-566. doi: 10.1038/nbt.1544
-
(2009)
Nat Biotechnol
, vol.27
, pp. 561-566
-
-
De Schutter, K.1
Lin, Y.C.2
Tiels, P.3
Van Hecke, A.4
Glinka, S.5
Weber-Lehmann, J.6
Rouzé, P.7
Van De Peer, Y.8
Callewaert, N.9
-
15
-
-
84865401111
-
Methanol/sorbitol co-feeding induction enhanced porcine interferon-α production by P. pastoris associated with energy metabolism shift
-
10.1007/s00449-012-0697-1 22349926 10.1007/s00449-012-0697-1 1:CAS:528:DC%2BC38XhtFOnu7nK
-
Gao MJ, Li Z, Yu RS, Wu JR, Zheng ZY, Shi ZP, Zhan XB, Lin CC (2012) Methanol/sorbitol co-feeding induction enhanced porcine interferon-α production by P. pastoris associated with energy metabolism shift. Bioprocess Biosyst Eng 35:1125-1136. doi: 10.1007/s00449-012-0697-1
-
(2012)
Bioprocess Biosyst Eng
, vol.35
, pp. 1125-1136
-
-
Gao, M.J.1
Li, Z.2
Yu, R.S.3
Wu, J.R.4
Zheng, Z.Y.5
Shi, Z.P.6
Zhan, X.B.7
Lin, C.C.8
-
16
-
-
42549105668
-
Protein folding and conformational stress in microbial cells producing recombinant proteins: A host comparative overview
-
10.1186/1475-2859-7-11 18394160 10.1186/1475-2859-7-11
-
Gasser B, Saloheimo M, Rinas U, Dragosits M, Rodríguez-Carmona E, Baumann K, Giuliani M, Parrilli E, Branduardi P, Lang C, Porro D, Ferrer P, Tutino ML, Mattanovich D, Villaverde A (2008) Protein folding and conformational stress in microbial cells producing recombinant proteins: a host comparative overview. Microb Cell Fact 7:11. doi: 10.1186/1475-2859-7-11
-
(2008)
Microb Cell Fact
, vol.7
, pp. 11
-
-
Gasser, B.1
Saloheimo, M.2
Rinas, U.3
Dragosits, M.4
Rodríguez-Carmona, E.5
Baumann, K.6
Giuliani, M.7
Parrilli, E.8
Branduardi, P.9
Lang, C.10
Porro, D.11
Ferrer, P.12
Tutino, M.L.13
Mattanovich, D.14
Villaverde, A.15
-
17
-
-
34447537990
-
Monitoring of transcriptional regulation in Pichia pastoris under protein production conditions
-
10.1186/1471-2164-8-179 10.1186/1471-2164-8-179
-
Gasser B, Maurer M, Rautio J, Sauer M, Bhattacharyya A, Saloheimo M, Penttilä M, Mattanovich D (2012) Monitoring of transcriptional regulation in Pichia pastoris under protein production conditions. BMC Genomics 8:179. doi: 10.1186/1471-2164-8-179
-
(2012)
BMC Genomics
, vol.8
, pp. 179
-
-
Gasser, B.1
Maurer, M.2
Rautio, J.3
Sauer, M.4
Bhattacharyya, A.5
Saloheimo, M.6
Penttilä, M.7
Mattanovich, D.8
-
19
-
-
77954040576
-
The HAC1 gene from Pichia pastoris: Characterization and effect of its overexpression on the production of secreted, surface displayed and membrane proteins
-
10.1186/1475-2859-9-49 20591165 10.1186/1475-2859-9-49
-
Guerfal M, Ryckaert S, Jacobs PP, Ameloot P, Van Craenenbroeck K, Derycke R, Callewaert N (2010) The HAC1 gene from Pichia pastoris: characterization and effect of its overexpression on the production of secreted, surface displayed and membrane proteins. Microb Cell Fact 9:49. doi: 10.1186/1475-2859-9-49
-
(2010)
Microb Cell Fact
, vol.9
, pp. 49
-
-
Guerfal, M.1
Ryckaert, S.2
Jacobs, P.P.3
Ameloot, P.4
Van Craenenbroeck, K.5
Derycke, R.6
Callewaert, N.7
-
20
-
-
77953684935
-
Nutrient control of eukaryote cell growth: A systems biology study in yeast
-
10.1186/1741-7007-8-68 20497545 10.1186/1741-7007-8-68
-
Gutteridge A, Pir P, Castrillo JI, Charles PD, Lilley KS, Oliver SG (2010) Nutrient control of eukaryote cell growth: a systems biology study in yeast. BMC Biol 8:68. doi: 10.1186/1741-7007-8-68
-
(2010)
BMC Biol
, vol.8
, pp. 68
-
-
Gutteridge, A.1
Pir, P.2
Castrillo, J.I.3
Charles, P.D.4
Lilley, K.S.5
Oliver, S.G.6
-
21
-
-
80052598704
-
Biochemical and biophysical characterization of humanized IgG1 produced in Pichia pastoris
-
doi: 10.4161/mabs.3.5.16891
-
Ha S, Wang Y, Rustandi RR (2011) Biochemical and biophysical characterization of humanized IgG1 produced in Pichia pastoris. MAbs 3453-460. doi: 10.4161/mabs.3.5.16891
-
(2011)
MAbs
, pp. 3453-3460
-
-
Ha, S.1
Wang, Y.2
Rustandi, R.R.3
-
22
-
-
4344619933
-
DER7, encoding alpha-glucosidase i is essential for degradation of malfolded glycoproteins of the endoplasmic reticulum
-
10.1016/j.femsyr.2004.04.002 15450188 10.1016/j.femsyr.2004.04.002 1:CAS:528:DC%2BD2cXmvFCls78%3D
-
Hitt R, Wolf DH (2004) DER7, encoding alpha-glucosidase I is essential for degradation of malfolded glycoproteins of the endoplasmic reticulum. FEMS Yeast Res 4:815-820. doi: 10.1016/j.femsyr.2004.04.002
-
(2004)
FEMS Yeast Res
, vol.4
, pp. 815-820
-
-
Hitt, R.1
Wolf, D.H.2
-
23
-
-
0442309687
-
Effects of gene dosage, promoters, and substrates on unfolded protein stress of recombinant Pichia pastoris
-
10.1002/bit.10904 14755554 10.1002/bit.10904 1:CAS:528: DC%2BD2cXhsFKmtbw%3D
-
Hohenblum H, Gasser B, Maurer M, Borth N, Mattanovich D (2004) Effects of gene dosage, promoters, and substrates on unfolded protein stress of recombinant Pichia pastoris. Biotechnol Bioeng 85:367-375. doi: 10.1002/bit.10904
-
(2004)
Biotechnol Bioeng
, vol.85
, pp. 367-375
-
-
Hohenblum, H.1
Gasser, B.2
Maurer, M.3
Borth, N.4
Mattanovich, D.5
-
24
-
-
68449104172
-
Developing a scalable model of recombinant protein yield from Pichia pastoris: The influence of culture conditions, biomass and induction regime
-
10.1186/1475-2859-8-35 19570229 10.1186/1475-2859-8-35
-
Holmes WJ, Darby RA, Wilks MD, Smith R, Bill RM (2009) Developing a scalable model of recombinant protein yield from Pichia pastoris: the influence of culture conditions, biomass and induction regime. Microb Cell Fact 8:35. doi: 10.1186/1475-2859-8-35
-
(2009)
Microb Cell Fact
, vol.8
, pp. 35
-
-
Holmes, W.J.1
Darby, R.A.2
Wilks, M.D.3
Smith, R.4
Bill, R.M.5
-
25
-
-
79955924834
-
Optimization of production of the anti-keratin 8 single-chain Fv TS1-218 in Pichia pastoris using design of experiments
-
10.1186/1475-2859-10-34 21575236 10.1186/1475-2859-10-34
-
Jafari R, Sundström BE, Holm P (2011) Optimization of production of the anti-keratin 8 single-chain Fv TS1-218 in Pichia pastoris using design of experiments. Microb Cell Fact 10:34. doi: 10.1186/1475-2859-10-34
-
(2011)
Microb Cell Fact
, vol.10
, pp. 34
-
-
Jafari, R.1
Sundström, B.E.2
Holm, P.3
-
26
-
-
24344480244
-
Rationalising lysozyme amyloidosis: Insights from the structure and solution dynamics of T70N lysozyme
-
10.1016/j.jmb.2005.07.040 16126226 10.1016/j.jmb.2005.07.040 1:CAS:528:DC%2BD2MXhtVWit7jE
-
Johnson RJ et al (2005) Rationalising lysozyme amyloidosis: insights from the structure and solution dynamics of T70N lysozyme. J Mol Biol 352(4):823-836. doi: 10.1016/j.jmb.2005.07.040
-
(2005)
J Mol Biol
, vol.352
, Issue.4
, pp. 823-836
-
-
Johnson, R.J.1
-
27
-
-
34250354690
-
Regulation of alcohol oxidase of a recombinant Pichia pastoris Mut+ strain in transient continuous cultures
-
10.1016/j.jbiotec.2007.04.004 17566583 10.1016/j.jbiotec.2007.04.004 1:CAS:528:DC%2BD2sXmvVKmtLs%3D
-
Jungo C, Marison I, von Stockar U (2007a) Regulation of alcohol oxidase of a recombinant Pichia pastoris Mut+ strain in transient continuous cultures. J Biotechnol 130:236-246. doi: 10.1016/j.jbiotec.2007.04.004
-
(2007)
J Biotechnol
, vol.130
, pp. 236-246
-
-
Jungo, C.1
Marison, I.2
Von Stockar, U.3
-
28
-
-
34447292394
-
A quantitative analysis of the benefits of mixed feeds of sorbitol and methanol for the production of recombinant avidin with Pichia pastoris
-
10.1016/j.jbiotec.2007.05.019 17614154 10.1016/j.jbiotec.2007.05.019 1:CAS:528:DC%2BD2sXns1ylu70%3D
-
Jungo C, Schenk J, Pasquier M, Marison IW, von Stockar U (2007b) A quantitative analysis of the benefits of mixed feeds of sorbitol and methanol for the production of recombinant avidin with Pichia pastoris. J Biotechnol 131:57-66. doi: 10.1016/j.jbiotec.2007.05.019
-
(2007)
J Biotechnol
, vol.131
, pp. 57-66
-
-
Jungo, C.1
Schenk, J.2
Pasquier, M.3
Marison, I.W.4
Von Stockar, U.5
-
29
-
-
77953706478
-
The cell wall and endoplasmic reticulum stress responses are coordinately regulated in Saccharomyces cerevisiae
-
10.4161/cib.2.3.8097 19641740 10.4161/cib.2.3.8097 1:CAS:528: DC%2BD1MXht1yru7fI
-
Krysan DJ (2009) The cell wall and endoplasmic reticulum stress responses are coordinately regulated in Saccharomyces cerevisiae. Commun Integr Biol 2:233-235. doi: 10.4161/cib.2.3.8097
-
(2009)
Commun Integr Biol
, vol.2
, pp. 233-235
-
-
Krysan, D.J.1
-
30
-
-
33644939444
-
Impact of the native-state stability of human lysozyme variants on protein secretion by Pichia pastoris
-
10.1111/j.1742-4658.2005.05099.x 16441658 10.1111/j.1742-4658.2005.05099. x 1:CAS:528:DC%2BD28XitlGlu7s%3D
-
Kumita JR, Johnson RJ, Alcocer MJ, Dumoulin M, Holmqvist F, McCammon MG, Robinson CV, Archer DB, Dobson CM (2006) Impact of the native-state stability of human lysozyme variants on protein secretion by Pichia pastoris. FEBS J 273:711-720. doi: 10.1111/j.1742-4658.2005.05099.x
-
(2006)
FEBS J
, vol.273
, pp. 711-720
-
-
Kumita, J.R.1
Johnson, R.J.2
Alcocer, M.J.3
Dumoulin, M.4
Holmqvist, F.5
McCammon, M.G.6
Robinson, C.V.7
Archer, D.B.8
Dobson, C.M.9
-
31
-
-
79961208871
-
Pharmacokinetics of IgG1 monoclonal antibodies produced in humanized Pichia pastoris with specific glycoforms: A comparative study with CHO produced materials
-
10.1016/j.biologicals.2011.06.002 21723741 10.1016/j.biologicals.2011.06. 002 1:CAS:528:DC%2BC3MXhtVaisbfM
-
Liu L, Stadheim A, Hamuro L, Pittman T, Wang W, Zha D, Hochman J, Prueksaritanont T (2011) Pharmacokinetics of IgG1 monoclonal antibodies produced in humanized Pichia pastoris with specific glycoforms: a comparative study with CHO produced materials. Biologicals 39:205-210. doi: 10.1016/j.biologicals. 2011.06.002
-
(2011)
Biologicals
, vol.39
, pp. 205-210
-
-
Liu, L.1
Stadheim, A.2
Hamuro, L.3
Pittman, T.4
Wang, W.5
Zha, D.6
Hochman, J.7
Prueksaritanont, T.8
-
33
-
-
77952583297
-
Protein quality control in the ER: The recognition of misfolded proteins
-
10.1016/j.semcdb.2010.03.006 20347046 10.1016/j.semcdb.2010.03.006
-
Määttänen P, Gehring K, Bergeron JJ, Thomas DY (2010) Protein quality control in the ER: the recognition of misfolded proteins. Semin Cell Dev Biol 21:500-511. doi: 10.1016/j.semcdb.2010.03.006
-
(2010)
Semin Cell Dev Biol
, vol.21
, pp. 500-511
-
-
Määttänen, P.1
Gehring, K.2
Bergeron, J.J.3
Thomas, D.Y.4
-
34
-
-
70350538686
-
Directed gene copy number amplification in Pichia pastoris by vector integration into the ribosomal DNA locus
-
10.1111/j.1567-1364.2009.00561.x 19799640 10.1111/j.1567-1364.2009.00561. x 1:CAS:528:DC%2BD1MXhsVChtLzP
-
Marx H, Mecklenbräuker A, Gasser B, Sauer M, Mattanovich D (2009) Directed gene copy number amplification in Pichia pastoris by vector integration into the ribosomal DNA locus. FEMS Yeast Res 9:1260-1270. doi: 10.1111/j.1567-1364.2009.00561.x
-
(2009)
FEMS Yeast Res
, vol.9
, pp. 1260-1270
-
-
Marx, H.1
Mecklenbräuker, A.2
Gasser, B.3
Sauer, M.4
Mattanovich, D.5
-
35
-
-
84855932983
-
Recombinant protein production in yeasts
-
10.1007/978-1-61779-433-9-17 22160907 10.1007/978-1-61779-433-9-17 1:CAS:528:DC%2BC38Xhtlehs7rM
-
Mattanovich D, Branduardi P, Dato L, Gasser B, Sauer M, Porro D (2012) Recombinant protein production in yeasts. Methods Mol Biol 824:329-358. doi: 10.1007/978-1-61779-433-9-17
-
(2012)
Methods Mol Biol
, vol.824
, pp. 329-358
-
-
Mattanovich, D.1
Branduardi, P.2
Dato, L.3
Gasser, B.4
Sauer, M.5
Porro, D.6
-
36
-
-
84855939269
-
Yeasts as a tool for heterologous gene expression
-
10.1007/978-1-61779-433-9-18 22160908 10.1007/978-1-61779-433-9-18 1:CAS:528:DC%2BC38Xhtlehs7rN
-
Mokdad-Gargouri R, Abdelmoula-Soussi S, Hadiji-Abbès N, Amor IY, Borchani-Chabchoub I, Gargouri A (2012) Yeasts as a tool for heterologous gene expression. Methods Mol Biol 824:359-370. doi: 10.1007/978-1-61779-433-9-18
-
(2012)
Methods Mol Biol
, vol.824
, pp. 359-370
-
-
Mokdad-Gargouri, R.1
Abdelmoula-Soussi, S.2
Hadiji-Abbès, N.3
Amor, I.Y.4
Borchani-Chabchoub, I.5
Gargouri, A.6
-
37
-
-
14544268137
-
Uncovering transcriptional regulation of metabolism by using metabolic network topology
-
10.1073/pnas.0406811102 15710883 10.1073/pnas.0406811102 1:CAS:528:DC%2BD2MXitVSksro%3D
-
Patil KR, Nielsen J (2005) Uncovering transcriptional regulation of metabolism by using metabolic network topology. Proc Natl Acad Sci U S A 102:2685-2689. doi: 10.1073/pnas.0406811102
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 2685-2689
-
-
Patil, K.R.1
Nielsen, J.2
-
38
-
-
34247347868
-
Sorbitol co-feeding reduces metabolic burden caused by the overexpression of a Rhizopus oryzae lipase in Pichia pastoris
-
10.1016/j.jbiotec.2007.02.025 17399833 10.1016/j.jbiotec.2007.02.025
-
Ramón R, Ferrer P, Valero F (2007) Sorbitol co-feeding reduces metabolic burden caused by the overexpression of a Rhizopus oryzae lipase in Pichia pastoris. J Biotechnol 130:39-46. doi: 10.1016/j.jbiotec.2007.02.025
-
(2007)
J Biotechnol
, vol.130
, pp. 39-46
-
-
Ramón, R.1
Ferrer, P.2
Valero, F.3
-
39
-
-
70350547284
-
Engineering of bottlenecks in Rhizopus oryzae lipase production in Pichia pastoris using the nitrogen source-regulated FLD1 promoter
-
10.1016/j.nbt.2009.01.008 19552885 10.1016/j.nbt.2009.01.008 1:CAS:528:DC%2BD1MXhtFajsLnJ
-
Resina D, Maurer M, Cos O, Arnau C, Carnicer M, Marx H, Gasser B, Valero F, Mattanovich D, Ferrer P (2009) Engineering of bottlenecks in Rhizopus oryzae lipase production in Pichia pastoris using the nitrogen source-regulated FLD1 promoter. N Biotechnol 25:396-403. doi: 10.1016/j.nbt.2009.01.008
-
(2009)
N Biotechnol
, vol.25
, pp. 396-403
-
-
Resina, D.1
Maurer, M.2
Cos, O.3
Arnau, C.4
Carnicer, M.5
Marx, H.6
Gasser, B.7
Valero, F.8
Mattanovich, D.9
Ferrer, P.10
-
40
-
-
0033490112
-
Surfing the Sec61 channel: Bidirectional protein translocation across the ER membrane
-
10564637
-
Römisch K (1999) Surfing the Sec61 channel: bidirectional protein translocation across the ER membrane. J Cell Sci 112:4185-4191
-
(1999)
J Cell Sci
, vol.112
, pp. 4185-4191
-
-
Römisch, K.1
-
42
-
-
38449106761
-
Influence of specific growth rate on specific productivity and glycosylation of a recombinant avidin produced by a Pichia pastoris Mut+ strain
-
10.1002/bit.21565 17636485 10.1002/bit.21565 1:CAS:528: DC%2BD1cXnsVKlug%3D%3D
-
Schenk J, Balazs K, Jungo C, Urfer J, Wegmann C, Zocchi A, Marison IW, von Stockar U (2008) Influence of specific growth rate on specific productivity and glycosylation of a recombinant avidin produced by a Pichia pastoris Mut+ strain. Biotechnol Bioeng 99:368-377. doi: 10.1002/bit.21565
-
(2008)
Biotechnol Bioeng
, vol.99
, pp. 368-377
-
-
Schenk, J.1
Balazs, K.2
Jungo, C.3
Urfer, J.4
Wegmann, C.5
Zocchi, A.6
Marison, I.W.7
Von Stockar, U.8
-
43
-
-
84863205849
-
NIH Image to ImageJ: 25 years of image analysis
-
10.1038/nmeth.2089 22930834 10.1038/nmeth.2089 1:CAS:528: DC%2BC38XhtVKntb7P
-
Schneider CA, Rasband WS, Eliceiri KW (2012) NIH Image to ImageJ: 25 years of image analysis. Nat Methods 9:671-675. doi: 10.1038/nmeth.2089
-
(2012)
Nat Methods
, vol.9
, pp. 671-675
-
-
Schneider, C.A.1
Rasband, W.S.2
Eliceiri, K.W.3
-
44
-
-
73349106233
-
Membrane expansion alleviates endoplasmic reticulum stress independently of the unfolded protein response
-
10.1083/jcb.200907074 19948500 10.1083/jcb.200907074 1:CAS:528: DC%2BD1MXhsVKisb3K
-
Schuck S, Prinz WA, Thorn KS, Voss C, Walter P (2009) Membrane expansion alleviates endoplasmic reticulum stress independently of the unfolded protein response. J Cell Biol 187:525-536. doi: 10.1083/jcb.200907074
-
(2009)
J Cell Biol
, vol.187
, pp. 525-536
-
-
Schuck, S.1
Prinz, W.A.2
Thorn, K.S.3
Voss, C.4
Walter, P.5
-
45
-
-
27944459619
-
Yeast oligosaccharyltransferase consists of two functionally distinct sub-complexes, specified by either the Ost3p or Ost6p subunit
-
10.1016/j.febslet.2005.10.063 16297388 10.1016/j.febslet.2005.10.063 1:CAS:528:DC%2BD2MXht1OlurvE
-
Schwarz M, Knauer R, Lehle L (2005) Yeast oligosaccharyltransferase consists of two functionally distinct sub-complexes, specified by either the Ost3p or Ost6p subunit. FEBS Lett 579:6564-6568. doi: 10.1016/j.febslet.2005.10. 063
-
(2005)
FEBS Lett
, vol.579
, pp. 6564-6568
-
-
Schwarz, M.1
Knauer, R.2
Lehle, L.3
-
46
-
-
34249847958
-
PcaMethods - A bioconductor package providing PCA methods for incomplete data
-
10.1093/bioinformatics/btm069 17344241 10.1093/bioinformatics/btm069 1:CAS:528:DC%2BD2sXmtVKqu7g%3D
-
Stacklies W, Redestig H, Scholz M, Walther D, Selbig J (2007) pcaMethods - a bioconductor package providing PCA methods for incomplete data. Bioinformatics 23:1164-1167. doi: 10.1093/bioinformatics/btm069
-
(2007)
Bioinformatics
, vol.23
, pp. 1164-1167
-
-
Stacklies, W.1
Redestig, H.2
Scholz, M.3
Walther, D.4
Selbig, J.5
-
47
-
-
84869065441
-
ORCAE: Online resource for community annotation of eukaryotes
-
doi: 10.1038/nmeth.2242. Online Resource: Pichia pastoris
-
Sterck L, Billiau K, Abeel T, Rouzé P, Van de Peer, Y (2012) ORCAE: online resource for community annotation of eukaryotes. Nat Methods 9: 1041. doi: 10.1038/nmeth.2242. Online Resource: Pichia pastoris: http://bioinformatics.psb.ugent.be/orcae/overview/Picpa and https:// bioinformatics.psb.ugent.be/gdb/pichia/
-
(2012)
Nat Methods
, vol.9
, pp. 1041
-
-
Sterck L, B.1
-
48
-
-
79952195038
-
Use of yeast as a system to study amyloid toxicity
-
10.1016/j.ymeth.2010.11.007 21115125 10.1016/j.ymeth.2010.11.007 1:CAS:528:DC%2BC3MXjsFGisLk%3D
-
Summers DW, Cyr DM (2011) Use of yeast as a system to study amyloid toxicity. Methods 53:226-231. doi: 10.1016/j.ymeth.2010.11.007
-
(2011)
Methods
, vol.53
, pp. 226-231
-
-
Summers, D.W.1
Cyr, D.M.2
-
49
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
10.1093/bioinformatics/btp120 19289445 10.1093/bioinformatics/btp120 1:CAS:528:DC%2BD1MXltFWisrk%3D
-
Trapnell C, Pachter L, Salzberg SL (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25:1105-1111. doi: 10.1093/ bioinformatics/btp120
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
50
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
10.1038/nbt.1621 20436464 10.1038/nbt.1621 1:CAS:528:DC%2BC3cXlsVyitLY%3D
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L (2010) Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat Biotechnol 28:511-515. doi: 10.1038/nbt.1621
-
(2010)
Nat Biotechnol
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
51
-
-
0002008108
-
Myco-protein - A 20-year overnight success story
-
10.1016/S0953-7562(09)80989-1 10.1016/S0953-7562(09)80989-1 1:CAS:528:DyaK38XktVKiuro%3D
-
Trinci APJ (1992) Myco-protein - a 20-year overnight success story. Mycol Res 96:1-13. doi: 10.1016/S0953-7562(09)80989-1
-
(1992)
Mycol Res
, vol.96
, pp. 1-13
-
-
Trinci, A.P.J.1
-
52
-
-
84868525253
-
IRE1α cleaves select microRNAs during ER stress to derepress translation of proapoptotic Caspase-2
-
10.1126/science.1226191 23042294 10.1126/science.1226191 1:CAS:528:DC%2BC38Xhs1Wksr%2FF
-
Upton JP et al (2012) IRE1α cleaves select microRNAs during ER stress to derepress translation of proapoptotic Caspase-2. Science 338(6108):818-822. doi: 10.1126/science.1226191
-
(2012)
Science
, vol.338
, Issue.6108
, pp. 818-822
-
-
Upton, J.P.1
-
53
-
-
84864564106
-
Physiological response of Pichia pastoris GS115 to methanol-induced high level production of the hepatitis B surface antigen: Catabolic adaptation, stress responses, and autophagic processes
-
10.1186/1475-2859-11-103 22873405 10.1186/1475-2859-11-103 1:CAS:528:DC%2BC3sXhsFyit7s%3D
-
Vanz AL, Lünsdorf H, Adnan A, Nimtz M, Gurramkonda C, Khanna N, Rinas U (2012) Physiological response of Pichia pastoris GS115 to methanol-induced high level production of the hepatitis B surface antigen: catabolic adaptation, stress responses, and autophagic processes. Microb Cell Fact 11:103. doi: 10.1186/1475-2859-11-103
-
(2012)
Microb Cell Fact
, vol.11
, pp. 103
-
-
Vanz, A.L.1
Lünsdorf, H.2
Adnan, A.3
Nimtz, M.4
Gurramkonda, C.5
Khanna, N.6
Rinas, U.7
-
54
-
-
82255173966
-
The unfolded protein response: From stress pathway to homeostatic regulation
-
10.1126/science.1209038 22116877 10.1126/science.1209038 1:CAS:528:DC%2BC3MXhsV2mu7jL
-
Walter P, Ron D (2011) The unfolded protein response: from stress pathway to homeostatic regulation. Science 334:1081-1086. doi: 10.1126/science.1209038
-
(2011)
Science
, vol.334
, pp. 1081-1086
-
-
Walter, P.1
Ron, D.2
-
55
-
-
71549114849
-
Enhancement of cell viability and alkaline polygalacturonate lyase production by sorbitol co-feeding with methanol in Pichia pastoris fermentation
-
10.1016/j.biortech.2009.09.025 19800218 10.1016/j.biortech.2009.09.025 1:CAS:528:DC%2BD1MXhtlyqtL7P
-
Wang Z, Wang Y, Zhang D, Li J, Hua Z, Du G, Chen J (2010) Enhancement of cell viability and alkaline polygalacturonate lyase production by sorbitol co-feeding with methanol in Pichia pastoris fermentation. Bioresour Technol 101:1318-1323. doi: 10.1016/j.biortech.2009.09.025
-
(2010)
Bioresour Technol
, vol.101
, pp. 1318-1323
-
-
Wang, Z.1
Wang, Y.2
Zhang, D.3
Li, J.4
Hua, Z.5
Du, G.6
Chen, J.7
-
56
-
-
79960867411
-
Native-state stability determines the extent of degradation relative to secretion of protein variants from Pichia pastoris
-
10.1371/journal.pone.0022692 21818368 10.1371/journal.pone.0022692 1:CAS:528:DC%2BC3MXhtVOrsbnM
-
Whyteside G, Alcocer MJ, Kumita JR, Dobson CM, Lazarou M, Pleass RJ, Archer DB (2011a) Native-state stability determines the extent of degradation relative to secretion of protein variants from Pichia pastoris. PLoS One 6:e22692. doi: 10.1371/journal.pone.0022692
-
(2011)
PLoS One
, vol.6
, pp. 22692
-
-
Whyteside, G.1
Alcocer, M.J.2
Kumita, J.R.3
Dobson, C.M.4
Lazarou, M.5
Pleass, R.J.6
Archer, D.B.7
-
57
-
-
79953241394
-
Activation of the unfolded protein response in Pichia pastoris requires splicing of a HAC1 mRNA intron and retention of the C-terminal tail of Hac1p
-
10.1016/j.febslet.2011.02.036 21376719 10.1016/j.febslet.2011.02.036 1:CAS:528:DC%2BC3MXktF2gu7w%3D
-
Whyteside G, Nor RM, Alcocer MJ, Archer DB (2011b) Activation of the unfolded protein response in Pichia pastoris requires splicing of a HAC1 mRNA intron and retention of the C-terminal tail of Hac1p. FEBS Lett 585:1037-1041. doi: 10.1016/j.febslet.2011.02.036
-
(2011)
FEBS Lett
, vol.585
, pp. 1037-1041
-
-
Whyteside, G.1
Nor, R.M.2
Alcocer, M.J.3
Archer, D.B.4
-
58
-
-
1842856565
-
-
Springer-Verlag Heidelberg 10.1007/978-3-642-55758-3
-
Wolf K, Breunig K, Barth G (2003) Non-conventional Yeasts in Genetics, Biochemistry and, Biotechnology. Springer-Verlag, Heidelberg
-
(2003)
Non-conventional Yeasts in Genetics, Biochemistry And, Biotechnology
-
-
Wolf, K.1
Breunig, K.2
Barth, G.3
-
59
-
-
55649107479
-
Increasing the cell viability and heterologous protein expression of Pichia pastoris mutant deficient in PMR1 gene by culture condition optimization
-
10.1007/s00253-008-1666-0 18751693 10.1007/s00253-008-1666-0 1:CAS:528:DC%2BD1cXhtlaqsbbM
-
Zhao HL, Xue C, Wang Y, Yao XQ, Liu ZM (2008) Increasing the cell viability and heterologous protein expression of Pichia pastoris mutant deficient in PMR1 gene by culture condition optimization. Appl Microbiol Biotechnol 81:235-241. doi: 10.1007/s00253-008-1666-0
-
(2008)
Appl Microbiol Biotechnol
, vol.81
, pp. 235-241
-
-
Zhao, H.L.1
Xue, C.2
Wang, Y.3
Yao, X.Q.4
Liu, Z.M.5
|