메뉴 건너뛰기




Volumn 38, Issue 11, 2010, Pages 3523-3532

Going Bayesian: Model-based gene set analysis of genome-scale data

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; BAYESIAN LEARNING; BIOINFORMATICS; FUNCTIONAL GENOMICS; FUNGAL GENETICS; GENE EXPRESSION; MATHEMATICAL MODEL; NONHUMAN; PRIORITY JOURNAL; SIMULATION; YEAST;

EID: 77954376945     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkq045     Document Type: Article
Times cited : (129)

References (28)
  • 1
    • 0034069495 scopus 로고    scopus 로고
    • Gene Ontology: tool for the unification of biology
    • The Gene Ontology Consortium
    • The Gene Ontology Consortium. (2000) Gene Ontology: tool for the unification of biology. Nat. Genet., 25, 25-29.
    • (2000) Nat. Genet. , vol.25 , pp. 25-29
  • 2
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • Kanehisa, M. and Goto, S. (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res., 28, 27-30.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 4
    • 33847324900 scopus 로고    scopus 로고
    • Extensions to gene set enrichment
    • Jiang, Z. and Gentleman, R. (2007) Extensions to gene set enrichment. Bioinformatics, 23, 306-313.
    • (2007) Bioinformatics , vol.23 , pp. 306-313
    • Jiang, Z.1    Gentleman, R.2
  • 6
    • 43149116763 scopus 로고    scopus 로고
    • Gene-set approach for expression pattern analysis
    • Nam, D. and Kim, S.-Y. (2008) Gene-set approach for expression pattern analysis. Brief. Bioinform., 9, 189-197.
    • (2008) Brief. Bioinform. , vol.9 , pp. 189-197
    • Nam, D.1    Kim, S.-Y.2
  • 7
    • 55749111082 scopus 로고    scopus 로고
    • Gene set enrichment analysis using linear models and diagnostics
    • Oron, A.P., Jiang, Z. and Gentleman, R. (2008) Gene set enrichment analysis using linear models and diagnostics. Bioinformatics, 24, 2586-2591.
    • (2008) Bioinformatics , vol.24 , pp. 2586-2591
    • Oron, A.P.1    Jiang, Z.2    Gentleman, R.3
  • 8
    • 58349105009 scopus 로고    scopus 로고
    • LRpath: a logistic regression approach for identifying enriched biological groups in gene expression data
    • Sartor, M.A., Leikauf, G.D. and Medvedovic, M. (2009) LRpath: a logistic regression approach for identifying enriched biological groups in gene expression data. Bioinformatics, 25, 211-217.
    • (2009) Bioinformatics , vol.25 , pp. 211-217
    • Sartor, M.A.1    Leikauf, G.D.2    Medvedovic, M.3
  • 9
    • 34250305651 scopus 로고    scopus 로고
    • Random-set methods identify distinct aspects of the enrichment signal in gene-set analysis
    • Newton, M.A., Quintana, F.A., den Boon, J.A., Sengupta, S. and Ahlquist, P. (2007) Random-set methods identify distinct aspects of the enrichment signal in gene-set analysis. Ann. Appl. Stat., 1, 85-106.
    • (2007) Ann. Appl. Stat. , vol.1 , pp. 85-106
    • Newton, M.A.1    Quintana, F.A.2    den Boon, J.A.3    Sengupta, S.4    Ahlquist, P.5
  • 10
    • 33645851033 scopus 로고    scopus 로고
    • BayGO: Bayesian analysis of ontology term enrichment in microarray data
    • Vêncio, R.Z.N., Koide, T., Gomes, S.L. and Pereira, C.A.B. (2006) BayGO: Bayesian analysis of ontology term enrichment in microarray data. BMC Bioinformatics, 7, 86.
    • (2006) BMC Bioinformatics , vol.7 , pp. 86
    • Vêncio, R.Z.N.1    Koide, T.2    Gomes, S.L.3    Pereira, C.A.B.4
  • 11
    • 36448946146 scopus 로고    scopus 로고
    • Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis
    • Grossmann, S., Bauer, S., Robinson, P.N. and Vingron, M. (2007) Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis. Bioinformatics, 23, 3024-3031.
    • (2007) Bioinformatics , vol.23 , pp. 3024-3031
    • Grossmann, S.1    Bauer, S.2    Robinson, P.N.3    Vingron, M.4
  • 12
    • 33745626459 scopus 로고    scopus 로고
    • Improved scoring of functional groups from gene expression data by decorrelating GO graph structure
    • Alexa, A., Rahnenführer, J. and Lengauer, T. (2006) Improved scoring of functional groups from gene expression data by decorrelating GO graph structure. Bioinformatics, 22, 1600-1607.
    • (2006) Bioinformatics , vol.22 , pp. 1600-1607
    • Alexa, A.1    Rahnenführer, J.2    Lengauer, T.3
  • 14
    • 47049099111 scopus 로고    scopus 로고
    • Ontologizer 2.0-a multifunctional, tool for GO term enrichment analysis and data exploration
    • Bauer, S., Grossmann, S., Vingron, M. and Robinson, P.N. (2008) Ontologizer 2.0-a multifunctional, tool for GO term enrichment analysis and data exploration. Bioinformatics, 24, 1650-1651.
    • (2008) Bioinformatics , vol.24 , pp. 1650-1651
    • Bauer, S.1    Grossmann, S.2    Vingron, M.3    Robinson, P.N.4
  • 18
    • 69849087292 scopus 로고    scopus 로고
    • The Markov chain Monte Carlo revolution
    • Diaconis, P. (2009) The Markov chain Monte Carlo revolution. Bull. Am. Math. Soc., 46, 179-205.
    • (2009) Bull. Am. Math. Soc. , vol.46 , pp. 179-205
    • Diaconis, P.1
  • 19
    • 0010055253 scopus 로고
    • What do we know about the Metropolis algorithm?. STOC'95: Proceedings of the Twenty-Seventh Annual ACM Symposium on Theory of Computing
    • Diaconis, P. and Saloff-Coste, L. (1995) What do we know about the Metropolis algorithm?. STOC'95: Proceedings of the Twenty-Seventh Annual ACM Symposium on Theory of Computing. ACM pp. 112-129.
    • (1995) ACM , pp. 112-129
    • Diaconis, P.1    Saloff-Coste, L.2
  • 21
    • 0001969211 scopus 로고    scopus 로고
    • Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching
    • Gribskov, M. and Robinson, N.L. (1996) Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching. Comput. Chem., 20, 25-33.
    • (1996) Comput. Chem. , vol.20 , pp. 25-33
    • Gribskov, M.1    Robinson, N.L.2
  • 25
    • 11244346557 scopus 로고    scopus 로고
    • Variance stabilization applied to microarray data calibration and to the quantification of differential expression
    • Huber, W., von Heydebreck, A., Sültmann, H., Poustka, A. and Vingron, M. (2002) Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics, 18(Suppl. 1), S96-S104.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 1
    • Huber, W.1    von Heydebreck, A.2    Sültmann, H.3    Poustka, A.4    Vingron, M.5
  • 27
    • 3442886811 scopus 로고    scopus 로고
    • The pathophysiology of mitochondrial cell death
    • Green, D.R. and Kroemer, G. (2004) The pathophysiology of mitochondrial cell death. Science, 305, 626-629.
    • (2004) Science , vol.305 , pp. 626-629
    • Green, D.R.1    Kroemer, G.2
  • 28
    • 34249663294 scopus 로고    scopus 로고
    • Analyzing gene expression data in terms of gene sets: methodological issues
    • Goeman, J.J. and Bühlmann, P.P. (2007) Analyzing gene expression data in terms of gene sets: methodological issues. Bioinformatics, 23, 980-987.
    • (2007) Bioinformatics , vol.23 , pp. 980-987
    • Goeman, J.J.1    Bühlmann, P.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.