-
1
-
-
0028114541
-
Molecular computation of solutions to combinatorial problems
-
Adleman LM (1994) Molecular computation of solutions to combinatorial problems. Science 266: 1021-1024.
-
(1994)
Science
, vol.266
, pp. 1021-1024
-
-
Adleman, L.M.1
-
2
-
-
0034833023
-
Running time and program size for self-assembled squares
-
New York: Association for Computing Machinery
-
Adleman LM, Cheng Q, Goel A, Huang MDA (2001) Running time and program size for self-assembled squares. Symposium on Theory of Computing (STOC). New York: Association for Computing Machinery. pp. 740-748.
-
(2001)
Symposium on Theory of Computing (STOC)
, pp. 740-748
-
-
Adleman, L.M.1
Cheng, Q.2
Goel, A.3
Huang, M.D.A.4
-
4
-
-
14044274149
-
Logical depth and physical complexity
-
Herken R, editor Vienna: Springer-Verlag
-
Bennett CH (1995) Logical depth and physical complexity. In: Herken R, editor The universal Turing machine: A half-century survey Vienna: Springer-Verlag. pp 207-235.
-
(1995)
The Universal Turing Machine: A Half-century Survey
, pp. 207-235
-
-
Bennett, C.H.1
-
5
-
-
0003803285
-
-
Sausalito, California: University Science Books
-
Bloomfield VA, Crothers DM, Tinoco I (2000) Nucleic acids: Structures, properties, and functions. Sausalito, California: University Science Books. 672 p.
-
(2000)
Nucleic Acids: Structures, Properties, and Functions
-
-
Bloomfield, V.A.1
Crothers, D.M.2
Tinoco, I.3
-
7
-
-
0030901567
-
Self-assembly of mesoscale objects into ordered two-dimensional arrays
-
Bowden N, Terfort A, Carbeck J, Whitesides G (1997) Self-assembly of mesoscale objects into ordered two-dimensional arrays. Science 276: 233-235.
-
(1997)
Science
, vol.276
, pp. 233-235
-
-
Bowden, N.1
Terfort, A.2
Carbeck, J.3
Whitesides, G.4
-
8
-
-
0032546024
-
DNA-templated assembly and electrode attachment of a conducting silver wire
-
Braun E, Eichen Y, Sivan U, Ben-Yoseph G (1998) DNA-templated assembly and electrode attachment of a conducting silver wire. Nature 391: 775-778.
-
(1998)
Nature
, vol.391
, pp. 775-778
-
-
Braun, E.1
Eichen, Y.2
Sivan, U.3
Ben-Yoseph, G.4
-
10
-
-
33745759479
-
Error free self-assembly using error prone tiles
-
In press
-
Chen HL, Goel A (2005) Error free self-assembly using error prone tiles. DNA computing 10:. In press.
-
(2005)
DNA Computing
, vol.10
-
-
Chen, H.L.1
Goel, A.2
-
11
-
-
35048830893
-
Self-assembled circuit patterns
-
Chen J, Reif J, editors Berlin: Springer-Verlag
-
Cook M, Rothemund PWK, Winfree E (2004) Self-assembled circuit patterns. In: Chen J, Reif J, editors DNA computing 9: Berlin: Springer-Verlag. pp 91-107.
-
(2004)
DNA Computing
, vol.9
, pp. 91-107
-
-
Cook, M.1
Rothemund, P.W.K.2
Winfree, E.3
-
13
-
-
14044277446
-
Wang's carpets
-
Bear G, Greenberg MH, editors New York: Tor Books
-
Egan G (1995) Wang's carpets. In: Bear G, Greenberg MH, editors New legends New York: Tor Books. pp 349-378.
-
(1995)
New Legends
, pp. 349-378
-
-
Egan, G.1
-
14
-
-
0027255843
-
DNA double-crossover molecules
-
Fu TJ, Seeman NC (1993) DNA double-crossover molecules. Biochemistry 32: 3211-3220.
-
(1993)
Biochemistry
, vol.32
, pp. 3211-3220
-
-
Fu, T.J.1
Seeman, N.C.2
-
15
-
-
0009936820
-
Aperiodicity in one-dimensional cellular automata
-
Jen E (1990) Aperiodicity in one-dimensional cellular automata. Physica D 45: 3-18.
-
(1990)
Physica D
, vol.45
, pp. 3-18
-
-
Jen, E.1
-
17
-
-
0001902056
-
Three approaches to the quantitative definition of information
-
Kolmogorov AN (1965) Three approaches to the quantitative definition of information. Problems Inform Transmission 1: 1-7.
-
(1965)
Problems Inform Transmission
, vol.1
, pp. 1-7
-
-
Kolmogorov, A.N.1
-
18
-
-
0008042521
-
Experimental progress in computational by self-assembly of DNA tilings
-
Winfree E, Gifford DK, editors Providence, Rhode Island: American Mathematical Society
-
LaBean TH, Winfree E, Reif JH (2000a) Experimental progress in computational by self-assembly of DNA tilings. In: Winfree E, Gifford DK, editors DNA-based computers V Providence, Rhode Island: American Mathematical Society. pp 123-140.
-
(2000)
DNA-based Computers V
, pp. 123-140
-
-
LaBean, T.H.1
Winfree, E.2
Reif, J.H.3
-
19
-
-
0034620686
-
Construction, analysis, ligation, and self-assembly of DNA triple crossover complexes
-
LaBean TH, Yan H, Kopatsch J, Liu F, Winfree E, et al. (2000b) Construction, analysis, ligation, and self-assembly of DNA triple crossover complexes. J Am Chem Soc 122: 1848-1860.
-
(2000)
J Am Chem Soc
, vol.122
, pp. 1848-1860
-
-
LaBean, T.H.1
Yan, H.2
Kopatsch, J.3
Liu, F.4
Winfree, E.5
-
20
-
-
0021404339
-
Randomness conservation inequalities: Information and independence in mathematical theories
-
Levin L (1984) Randomness conservation inequalities: Information and independence in mathematical theories. Inform Control 61: 15-37.
-
(1984)
Inform Control
, vol.61
, pp. 15-37
-
-
Levin, L.1
-
21
-
-
0030061199
-
Antiparallel DNA double crossover molecules as components for nanoconstruction
-
Li X, Yang X, Qi J, Seeman NC (1996) Antiparallel DNA double crossover molecules as components for nanoconstruction. J Am Chem Soc 118: 6131-6140.
-
(1996)
J Am Chem Soc
, vol.118
, pp. 6131-6140
-
-
Li, X.1
Yang, X.2
Qi, J.3
Seeman, N.C.4
-
22
-
-
0001223260
-
Universal computation in simple one-dimensional cellular automata
-
Lindgren K, Nordahl M (1990) Universal computation in simple onedimensional cellular automata. Complex Sys 4: 299-318.
-
(1990)
Complex Sys
, vol.4
, pp. 299-318
-
-
Lindgren, K.1
Nordahl, M.2
-
24
-
-
0033575066
-
Designed two-dimensional DNA Holliday junction arrays visualized by atomic force microscopy
-
Mao C, Sun W, Seeman NC (1999) Designed two-dimensional DNA Holliday junction arrays visualized by atomic force microscopy. J Am Chem Soc 121: 5437-5443.
-
(1999)
J Am Chem Soc
, vol.121
, pp. 5437-5443
-
-
Mao, C.1
Sun, W.2
Seeman, N.C.3
-
25
-
-
0034727072
-
Logical computation using algorithmic self-assembly of DNA triple-crossover molecules
-
Mao C, LaBean TH, Reif JH, Seeman NC (2000) Logical computation using algorithmic self-assembly of DNA triple-crossover molecules. Nature 407: 493-496.
-
(2000)
Nature
, vol.407
, pp. 493-496
-
-
Mao, C.1
LaBean, T.H.2
Reif, J.H.3
Seeman, N.C.4
-
26
-
-
0028816732
-
Refinement of the solution structure of a branched DNA three-way junction
-
Ouporov IV, Leontis NB (1995) Refinement of the solution structure of a branched DNA three-way junction. Biophys J 68: 266-274.
-
(1995)
Biophys J
, vol.68
, pp. 266-274
-
-
Ouporov, I.V.1
Leontis, N.B.2
-
27
-
-
0001382630
-
A self-reproducing analogue
-
Penrose LS, Penrose R (1957) A self-reproducing analogue. Nature 179: 1183.
-
(1957)
Nature
, vol.179
, pp. 1183
-
-
Penrose, L.S.1
Penrose, R.2
-
28
-
-
0009276847
-
Tiling, periodicity, and crystals
-
Radin C (1985) Tiling, periodicity, and crystals. J Math Phys 26: 1342-1344.
-
(1985)
J Math Phys
, vol.26
, pp. 1342-1344
-
-
Radin, C.1
-
29
-
-
0000091522
-
Local parallel biomolecular computing
-
Rubin H, Wood DH, editors Providence, Rhode Island: American Mathematical Society
-
Reif J (1999) Local parallel biomolecular computing. In: Rubin H, Wood DH, editors DNA-based computers III Providence, Rhode Island: American Mathematical Society. pp 217-254.
-
(1999)
DNA-based Computers III
, pp. 217-254
-
-
Reif, J.1
-
30
-
-
33645970250
-
Compact error-resilient computational DNA tiling assemblies
-
In press
-
Reif JH, Sahu S, Yin P (2005) Compact error-resilient computational DNA tiling assemblies. DNA computing 10:. In press.
-
(2005)
DNA Computing
, vol.10
-
-
Reif, J.H.1
Sahu, S.2
Yin, P.3
-
31
-
-
0018976521
-
Helical periodicity of DNA determined by enzyme digestion
-
Rhodes D, Klug A (1980) Helical periodicity of DNA determined by enzyme digestion. Nature 286: 573-578.
-
(1980)
Nature
, vol.286
, pp. 573-578
-
-
Rhodes, D.1
Klug, A.2
-
32
-
-
0030286377
-
Small universal Turing machines
-
Rogozhin Y (1996) Small universal Turing machines. Theor Comput Sci 168: 215-240.
-
(1996)
Theor Comput Sci
, vol.168
, pp. 215-240
-
-
Rogozhin, Y.1
-
33
-
-
0033971729
-
Using lateral capillary forces to compute by self-assembly
-
Rothemund PWK (2000) Using lateral capillary forces to compute by self-assembly. Proc Natl Acad Sci U S A 97: 984-989.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 984-989
-
-
Rothemund, P.W.K.1
-
34
-
-
0033701726
-
The program-size complexity of self-assembled squares
-
New York: Association for Computing Machinery
-
Rothemund PWK, Winfree E (2000) The program-size complexity of self-assembled squares. Symposium on Theory of Computing (STOC). New York: Association for Computing Machinery. pp 459-468.
-
(2000)
Symposium on Theory of Computing (STOC)
, pp. 459-468
-
-
Rothemund, P.W.K.1
Winfree, E.2
-
35
-
-
11444268456
-
Design and characterization of programmable DNA nanotubes
-
In press
-
Rothemund PWK, Ekani-Nkodo A, Papadakis N, Kumar A, Fygenson DK, et al. (2004) Design and characterization of programmable DNA nanotubes. J Am Chem Soc. In press.
-
(2004)
J Am Chem Soc
-
-
Rothemund, P.W.K.1
Ekani-Nkodo, A.2
Papadakis, N.3
Kumar, A.4
Fygenson, D.K.5
-
36
-
-
33645969323
-
Controlling nucleation rates in algorithmic self-assembly
-
In press
-
Schulman R, Winfree E (2005) Controlling nucleation rates in algorithmic self-assembly. DNA computing 10:. In press.
-
(2005)
DNA Computing
, vol.10
-
-
Schulman, R.1
Winfree, E.2
-
37
-
-
35048865924
-
One dimensional boundaries for DNA tile assembly
-
Chen J, Reif J, editors Berlin: Springer-Verlag
-
Schulman R, Lee S, Papadakis N, Winfree E (2004) One dimensional boundaries for DNA tile assembly. In: Chen J, Reif J, editors DNA computing 9 Berlin: Springer-Verlag. pp 108-125.
-
(2004)
DNA Computing
, vol.9
, pp. 108-125
-
-
Schulman, R.1
Lee, S.2
Papadakis, N.3
Winfree, E.4
-
38
-
-
0020373595
-
Nucleic-acid junctions and lattices
-
Seeman NC (1982) Nucleic-acid junctions and lattices. J Theor Biol 99: 237-247.
-
(1982)
J Theor Biol
, vol.99
, pp. 237-247
-
-
Seeman, N.C.1
-
39
-
-
0025635653
-
De novo design of sequences for nucleic acid structural engineering
-
Seeman NC (1990) De novo design of sequences for nucleic acid structural engineering. J Biomol Struct Dyn 8: 573-581.
-
(1990)
J Biomol Struct Dyn
, vol.8
, pp. 573-581
-
-
Seeman, N.C.1
-
40
-
-
0037732852
-
Biochemistry and structural DNA nanotechnology: An evolving symbiotic relationship
-
Seeman NC (2003) Biochemistry and structural DNA nanotechnology: An evolving symbiotic relationship. Biochemistry 42: 7259-7269.
-
(2003)
Biochemistry
, vol.42
, pp. 7259-7269
-
-
Seeman, N.C.1
-
42
-
-
44249087065
-
Complexity of self-assembled scale-invariant shapes
-
In press
-
Soloveichik D, Winfree E (2005) Complexity of self-assembled scale-invariant shapes. DNA computing 10:. In press.
-
(2005)
DNA Computing
, vol.10
-
-
Soloveichik, D.1
Winfree, E.2
-
43
-
-
0028784138
-
Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides
-
Stemmer WPC, Crameri A, Ha KD, Brennan TM, Heyneker HL (1995) Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides. Gene 164: 49-53.
-
(1995)
Gene
, vol.164
, pp. 49-53
-
-
Stemmer, W.P.C.1
Crameri, A.2
Ha, K.D.3
Brennan, T.M.4
Heyneker, H.L.5
-
44
-
-
84960561455
-
On computable numbers, with an application to the Entscheidungsproblem
-
Turing A (1936) On computable numbers, with an application to the Entscheidungsproblem. Proc Lond Math Soc 42: 230-265.
-
(1936)
Proc Lond Math Soc
, vol.42
, pp. 230-265
-
-
Turing, A.1
-
45
-
-
0003466248
-
-
Edited and completed by AW Burks. Urbana, Illinois: University of Illinois Press
-
von Neumann J (1966) Theory of self-reproducing automata. Edited and completed by AW Burks. Urbana, Illinois: University of Illinois Press. 388 p.
-
(1966)
Theory of Self-reproducing Automata
-
-
Von Neumann, J.1
-
46
-
-
84944488797
-
Proving theorems by pattern recognition II
-
Wang H (1961) Proving theorems by pattern recognition II. Bell System Tech J 40: 1-42.
-
(1961)
Bell System Tech J
, vol.40
, pp. 1-42
-
-
Wang, H.1
-
47
-
-
14044269333
-
-
Technical report BL-30 (II-15) Cambridge, Massachusetts: Harvard Computation Laboratory
-
Wang H (1962) An unsolvable problem on dominoes. Technical report BL-30 (II-15) Cambridge, Massachusetts: Harvard Computation Laboratory.
-
(1962)
An Unsolvable Problem on Dominoes
-
-
Wang, H.1
-
48
-
-
0018370487
-
Helical repeat of DNA in solution
-
Wang JC (1979) Helical repeat of DNA in solution. Proc Natl Acad Sci U S A 76: 200-203.
-
(1979)
Proc Natl Acad Sci U S A
, vol.76
, pp. 200-203
-
-
Wang, J.C.1
-
49
-
-
0026433721
-
Molecular self-assembly and nanochemistry: A chemical strategy for the synthesis of nanostructures
-
Whitesides GM, Mathias JP, Seto CT (1991) Molecular self-assembly and nanochemistry: A chemical strategy for the synthesis of nanostructures. Science 254: 1312-1319.
-
(1991)
Science
, vol.254
, pp. 1312-1319
-
-
Whitesides, G.M.1
Mathias, J.P.2
Seto, C.T.3
-
50
-
-
0001130354
-
On the computational power of DNA annealing and ligation
-
Lipton RJ, Baum EB, editors Providence, Rhode Island: American Mathematical Society
-
Winfree E (1996) On the computational power of DNA annealing and ligation. In: Lipton RJ, Baum EB, editors DNA-based computers Providence, Rhode Island: American Mathematical Society. pp 199-221.
-
(1996)
DNA-based Computers
, pp. 199-221
-
-
Winfree, E.1
-
51
-
-
12744255600
-
-
Technical report CS-TR:1998.22 Pasadena, California: California Institute of Technology
-
Winfree E (1998a) Simulations of computing by self-assembly. Technical report CS-TR:1998.22 Pasadena, California: California Institute of Technology.
-
(1998)
Simulations of Computing by Self-assembly
-
-
Winfree, E.1
-
52
-
-
0011738656
-
-
Technical report CS-TR:1998.23 Pasadena, California: California Institute of Technology
-
Winfree E (1998b) Whiplash PCR for O(1) computing. Technical report CS-TR:1998.23 Pasadena, California: California Institute of Technology.
-
(1998)
Whiplash PCR for O(1) Computing
-
-
Winfree, E.1
-
53
-
-
35048869195
-
Proofreading tile sets: Error-correction for algorithmic self-assembly
-
Chen J, Reif J, editors Berlin: Springer-Verlag
-
Winfree E, Bekbolatov R (2004) Proofreading tile sets: Error-correction for algorithmic self-assembly. In: Chen J, Reif J, editors DNA computing 9 Berlin: Springer-Verlag. pp 126-144.
-
(2004)
DNA Computing
, vol.9
, pp. 126-144
-
-
Winfree, E.1
Bekbolatov, R.2
-
54
-
-
0032490948
-
Design and self-assembly of two-dimensional DNA crystals
-
Winfree E, Liu F, Wenzler LA, Seeman NC (1998a) Design and self-assembly of two-dimensional DNA crystals. Nature 394: 539-544.
-
(1998)
Nature
, vol.394
, pp. 539-544
-
-
Winfree, E.1
Liu, F.2
Wenzler, L.A.3
Seeman, N.C.4
-
55
-
-
0000223418
-
Universal computation via self-assembly of DNA: Some theory and experiments
-
Landweber LF, Baum EB, editors Providence, Rhode Island: American Mathematical Society
-
Winfree E, Yang X, Seeman NC (1998b) Universal computation via self-assembly of DNA: Some theory and experiments. In: Landweber LF, Baum EB, editors DNA-based computers II Providence, Rhode Island: American Mathematical Society. pp 191-213.
-
(1998)
DNA-based Computers II
, pp. 191-213
-
-
Winfree, E.1
Yang, X.2
Seeman, N.C.3
-
56
-
-
46149128523
-
Random sequence generation by cellular automata
-
Wolfram S (1986) Random sequence generation by cellular automata. Adv Appl Math 7: 123.
-
(1986)
Adv Appl Math
, vol.7
, pp. 123
-
-
Wolfram, S.1
-
57
-
-
0037816375
-
Directed nucleation assembly of DNA tile complexes for barcode-patterned lattices
-
Yan H, LaBean TH, Feng L, Reif JH (2003a) Directed nucleation assembly of DNA tile complexes for barcode-patterned lattices. Proc Natl Acad Sci U S A 100: 8103-8108.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 8103-8108
-
-
Yan, H.1
LaBean, T.H.2
Feng, L.3
Reif, J.H.4
-
58
-
-
0141534348
-
DNA-templated self-assembly of protein arrays and highly conductive nanowires
-
Yan H, Park SH, Finkelstein G, Reif JH, LaBean TH (2003b) DNA-templated self-assembly of protein arrays and highly conductive nanowires. Science 301: 1882-1884.
-
(2003)
Science
, vol.301
, pp. 1882-1884
-
-
Yan, H.1
Park, S.H.2
Finkelstein, G.3
Reif, J.H.4
LaBean, T.H.5
|