-
1
-
-
0036794074
-
The SBP2 and 15.5 kD/Snu13p proteins share the same RNA binding domain: Identification of SBP2 amino acids important to SECIS RNA binding
-
Allmang C, Carbon P, Krol A. 2002. The SBP2 and 15.5 kD/Snu13p proteins share the same RNA binding domain: Identification of SBP2 amino acids important to SECIS RNA binding. RNA 8: 1308-1318.
-
(2002)
RNA
, vol.8
, pp. 1308-1318
-
-
Allmang, C.1
Carbon, P.2
Krol, A.3
-
2
-
-
43449093704
-
Mutations outside the anisomycin-binding site can make ribosomes drug resistant
-
Blaha G, Gurel G, Schroeder SJ, Moore PB, Steitz TA. 2008. Mutations outside the anisomycin-binding site can make ribosomes drug resistant. J Mol Biol 379: 505-519.
-
(2008)
J Mol Biol
, vol.379
, pp. 505-519
-
-
Blaha, G.1
Gurel, G.2
Schroeder, S.J.3
Moore, P.B.4
Steitz, T.A.5
-
3
-
-
34447528960
-
A loop-loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control
-
Blouin S, Lafontaine DA. 2007. A loop-loop interaction and a K-turn motif located in the lysine aptamer domain are important for the riboswitch gene regulation control. RNA 13: 1256-1267.
-
(2007)
RNA
, vol.13
, pp. 1256-1267
-
-
Blouin, S.1
Lafontaine, D.A.2
-
5
-
-
2942571539
-
The Comparative RNA Web (CRW) Site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
doi: 10.1186/1471-2105-3-2
-
Cannone JJ, Subramanian S, Schnare MN, Collett JR, D'Souza LM, Du Y, Feng B, Lin N, Madabusi LV, Muller KM, et al. 2002. The Comparative RNA Web (CRW) Site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinformatics 3: 2. doi: 10.1186/1471-2105-3-2.
-
(2002)
BMC Bioinformatics
, vol.3
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
D'Souza, L.M.5
Du, Y.6
Feng, B.7
Lin, N.8
Madabusi, L.V.9
Muller, K.M.10
-
6
-
-
20444464100
-
Loss of G-A base pairs is insufficient for achieving a large opening of U4 snRNA K-turn motif
-
Cojocaru V, Klement R, Jovin TM. 2005. Loss of G-A base pairs is insufficient for achieving a large opening of U4 snRNA K-turn motif. Nucleic Acids Res 33: 3435-3446.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 3435-3446
-
-
Cojocaru, V.1
Klement, R.2
Jovin, T.M.3
-
9
-
-
0030711050
-
Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs
-
Ganot P, Bortolin ML, Kiss T. 1997. Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 89: 799-809. (Pubitemid 27516183)
-
(1997)
Cell
, vol.89
, Issue.5
, pp. 799-809
-
-
Ganot, P.1
Bortolin, M.-L.2
Kiss, T.3
-
10
-
-
58149191274
-
Rfam: Updates to the RNA families database
-
Gardner PP, Daub J, Tate JG, Nawrocki EP, Kolbe DL, Lindgreen S, Wilkinson AC, Finn RD, Griffiths-Jones S, Eddy SR, et al. 2009. Rfam: Updates to the RNA families database. Nucleic Acids Res 37: D136-D140.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Gardner, P.P.1
Daub, J.2
Tate, J.G.3
Nawrocki, E.P.4
Kolbe, D.L.5
Lindgreen, S.6
Wilkinson, A.C.7
Finn, R.D.8
Griffiths-Jones, S.9
Eddy, S.R.10
-
11
-
-
1642458421
-
The kink-turn motif in RNA is dimorphic, and metal ion dependent
-
Goody TA, Melcher SE, Norman DG, Lilley DMJ. 2003. The kink-turn motif in RNA is dimorphic, and metal ion dependent. RNA 10: 254-264.
-
(2003)
RNA
, vol.10
, pp. 254-264
-
-
Goody, T.A.1
Melcher, S.E.2
Norman, D.G.3
Lilley, D.M.J.4
-
12
-
-
2342638215
-
Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8 å resolution
-
Hamma T, Ferré-D'Amaré AR. 2004. Structure of protein L7Ae bound to a K-turn derived from an archaeal box H/ACA sRNA at 1.8 Å resolution. Structure 12: 893-903.
-
(2004)
Structure
, vol.12
, pp. 893-903
-
-
Hamma, T.1
Ferré-D'Amaré, A.R.2
-
13
-
-
38949114262
-
Folding of the SAM aptamer is determined by the formation of a K-turn-dependent pseudoknot
-
Heppell B, Lafontaine DA. 2008. Folding of the SAM aptamer is determined by the formation of a K-turn-dependent pseudoknot. Biochemistry 47: 1490-1499.
-
(2008)
Biochemistry
, vol.47
, pp. 1490-1499
-
-
Heppell, B.1
Lafontaine, D.A.2
-
14
-
-
84975553202
-
Closed-form solution of absolute orientation using unit quaternions
-
Horn BKP. 1986. Closed-form solution of absolute orientation using unit quaternions. J Opt Soc Am 4: 629-642.
-
(1986)
J Opt Soc Am
, vol.4
, pp. 629-642
-
-
Horn, B.K.P.1
-
15
-
-
84893482610
-
A solution for the best rotation to relate two sets of vectors
-
Kabsch W. 1976. A solution for the best rotation to relate two sets of vectors. Acta Crystallogr 32: 922-923.
-
(1976)
Acta Crystallogr
, vol.32
, pp. 922-923
-
-
Kabsch, W.1
-
16
-
-
0030604698
-
Site-specific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs
-
Kiss-Laszlo Z, Henry Y, Bachellerie JP, Caizergues-Ferrer M, Kiss T. 1996. Site-specific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs. Cell 85: 1077-1088.
-
(1996)
Cell
, vol.85
, pp. 1077-1088
-
-
Kiss-Laszlo, Z.1
Henry, Y.2
Bachellerie, J.P.3
Caizergues-Ferrer, M.4
Kiss, T.5
-
18
-
-
0028225137
-
A novel RNA-binding motif in omnipotent suppressors of translation termination, ribosomal proteins and a ribosome modification enzyme?
-
Koonin EV, Bork P, Sander C. 1994. A novel RNA-binding motif in omnipotent suppressors of translation termination, ribosomal proteins and a ribosome modification enzyme? Nucleic Acids Res 22: 2166-2167.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 2166-2167
-
-
Koonin, E.V.1
Bork, P.2
Sander, C.3
-
19
-
-
0037082424
-
Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu13p snoRNP core protein
-
Kuhn JF, Tran EJ, Maxwell ES. 2002. Archaeal ribosomal protein L7 is a functional homolog of the eukaryotic 15.5kD/Snu13p snoRNP core protein. Nucleic Acids Res 30: 931-941.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 931-941
-
-
Kuhn, J.F.1
Tran, E.J.2
Maxwell, E.S.3
-
20
-
-
0035010211
-
Geometric nomenclature and classification of RNA base pairs
-
Leontis NB, Westhof E. 2001. Geometric nomenclature and classification of RNA base pairs. RNA 7: 499-512.
-
(2001)
RNA
, vol.7
, pp. 499-512
-
-
Leontis, N.B.1
Westhof, E.2
-
21
-
-
0029111762
-
Kinking of DNA and RNA by base bulges
-
Lilley DMJ. 1995. Kinking of DNA and RNA by base bulges. Proc Natl Acad Sci 92: 7140-7142.
-
(1995)
Proc Natl Acad Sci
, vol.92
, pp. 7140-7142
-
-
Lilley, D.M.J.1
-
22
-
-
33846441637
-
The role of specific 2́-hydroxyl groups in the stabilization of the folded conformation of kink-turn RNA
-
Liu J, Lilley DMJ. 2007. The role of specific 2́-hydroxyl groups in the stabilization of the folded conformation of kink-turn RNA. RNA 13: 200-210.
-
(2007)
RNA
, vol.13
, pp. 200-210
-
-
Liu, J.1
Lilley, D.M.J.2
-
23
-
-
0032710024
-
A novel loop-loop recognition motif in the yeast ribosomal protein L30 autoregulatory RNA complex
-
Mao H, White SA, Williamson JR. 1999. A novel loop-loop recognition motif in the yeast ribosomal protein L30 autoregulatory RNA complex. Nat Struct Biol 6: 1139-1147.
-
(1999)
Nat Struct Biol
, vol.6
, pp. 1139-1147
-
-
Mao, H.1
White, S.A.2
Williamson, J.R.3
-
24
-
-
0038043490
-
A structural, phylogenetic, and functional study of 15.5-kD/Snu13 protein binding on U3 small nucleolar RNA
-
Marmier-Gourrier N, Clery A, Senty-Segault V, Charpentier B, Schlotter F, Leclerc F, Fournier R, Branlant C. 2003. A structural, phylogenetic, and functional study of 15.5-kD/Snu13 protein binding on U3 small nucleolar RNA. RNA 9: 821-838.
-
(2003)
RNA
, vol.9
, pp. 821-838
-
-
Marmier-Gourrier, N.1
Clery, A.2
Senty-Segault, V.3
Charpentier, B.4
Schlotter, F.5
Leclerc, F.6
Fournier, R.7
Branlant, C.8
-
25
-
-
0141940267
-
Biochemical characterization of the kink-turn RNA motif
-
Matsumura S, Ikawa Y, Inoue T. 2003. Biochemical characterization of the kink-turn RNA motif. Nucleic Acids Res 31: 5544-5551.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 5544-5551
-
-
Matsumura, S.1
Ikawa, Y.2
Inoue, T.3
-
26
-
-
47549093347
-
A toolkit for publishing enhanced figures
-
McMahon B, Hanson RM. 2008. A toolkit for publishing enhanced figures. J Appl Crystallogr 41: 811-814.
-
(2008)
J Appl Crystallogr
, vol.41
, pp. 811-814
-
-
McMahon, B.1
Hanson, R.M.2
-
27
-
-
33745628336
-
Structure of the S-adenosylmethionine riboswitch regulatory mRNA element
-
DOI 10.1038/nature04819, PII N04819
-
Montange RK, Batey RT. 2006. Structure of the S-adenosylmethionine riboswitch regulatory mRNA element. Nature 441: 1172-1175. (Pubitemid 43990740)
-
(2006)
Nature
, vol.441
, Issue.7097
, pp. 1172-1175
-
-
Montange, R.K.1
Batey, R.T.2
-
28
-
-
2342475659
-
Molecular basis of box C/D RNA-protein interactions; cocrystal structure of archaeal L7Ae and a box C/D RNA
-
Moore T, Zhang Y, Fenley MO, Li H. 2004. Molecular basis of box C/D RNA-protein interactions; cocrystal structure of archaeal L7Ae and a box C/D RNA. Structure 12: 807-818.
-
(2004)
Structure
, vol.12
, pp. 807-818
-
-
Moore, T.1
Zhang, Y.2
Fenley, M.O.3
Li, H.4
-
29
-
-
0033229873
-
Functional interaction of a novel 15.5kD [U4/U6.U5] tri-snRNP protein with the 5́ stem-loop of U4 snRNA
-
Nottrott S, Hartmuth K, Fabrizio P, Urlaub H, Vidovic I, Ficner R, Lührmann R. 1999. Functional interaction of a novel 15.5kD [U4/U6.U5] tri-snRNP protein with the 5́ stem-loop of U4 snRNA. EMBO J 18: 6119-6133.
-
(1999)
EMBO J
, vol.18
, pp. 6119-6133
-
-
Nottrott, S.1
Hartmuth, K.2
Fabrizio, P.3
Urlaub, H.4
Vidovic, I.5
Ficner, R.6
Lührmann, R.7
-
30
-
-
17844375121
-
Hinge-like motions in RNA kink-turns: The role of the second A-minor motif and nominally unpaired bases
-
Razga F, Koca J, Sponer J, Leontis NB. 2005. Hinge-like motions in RNA kink-turns: The role of the second A-minor motif and nominally unpaired bases. Biophys J 5: 3466-3485.
-
(2005)
Biophys J
, vol.5
, pp. 3466-3485
-
-
Razga, F.1
Koca, J.2
Sponer, J.3
Leontis, N.B.4
-
31
-
-
33646357500
-
RNA kink-turns as molecular elbows: Hydration, cation binding, and large-scale dynamics
-
Razga F, Zacharias M, Reblova K, Koca J, Sponer J. 2006. RNA kink-turns as molecular elbows: Hydration, cation binding, and large-scale dynamics. Structure 14: 825-835.
-
(2006)
Structure
, vol.14
, pp. 825-835
-
-
Razga, F.1
Zacharias, M.2
Reblova, K.3
Koca, J.4
Sponer, J.5
-
32
-
-
0037324527
-
Binding of L7Ae protein to the K-turn of archaeal snoRNAs: A shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea
-
Rozhdestvensky TS, Tang TH, Tchirkova IV, Brosius J, Bachellerie J-P, Hüttenhofer A. 2003. Binding of L7Ae protein to the K-turn of archaeal snoRNAs: A shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea. Nucleic Acids Res 31: 869-877.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 869-877
-
-
Rozhdestvensky, T.S.1
Tang, T.H.2
Tchirkova, I.V.3
Brosius, J.4
Bachellerie, J.-P.5
Hüttenhofer, A.6
-
33
-
-
75349113989
-
Ion-induced folding of a kink turn that departs from the conventional sequence
-
Schroeder KT, Lilley DMJ. 2009. Ion-induced folding of a kink turn that departs from the conventional sequence. Nucleic Acids Res 37: 7281-7289.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 7281-7289
-
-
Schroeder, K.T.1
Lilley, D.M.J.2
-
34
-
-
24044431940
-
Molecular basis for RNA kink-turn recognition by the h15.5K small RNP protein
-
Szewczak LB, Gabrielsen JS, Degregorio SJ, Strobel SA, Steitz JA. 2005. Molecular basis for RNA kink-turn recognition by the h15.5K small RNP protein. RNA 11: 1407-1419.
-
(2005)
RNA
, vol.11
, pp. 1407-1419
-
-
Szewczak, L.B.1
Gabrielsen, J.S.2
Degregorio, S.J.3
Strobel, S.A.4
Steitz, J.A.5
-
35
-
-
47049124440
-
The importance of G.A hydrogen bonding in the metal ion- and protein-induced folding of a kink turn RNA
-
Turner B, Lilley DM. 2008. The importance of G.A hydrogen bonding in the metal ion- and protein-induced folding of a kink turn RNA. J Mol Biol 381: 431-442.
-
(2008)
J Mol Biol
, vol.381
, pp. 431-442
-
-
Turner, B.1
Lilley, D.M.2
-
36
-
-
22244483207
-
Induced fit of RNA on binding the L7Ae protein to the kink-turn motif
-
Turner B, Melcher SE, Wilson TJ, Norman DG, Lilley DMJ. 2005. Induced fit of RNA on binding the L7Ae protein to the kink-turn motif. RNA 11: 1192-1200.
-
(2005)
RNA
, vol.11
, pp. 1192-1200
-
-
Turner, B.1
Melcher, S.E.2
Wilson, T.J.3
Norman, D.G.4
Lilley, D.M.J.5
-
37
-
-
0034509631
-
Crystal structure of the spliceosomal 15.5kD protein bound to a U4 snRNA fragment
-
DOI 10.1016/S1097-2765(00)00131-3
-
Vidovic I, Nottrott S, Hartmuth K, Lührmann R, Ficner R. 2000. Crystal structure of the spliceosomal 15.5 kD protein bound to a U4 snRNA fragment. Mol Cell 6: 1331-1342. (Pubitemid 32045926)
-
(2000)
Molecular Cell
, vol.6
, Issue.6
, pp. 1331-1342
-
-
Vidovic, I.1
Nottrott, S.2
Hartmuth, K.3
Luhrmann, R.4
Ficner, R.5
-
38
-
-
0036889385
-
Conserved stem II of the box C/D motif is essential for nucleolar localization and is required, along with the 15.5K protein, for the hierarchical assembly of the box C/D snoRNP
-
Watkins NJ, Dickmanns A, Lührmann R. 2002. Conserved stem II of the box C/D motif is essential for nucleolar localization and is required, along with the 15.5K protein, for the hierarchical assembly of the box C/D snoRNP. Mol Cell Biol 22: 8342-8352.
-
(2002)
Mol Cell Biol
, vol.22
, pp. 8342-8352
-
-
Watkins, N.J.1
Dickmanns, A.2
Lührmann, R.3
-
39
-
-
1242296360
-
Internal loop mutations in the ribosomal protein L30 binding site of the yeast L30 RNA transcript
-
White SA, Hoeger M, Schweppe JJ, Shillingford A, Shipilov V, Zarutskie J. 2004. Internal loop mutations in the ribosomal protein L30 binding site of the yeast L30 RNA transcript. RNA 10: 369-377.
-
(2004)
RNA
, vol.10
, pp. 369-377
-
-
White, S.A.1
Hoeger, M.2
Schweppe, J.J.3
Shillingford, A.4
Shipilov, V.5
Zarutskie, J.6
-
40
-
-
0034699518
-
Structure of the 30S ribosomal subunit
-
Wimberly BT, Brodersen DE, Clemons WM Jr, Morgan-Warren RJ, Carter AP, Vonrhein C, Hartsch T, Ramakrishnan V. 2000. Structure of the 30S ribosomal subunit. Nature 407: 327-339.
-
(2000)
Nature
, vol.407
, pp. 327-339
-
-
Wimberly, B.T.1
Brodersen, D.E.2
Clemons Jr., W.M.3
Morgan-Warren, R.J.4
Carter, A.P.5
Vonrhein, C.6
Hartsch, T.7
Ramakrishnan, V.8
-
41
-
-
0034897731
-
The GA motif: An RNA element common to bacterial antitermination systems, rRNA, and eukaryotic RNAs
-
Winkler WC, Grundy FJ, Murphy BA, Henkin TM. 2001. The GA motif: An RNA element common to bacterial antitermination systems, rRNA, and eukaryotic RNAs. RNA 7: 1165-1172.
-
(2001)
RNA
, vol.7
, pp. 1165-1172
-
-
Winkler, W.C.1
Grundy, F.J.2
Murphy, B.A.3
Henkin, T.M.4
-
42
-
-
25844527373
-
Detecting protein-induced folding of the U4 snRNA kink-turn by single-molecule multiparameter FRET measurements
-
Wozniak AK, Nottrott S, Kuhn-Holsken E, Schroder GF, Grubmuller H, Lührmann R, Seidel CA, Oesterhelt F. 2005. Detecting protein-induced folding of the U4 snRNA kink-turn by single-molecule multiparameter FRET measurements. RNA 11: 1545-1554.
-
(2005)
RNA
, vol.11
, pp. 1545-1554
-
-
Wozniak, A.K.1
Nottrott, S.2
Kuhn-Holsken, E.3
Schroder, G.F.4
Grubmuller, H.5
Lührmann, R.6
Seidel, C.A.7
Oesterhelt, F.8
-
43
-
-
35548959589
-
Dynamic interactions within sub-complexes of the H/ACA pseudouridylation guide RNP
-
Youssef OA, Terns RM, Terns MP. 2007. Dynamic interactions within sub-complexes of the H/ACA pseudouridylation guide RNP. Nucleic Acids Res 35: 6196-6206.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 6196-6206
-
-
Youssef, O.A.1
Terns, R.M.2
Terns, M.P.3
|