Systematization of the protein sequence diversity in enzymes related to secondary metabolic pathways in plants, in the context of big data biology inspired by the KNApSAcK motorcycle database

Plant and Cell Physiology

Volumn 54, Issue 5, 2013, Pages 711-727

  Ikeda, Shun ^a   Abe, Takashi ^b   Nakamura, Yukiko ^a   Kibinge, Nelson ^a   Hirai Morita, Aki ^a   Nakatani, Atsushi ^a   Ono, Naoaki ^a   Ikemura, Toshimichi ^c   Nakamura, Kensuke ^d   Altaf Ul Amin, Md ^a   Kanaya, Shigehiko ^a,e  

^a NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

^b NIIGATA UNIVERSITY   (Japan)

^c NAGAHAMA INSTITUTE OF BIO SCIENCE AND TECHNOLOGY   (Japan)

^d MAEBASHI INSTITUTE OF TECHNOLOGY   (Japan)

^e RIKEN Center for Sustainable Resource Science   (Japan)

Author keywords

Batch learning self organizing map; Big data biology; Database; KNApSAcK family; Secondary metabolic pathway; Species metabolite relationship

Indexed keywords

ALKALOID; CYTOCHROME P450; FLAVONOID; PEPTIDE; TERPENE SYNTHASE; TRANSFERASE; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BATCH-LEARNING SELF-ORGANIZING MAP; BIG DATA BIOLOGY; CHEMISTRY; DATA BASE; ENZYMOLOGY; KNAPSACK FAMILY; METABOLISM; METABOLOMICS; PLANT; SECONDARY METABOLIC PATHWAY; SECONDARY METABOLISM; SPECIES-METABOLITE RELATIONSHIP;

BATCH-LEARNING SELF-ORGANIZING MAP; BIG DATA BIOLOGY; DATABASE; KNAPSACK FAMILY; SECONDARY METABOLIC PATHWAY; SPECIES-METABOLITE RELATIONSHIP;

ALKALOIDS; ALKYL AND ARYL TRANSFERASES; AMINO ACID SEQUENCE; CYTOCHROME P-450 ENZYME SYSTEM; DATABASES AS TOPIC; FLAVONOIDS; METABOLOMICS; PEPTIDES; PLANT PROTEINS; PLANTS; SECONDARY METABOLISM;

EID: 84877977479     PISSN: 00320781     EISSN: 14719053     Source Type: Journal    
DOI: 10.1093/pcp/pct041     Document Type: Article

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