Analysis of codon usage diversity of bacterial genes with a self-organizing map (SOM): Characterization of horizontally transferred genes with emphasis on the E. coli O157 genome

Gene

Volumn 276, Issue 1-2, 2001, Pages 89-99

  Kanaya, Shigehiko ^a,b,c   Kinouchi, Makoto ^a,b   Abe, Takashi ^a,d   Kudo, Yoshihiro ^e   Yamada, Yuko ^e   Nishi, Tatsuya ^d   Mori, Hirotada ^b,c   Ikemura, Toshimichi ^f  

^a YAMAGATA UNIVERSITY   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^c NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

^d Xanagen Inc   (Japan)

^e JICHI MEDICAL UNIVERSITY   (Japan)

^f NATIONAL INSTITUTE OF GENETICS   (Japan)

Author keywords

Codon usage; E. coli O157; Horizontally transferred gene; Self organizing map

Indexed keywords

TRANSFER RNA;

ALGORITHM; ARTICLE; BACTERIAL GENE; CODON USAGE; DNA SEQUENCE; ESCHERICHIA COLI; GENE MAPPING; GENE NUMBER; GENE TRANSFER; GENETIC HETEROGENEITY; GENOME; NERVE CELL NETWORK; NONHUMAN; PRIORITY JOURNAL; RNA ANALYSIS; SPECIES DIFFERENCE;

ALGORITHMS; BASE COMPOSITION; CLASSIFICATION; CODON; ESCHERICHIA COLI O157; GC RICH SEQUENCE; GENE TRANSFER, HORIZONTAL; GENES, BACTERIAL; GENOME, BACTERIAL; NEURAL NETWORKS (COMPUTER); SPECIES SPECIFICITY; VARIATION (GENETICS);

EID: 0035802405     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0378-1119(01)00673-4     Document Type: Article

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