Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 27, 2004, Pages 10205-10210

  Hirai, Masami Yokota ^a,b   Yano, Mitsuru ^a   Goodenowe, Dayan B ^c   Kanaya, Shigehiko ^d   Kimura, Tomoko ^e   Awazuhara, Motoko ^a   Arita, Masanori ^f,g   Fujiwara, Toru ^b,f   Saito, Kazuki ^a,b  

^a CHIBA UNIVERSITY   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^c Phenomenome Discoveries Inc   (Canada)

^d NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

^e UNIVERSITY OF TOKYO   (Japan)

^f UNIVERSITY OF TOKYO   (Japan)

^g NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

NITROGEN; SULFUR;

ARABIDOPSIS; ARTICLE; CHEMICAL ANALYSIS; CONTROLLED STUDY; CYCLOTRON; DNA MICROARRAY; FOOD; GENE FUNCTION; GENE SEQUENCE; GENOME; NITROGEN METABOLISM; NONHUMAN; PLANT METABOLISM; PLANT NUTRITION; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; STRESS; WOOD;

ARABIDOPSIS; COMPUTATIONAL BIOLOGY; GLUCOSINOLATES; NITROGEN; SULFUR; TRANSCRIPTION, GENETIC;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 3042750616     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0403218101     Document Type: Article

References (30)

1. Arabidopsis Genome Initiative (2000) Nature 408, 796-815.
2. Yu, J., Hu, S., Wang, J., Wong, G. K., Li, S., Liu, B., Deng, Y., Dai, L., Zhou, Y., Zhang, X., et al. (2002) Science 296, 79-92.
3. Goff, S. A., Ricke, D., Lan, T. H., Presting, G., Wang, R., Dunn, M., Glazebrook, J., Sessions, A., Oeller, P., Varma, H., et al. (2002) Science 296, 92-100.
4. Tretheway, R. N., Krotzky, A. J. & Willmitzer, L. (1999) Curr. Opin. Plant Biol. 2, 83-85.
5. Fiehn, O., Kopka, J., Dörmann, P., Altmann, T., Trethewey, R. N. & Willmitzer, L. (2000) Nat. Biotechnol. 18, 1157-1161.
6. Roessner, U., Luedemann, A., Brust, D., Fiehn, O., Linke, T., Willmitzer, L. & Fernie, A. R. (2001) Plant Cell 13, 11-29.
7. Sumner, L. W., Mendes, P. & Dixon, R. A. (2003) Phytochemistry, 62, 817-836.
8. Goossens, A., Häkkinen, S. T., Laakso, I., Seppänen-Laakso T., Biondi, S., De Sutter, V., Lammertyn F., Nuutila A. M., Söderlund, H., Zabeau, M., et al. (2003) Proc. Natl. Acad. Sci. USA 100, 8595-8600.
9. Askenazi, M., Driggers, E. M., Holtzman, D. A., Norman, T. C., Iverson, S., Zimmer, D. P., Boers, M. E., Blomquist, P. R., Martinez, E. J., Monreal, A. W., et al. (2003) Nat. Biotechnol. 21, 150-156.
10. Aharoni, A., Ric De Vos, C. H., Verhoeven, H. A., Maliepaard, C. A., Kruppa, G., Bino, R. & Goodenowe, D. B. (2002) OMICS 6, 217-234.
11. Hawkesford, M. (2000) J. Exp. Bot. 51, 131-138.
12. Leustek, T., Martin, M. N., Bick, J.-A. & Davies, J. P. (2000) Annu. Rev. Plant Physiol. Plant Mol. Biol. 51, 141-165.
13. Saito, K. (2000) Curr. Opin. Plant Biol. 3, 188-195.
14. Mikkelsen, M. D., Petersen, B. L., Olsen, C. E. & Halkier, B. A. (2002) Amino Acids (Vienna) 22, 279-295.
15. Hirai, M. Y., Fujiwara, T., Chino, M. & Naito, S. (1995) Plant Cell Physiol. 36, 1331-1339.
16. Hirai, M. Y., Fujiwara, T., Awazuhara, M., Kimura, T., Noji, M. & Saito, K. (2003) Plant J. 33, 651-663.
17. Asamizu, E., Nakamura, Y., Sato, S. & Tabata, S. (2000) DNA Res. 7, 175-180.
18. Tusher, V. G., Tibshiriani, R. & Chu, G. (2001) Proc. Natl. Acad. Sci. USA 98, 5116-5121.
19. Kanaya, S., Kinouchi, M., Abe, T., Kudo, Y., Yamada, Y., Nishi, T., Mori, H. & Ikemura, T. (2001) Gene 276, 89-99.
20. Eaton, S. V. (1935) Bot. Gaz. 97, 68-100.
21. Grossman, A. & Takahashi, H. (2001) Annu. Rev. Plant Physiol. Plant Mol. Biol. 52, 163-210.
22. Kohonen, T. (1990) Proc. IEEE 78, 1464-1480.
23. Kohonen, T., Oja, E., Simula, O., Visa, A. & Kangas, J. (1996) Proc. IEEE 84, 1358-1384.
24. Abe, T., Kanaya, S., Kinouchi, M., Ichiba, Y., Kozuki, T. & Ikemura, T. (2003) Genome Res. 13, 693-702.
25. Blake-Kalff, M. M. A., Harrison, K. R., Hawkesford, M. J., Zhao, F. J. & McGrath, S. P. (1998) Plant Physiol. 118, 1337-1344.
26. Scheible, W.-R., González-Fontes, A., Lauerer, M., Müller-Röber, B., Caboche, M. & Stitt, M. (1997) Plant Cell 9, 783-798.
27. Stitt, M. (1999) Curr. Opin. Plant Biol. 2, 178-186.
28. Wang, R., Guegler, K., LaBrie, S. T. & Crawford, N. M. (2000) Plant Cell 12, 1491-1509.
29. Coruzzi, G. & Last, R. (2000) in Biochemistry and Molecular Biology of Plants, eds. Buchanan, B. B., Gruissem, W. & Jones, R. L. (Am. Soc. Plant Physiol., Rockville, MD), pp. 358-410.
30. Vernoux, T., Wilson, R. C., Seeley, K. A., Reichheld, J. P., Muroy, S., Brown, S., Maughan, S. C., Cobbett, C. S., Van Montagu, M., Inze, D., et al. (2000) Plant Cell 12, 97-109.