Intraspecfic variation in cold-temperature metabolic phenotypes of Arabidopsis lyrata ssp. petraea

Metabolomics

Volumn 5, Issue 1, 2009, Pages 138-149

  Davey, Matthew P ^a   Ian Woodward, F ^a   Paul Quick, W ^a  

^a UNIVERSITY OF SHEFFIELD   (United Kingdom)

Author keywords

Arabidopsis lyrata spp. petraea; Cold; Direct injection mass spectrometry; Environmental metabolomics; Metabolic phenotypes; Metabolite fingerprinting

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS LYRATA;

EID: 61849121750     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-008-0127-1     Document Type: Article

References (39)

1. Alonso-Blanco, C., Gomez-Mena, C., Llorente, F., Koornneef, M., Salinas, J., & Marti'nez-Zapater, J. M. (2005). Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis. Plant Physiology, 139, 1304-1312. doi: 10.1104/pp.105.068510.
2. Atkin, O. K., Bruhn, D., Hurry, V. M., & Tjoelker, M. G. (2005). The hot and the cold: Unravelling the variable response of plant respiration to temperature. Functional Plant Biology, 32, 87-105. doi: 10.1071/ FP03176.
3. Bleeckerl, A. B., & Patterson, S. E. (1997). Last exit: Senescence, abscission, and meristem arrest in Arabidopsis. The Plant Cell, 9, 1169-1179. doi: 10.1105/tpc.9.7.1169.
4. Clauss, M. J., & Koch, M. A. (2006). Poorly known relatives of Arabidopsis thaliana. Trends in Plant Science, 11, 449-459. doi: 10.1016/ j.tplants.2006.07.005.
5. Clauss, M. J., & Mitchell-Olds, T. (2006). Population genetic structure of Arabidopsis lyrata in Europe. Molecular Ecology, 15, 2753-2766.
6. Cook, D., Fowler, S., Fiehn, O., & Thomashaw, M. F. (2004). A prominent role for the CBF cold response pathway in configuring the low-temperature metabolome of Arabidopsis. Proceedings of the National Academy of Sciences of the United States of America, 101, 15243-15248. doi: 10.1073/pnas.0406069101.
7. Coruzzi, G. M. (2003). Primary N-assimilation into amino acids in Arabidopsis. In C. R. Somerville & E. M. Meyerowitz (Eds.), The Arabidopsis book (pp. 1-17). Maryland: American society of Plant Biologists.
8. Davey, M. P., Burrell, M. M., Woodward, F. I., & Quick, W. P. (2008). Population-specific metabolic phenotypes of Arabidopsis lyrata ssp. petraea. The New Phytologist, 177, 380-388.
9. Gray, G. R., & Heath, D. (2005). A global reorganization of the metabolome in Arabidopsis during cold acclimation is revealed by metabolic fingerprinting. Physiologia Plantarum, 124, 236-248. doi: 10.1111/j.1399-3054.2005.00507.x.
10. Guy, C. L., Huber, J. L. A., & Huber, S. C. (1992). Sucrose phosphate synthase and sucrose accumulation at low temperature. Plant Physiology, 100, 502-508.
11. Hannah, M. A., Wiese, D., Freund, S., Fiehn, O., Heyer, A. G., & Hincha, D. K. (2006). Natural genetic variation of freezing tolerance in Arabidopsis thaliana. Plant Physiology, 142, 98-112. doi: 10.1104/ pp.106.081141.
12. Jonsell, B., Kustås, K., & Nordal, I. (1995). Genetic variation in Arabis petraea, a disjunct species in northern Europe. Ecography, 18, 321-332. doi: 10.1111/j.1600-0587.1995.tb00135.x.
13. Kaplan, F., Kopka, J., Haskell, D. W., et al. (2004). Exploring the temperature-stress metabolome of Arabidopsis. Plant Physiology, 136, 4159-4168. doi: 10.1104/pp.104.052142.
14. Kaplan, F., Kopka, J., Sung, D. Y., et al. (2007). Transcript and metabolite profiling during cold acclimation of Arabidopsis reveals an intricate relationship of cold-regulated gene expression with modifications in metabolite content. The Plant Journal, 50, 967-981. doi: 10.1111/j.1365-313X.2007.03100.x.
15. Kilian, J., Whitehead, D., Horak, J., et al. (2007). The AtGenExpress global stress expression data set: Protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. The Plant Journal, 50, 347-363. doi: 10.1111/j.1365-313X.2007.03052.x.
16. Klotke, J., Kopka, J., Gatzke, N., & Heyer, A. G. (2004). Impact of soluble sugar concentrations on the acquisition of freezing tolerance in accessions of Arabidopsis thaliana with contrasting cold acclimation - evidence for a role of raffinose in cold acclimation. Plant Cell & Environment, 27, 1395-1404. doi: 10.1111/j.1365-3040.2004.01242.x.
17. Lam, H. M., Coschigano, K., Schultz, C., et al. (1995). Use of Arabidopsis mutants and genes to study amide amino acid biosynthesis. The Plant Cell, 7, 887-898.
18. Lam, H. M., Hsieh, M. H., & Coruzzi, G. (1998). Reciprocal regulation of distinct asparagine synthetase genes by light and metabolites in Arabidopsis thaliana. The Plant Journal, 16, 345-353. doi: 10.1046/j.1365-313x.1998.00302.x.
19. Lam, H. M., Peng, S. S. Y., & Coruzzi, G. M. (1994). Metabolic regulation of the gene encoding glutamine-dependent asparagine synthetase in Arabidopsis thaliana. Plant Physiology, 106, 1347-1357. doi: 10.1104/pp.106.4.1347.
20. Li, R. J., Hua, W., & Lu, Y. T. (2006). Arabidopsis cytosolic glutamine synthetase AtGLN1;1 is a potential substrate of AtCRK3 involved in leaf senescence. Biochemical and Biophysical Research Communications, 342, 119-126. doi: 10.1016/j.bbrc.2006.01.100.
21. Meyer, R. C., Steinfath, M., Lisec, J., et al. (2007). The metabolic signature related to high plant growth rate in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America, 104, 4759-4764. doi: 10.1073/pnas.0609709104.
22. Miesak, B. H., & Coruzzi, G. M. (2002). Molecular and physiological analysis of Arabidopsis mutants defective in cytosolic or chloroplastic aspartate aminotransferase. Plant Physiology, 129, 650-660. doi: 10.1104/ pp.005090.
23. Oliveira, I. C., & Coruzzi, G. M. (1999). Carbon and amino acids reciprocally modulate the expression of glutamine synthetase in Arabidopsis. Plant Physiology, 121, 301-309. doi: 10.1104/pp.121.1.301.
24. Peterman, T. K., & Goodman, H. M. (1991). The glutamine synthetase gene family of Arabidopsis thaliana: Light-regulation and differential expression in leaves, roots and seeds. Molecular & General Genetics, 230, 145-154. doi: 10.1007/BF00290662.
25. Sackville Hamilton, N. R., Skøt, L., Chorlton, K. H., Thomas, I. D., & Mizen, S. (2002). Molecular genecology of temperature response in Lolium perenne: 1 preliminary analysis to reduce false positives. Molecular Ecology, 11, 1855-1863. doi: 10.1046/j.1365-294X.2002.01567.x.
26. Sagisaka, S., & Araki, T. (1983). Amino acid pools in perennial plants at the wintering stage and at the beginning of growth. Plant & Cell Physiology, 24, 479-494.
27. Skøt, L., Sackville Hamilton, N. R., Mizen, S., Chorlton, K. H., & Thomas, I. D. (2002). Molecular genecology of temperature response in Lolium perenne: 2 Association of AFLP markers with ecogeography. Molecular Ecology, 11, 1865-1876. doi: 10.1046/j.1365-294X.2002.01568.x.
28. Smirnoff, N. (1998). Plant resistance to environmental stress. Current Opinion in Biotechnology, 9, 11-29. doi: 10.1016/S0958-1669(98)80118-3.
29. Stitt, M., & Hurry, V. (2002). A plant for all seasons: Alterations in photosynthetic carbon metabolism during cold acclimation in Arabidopsis. Current Opinion in Plant Biology, 5, 199-206. doi: 10.1016/ S1369-5266(02)00258-3.
30. Strand, Å., Hurry, V., Henkes, S., et al. (1999). Acclimation of Arabidopsis leaves developing at low temperatures increasing cytoplasmic volume accompanies increased activities of enzymes in the Calvin cycle and in the sucrose-biosynthesis pathway. The Plant Journal, 12, 605-614. doi: 10.1046/j.1365-313X.1997.00605.x.
31. Suzuki, A., & Knaff, D. B. (2005). Glutamate synthase: Structural, mechanistic and regulatory properties and role in the amino acid metabolism. Photosynthesis Research, 83, 191-217. doi: 10.1007/ s11120-004-3478-0.
32. Thomas, C. D., Cameron, A., Green, R. E., et al. (2004). Extinction risk from climate change. Nature, 427, 145-148. doi: 10.1038/nature02121.
33. Thomashow, M. F. (1999). Plant cold acclimation: Freezing tolerance genes and regulatory mechanisms. Annual Review of Plant Physiology and Molecular Biololgy, 50, 571-599. doi: 10.1146/annurev.arplant.50.1.571.
34. Usadel, B., Bläsing, O. E., Gibon, Y., et al. (2008). Multilevel genomic analysis of the response of transcripts enzyme activities and metabolites in Arabidopsis rosettes to a progressive decrease of temperature in the non-freezing range. Plant Cell & Environment, 31, 518-547. doi: 10.1111/j.1365-3040.2007.01763.x.
35. Vergeer, P., van den Berg, L. L. J., Bulling, M. T., Ashmore, M. R., & Kunin, W. E. (2008). Geographical variation in the response to nitrogen deposition in Arabidopsis lyrata petraea. The New Phytologist, 179(1), 129-141. doi: 10.1111/j.1469-8137.2008.02445.x.
36. Vinocur, B., & Altman, A. (2005). Recent advances in engineering plant tolerance to abiotic stress: Achievements and limitations. Current Opinion in Biotechnology, 16, 123-132. doi: 10.1016/j.copbio.2005.02.001.
37. Walther, G. R., Berger, S., & Sykes, M. T. (2005). An ecological 'footprint' of climate change. Proceedings of the Royal Society of London. Series B. Biological Sciences, 272, 1427-1432. doi: 10.1098/ rspb.2005.3119.
38. Walther, G. R., Post, E., Convey, P., et al. (2002). Ecological responses to recent climate change. Nature, 416, 389-395. doi: 10.1038/ 416389a.
39. Zhen, Y., & Ungerer, M. C. (2008). Clinal variation in freezing tolerance among natural accessions of Arabidopsis thaliana. The New Phytologist, 177, 419-427.