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Volumn 43, Issue 1, 2012, Pages 69-80

Scientific perspectivism: A philosopher of science's response to the challenge of big data biology

Author keywords

Big data biology; Carl Woese; Data driven research; Engineering approach to life; Scientific perspectivism

Indexed keywords

ARTICLE; BIOLOGICAL MODEL; BIOLOGY; ENGINEERING; HUMAN; INFORMATION SCIENCE; PHILOSOPHY; SCIENCE; SYNTHETIC BIOLOGY; SYSTEMS BIOLOGY;

EID: 84856658110     PISSN: 13698486     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.shpsc.2011.10.007     Document Type: Article
Times cited : (105)

References (102)
  • 1
    • 0035136438 scopus 로고    scopus 로고
    • Bioinformatics and discovery: Induction beckons again
    • Allen J.F. Bioinformatics and discovery: Induction beckons again. BioEssays 2001, 23:104-107.
    • (2001) BioEssays , vol.23 , pp. 104-107
    • Allen, J.F.1
  • 2
    • 0345731976 scopus 로고    scopus 로고
    • Hypothesis, induction and background knowledge. Data do not speak for themselves
    • Allen J.F. Hypothesis, induction and background knowledge. Data do not speak for themselves. BioEssays 2001, 23:861-862.
    • (2001) BioEssays , vol.23 , pp. 861-862
    • Allen, J.F.1
  • 3
    • 0034905753 scopus 로고    scopus 로고
    • In silico veritas
    • Allen J.F. In silico veritas. EMBO Reports 2001, 2:542-544.
    • (2001) EMBO Reports , vol.2 , pp. 542-544
    • Allen, J.F.1
  • 4
    • 79954567876 scopus 로고    scopus 로고
    • Nature without essence
    • Almog J. Nature without essence. Journal of Philosophy 2010, 107:360-383.
    • (2010) Journal of Philosophy , vol.107 , pp. 360-383
    • Almog, J.1
  • 6
    • 68949109178 scopus 로고    scopus 로고
    • The end of theory: the data deluge makes the scientific method obsolete.
    • Wired Magazine 16.07 (June 23, 2008).
    • Anderson, C. (2008). The end of theory: the data deluge makes the scientific method obsolete. Wired Magazine 16.07 (June 23, 2008). http://www.wired.com.
    • (2008)
    • Anderson, C.1
  • 7
    • 84856670722 scopus 로고    scopus 로고
    • The data deluge
    • Anonymous
    • Anonymous The data deluge. The Economist (London) 2010.
    • (2010) The Economist (London)
  • 8
    • 77952488975 scopus 로고    scopus 로고
    • Big science and big data in biology: From the International Geophysical Year through the International Biological Program to the Long Term Ecological Research (LTER) Network, 1957-Present
    • Aronova E., Baker K., Oreskes N. Big science and big data in biology: From the International Geophysical Year through the International Biological Program to the Long Term Ecological Research (LTER) Network, 1957-Present. Historical Studies in the Natural Sciences 2010, 40:183-224.
    • (2010) Historical Studies in the Natural Sciences , vol.40 , pp. 183-224
    • Aronova, E.1    Baker, K.2    Oreskes, N.3
  • 10
    • 33748846802 scopus 로고    scopus 로고
    • Robert Rosen's work and complex systems biology
    • Baianu I.C. Robert Rosen's work and complex systems biology. Axiomathes 2006, 16:25-34.
    • (2006) Axiomathes , vol.16 , pp. 25-34
    • Baianu, I.C.1
  • 11
    • 85133426777 scopus 로고    scopus 로고
    • Elsevier, Amsterdam, F.C. Boogerd, F.J. Bruggeman, J.-H.S. Hofmeyr, H.V. Westerhoff (Eds.)
    • Systems biology: Philosophical foundations 2007, Elsevier, Amsterdam. F.C. Boogerd, F.J. Bruggeman, J.-H.S. Hofmeyr, H.V. Westerhoff (Eds.).
    • (2007) Systems biology: Philosophical foundations
  • 12
    • 84856670723 scopus 로고    scopus 로고
    • BISTI Consortium. (2000). NIH working definition of bioinformatics and computational biology.
    • BISTI Consortium. (2000). NIH working definition of bioinformatics and computational biology. http://www.bisti.nih.gov.
  • 13
    • 84856679613 scopus 로고    scopus 로고
    • Research data: who will share what, with whom, when, and why? Working Paper No. 161, German Data Forum (RatSWD).
    • Borgman, C. L. (2010). Research data: who will share what, with whom, when, and why? Working Paper No. 161, German Data Forum (RatSWD). http://www.germandataforum.de.
    • (2010)
    • Borgman, C.L.1
  • 14
    • 5044239903 scopus 로고    scopus 로고
    • A partnership between biology and engineering
    • Brent R. A partnership between biology and engineering. Nature Biotechnology 2004, 22:1211-1214.
    • (2004) Nature Biotechnology , vol.22 , pp. 1211-1214
    • Brent, R.1
  • 16
    • 26844546646 scopus 로고    scopus 로고
    • Gestalt experiments and inductive observations: Konrad Lorenz's early epistemological writings and the methods of classical ethology
    • Brigandt I. Gestalt experiments and inductive observations: Konrad Lorenz's early epistemological writings and the methods of classical ethology. Evolution & Cognition 2003, 9:157-170.
    • (2003) Evolution & Cognition , vol.9 , pp. 157-170
    • Brigandt, I.1
  • 19
    • 23344448978 scopus 로고    scopus 로고
    • Again, what the philosophy of biology is not
    • Callebaut W. Again, what the philosophy of biology is not. Acta Biotheoretica 2005, 53:93-122.
    • (2005) Acta Biotheoretica , vol.53 , pp. 93-122
    • Callebaut, W.1
  • 20
    • 70450245397 scopus 로고    scopus 로고
    • Multiscale phenomena in biology and scientific perspectivism
    • AIP (American Institute of Physics) Conference Proceedings, Melville, NY, R.M. Sinclair, K.M. Stiefel (Eds.)
    • Callebaut W. Multiscale phenomena in biology and scientific perspectivism. Multiscale phenomena in biology 2009, 57-69. AIP (American Institute of Physics) Conference Proceedings, Melville, NY. R.M. Sinclair, K.M. Stiefel (Eds.).
    • (2009) Multiscale phenomena in biology , pp. 57-69
    • Callebaut, W.1
  • 21
    • 77953560200 scopus 로고    scopus 로고
    • The dialectics of dis/unity in the evolutionary synthesis and its extensions
    • MIT Press, Cambridge, MA, M. Pigliucci, G.B. Müller (Eds.)
    • Callebaut W. The dialectics of dis/unity in the evolutionary synthesis and its extensions. Evolution: the extended synthesis 2010, 443-481. MIT Press, Cambridge, MA. M. Pigliucci, G.B. Müller (Eds.).
    • (2010) Evolution: the extended synthesis , pp. 443-481
    • Callebaut, W.1
  • 22
    • 84856627969 scopus 로고    scopus 로고
    • Epistemología naturalizada: Una visión panorámica
    • Siglo XXI Editores en coedición con la Asociación Filosófica de México, Mexico D.F. J. Labastida, V. Aréchiga (Eds.)
    • Callebaut W., Hernández Chávez P. Epistemología naturalizada: Una visión panorámica. Identidad y Diferencia, Vol. 3, La Filosofía y la Ciencia 2010, 138-155. Siglo XXI Editores en coedición con la Asociación Filosófica de México, Mexico D.F. J. Labastida, V. Aréchiga (Eds.).
    • (2010) Identidad y Diferencia, Vol. 3, La Filosofía y la Ciencia , pp. 138-155
    • Callebaut, W.1    Hernández Chávez, P.2
  • 23
    • 34447573185 scopus 로고    scopus 로고
    • The organismic systems approach: EvoDevo and the streamlining of the naturalistic agenda
    • MIT Press, Cambridge, MA, R. Sansom, R.N. Brandon (Eds.)
    • Callebaut W., Müller G.B., Newman S.A. The organismic systems approach: EvoDevo and the streamlining of the naturalistic agenda. Integrating evolution and development: From theory to practice 2007, 25-92. MIT Press, Cambridge, MA. R. Sansom, R.N. Brandon (Eds.).
    • (2007) Integrating evolution and development: From theory to practice , pp. 25-92
    • Callebaut, W.1    Müller, G.B.2    Newman, S.A.3
  • 24
    • 77954421322 scopus 로고    scopus 로고
    • Synthetic biology: Constructing nature?
    • Calvert J. Synthetic biology: Constructing nature?. Sociological Review 2010, 58:95-112.
    • (2010) Sociological Review , vol.58 , pp. 95-112
    • Calvert, J.1
  • 25
    • 84856670724 scopus 로고
    • The Sapir-Whorf hypothesis. Available from
    • Chandler, C. (1994). The Sapir-Whorf hypothesis. Available from http://www.aber.ac.uk/media/Documents/short/whorf.html.
    • (1994)
    • Chandler, C.1
  • 26
    • 0031690029 scopus 로고    scopus 로고
    • Balancing the biocomplexity of the planet's living systems: A twenty-first century task for science
    • Colwell R. Balancing the biocomplexity of the planet's living systems: A twenty-first century task for science. BioScience 1998, 48:786-787.
    • (1998) BioScience , vol.48 , pp. 786-787
    • Colwell, R.1
  • 29
    • 67649667312 scopus 로고    scopus 로고
    • Natural selection and immortality
    • Danchin A. Natural selection and immortality. Biogerontology 2009, 10:503-516.
    • (2009) Biogerontology , vol.10 , pp. 503-516
    • Danchin, A.1
  • 30
    • 51049084395 scopus 로고    scopus 로고
    • Synthetic biology: discovering new worlds and new words
    • De Lorenzo V., Danchin A. Synthetic biology: discovering new worlds and new words. EMBO Reports 2008, 90:822-827.
    • (2008) EMBO Reports , vol.90 , pp. 822-827
    • De Lorenzo, V.1    Danchin, A.2
  • 32
    • 84856668876 scopus 로고    scopus 로고
    • University of Pittsburgh Press, Pittsburgh, PA, H.W. de Regt, S. Leonelli, K. Eigner (Eds.)
    • Scientific understanding: Philosophical perspectives 2009, University of Pittsburgh Press, Pittsburgh, PA. H.W. de Regt, S. Leonelli, K. Eigner (Eds.).
    • (2009) Scientific understanding: Philosophical perspectives
  • 33
    • 1542705163 scopus 로고
    • Reflections on "fundamentality and complexity"
    • Reidel, Dordrecht, C.P. Enz, J. Mehra (Eds.)
    • Dresden M. Reflections on "fundamentality and complexity" Physical reality and mathematical description 1974, 133-166. Reidel, Dordrecht. C.P. Enz, J. Mehra (Eds.).
    • (1974) Physical reality and mathematical description , pp. 133-166
    • Dresden, M.1
  • 34
    • 0039528802 scopus 로고    scopus 로고
    • Fundamentality and numerical scales: Diversity and the structure of physics
    • Dresden M. Fundamentality and numerical scales: Diversity and the structure of physics. American Journal of Physics 1998, 66:468-482.
    • (1998) American Journal of Physics , vol.66 , pp. 468-482
    • Dresden, M.1
  • 35
    • 84984775970 scopus 로고    scopus 로고
    • Distilling meaning from data
    • Frankel F., Reid R. Distilling meaning from data. Nature 2008, 455:30.
    • (2008) Nature , vol.455 , pp. 30
    • Frankel, F.1    Reid, R.2
  • 37
    • 0041760050 scopus 로고    scopus 로고
    • Governing science before it governs us
    • Fuller S. Governing science before it governs us. Interdisciplinary Science Reviews 2000, 25:95-100.
    • (2000) Interdisciplinary Science Reviews , vol.25 , pp. 95-100
    • Fuller, S.1
  • 38
    • 84856656741 scopus 로고    scopus 로고
    • Philosophy of science in an age of neo-Darwinian apologetics
    • Fuller S. Philosophy of science in an age of neo-Darwinian apologetics. Ludus Vitalis 2009, 17:247-257.
    • (2009) Ludus Vitalis , vol.17 , pp. 247-257
    • Fuller, S.1
  • 41
    • 0004207959 scopus 로고    scopus 로고
    • University of Chicago Press, Chicago
    • Giere R.N. Science without laws 1999, University of Chicago Press, Chicago.
    • (1999) Science without laws
    • Giere, R.N.1
  • 43
    • 34447578178 scopus 로고    scopus 로고
    • Modest evolutionary naturalism
    • Giere R.N. Modest evolutionary naturalism. Biological Theory 2006, 1:52-60.
    • (2006) Biological Theory , vol.1 , pp. 52-60
    • Giere, R.N.1
  • 44
    • 84855533602 scopus 로고    scopus 로고
    • Scientific representations and empiricist structuralism. Review of van Fraassen (2008)
    • Giere R.N. Scientific representations and empiricist structuralism. Review of van Fraassen (2008). Philosophy of Science 2009, 76:101-111.
    • (2009) Philosophy of Science , vol.76 , pp. 101-111
    • Giere, R.N.1
  • 45
    • 79960510071 scopus 로고    scopus 로고
    • Bringing the night sky closer: Discoveries in the data deluge
    • Microsoft Research, Redmond, WA, T. Hey (Ed.)
    • Goodman A.A., Wong C.F. Bringing the night sky closer: Discoveries in the data deluge. The fourth paradigm 2009, 39-44. Microsoft Research, Redmond, WA. T. Hey (Ed.).
    • (2009) The fourth paradigm , pp. 39-44
    • Goodman, A.A.1    Wong, C.F.2
  • 47
    • 0010232262 scopus 로고    scopus 로고
    • Development, culture, and the units of inheritance
    • Griesemer J. Development, culture, and the units of inheritance. Philosophy of Science 2000, 67:S348-S368.
    • (2000) Philosophy of Science , vol.67
    • Griesemer, J.1
  • 49
    • 84944616710 scopus 로고    scopus 로고
    • Philosophy and tinkering
    • Griesemer J. Philosophy and tinkering. Biology and Philosophy 2011, 26:269-279.
    • (2011) Biology and Philosophy , vol.26 , pp. 269-279
    • Griesemer, J.1
  • 51
    • 0345656792 scopus 로고
    • Cambridge University Press, Cambridge, J. Hilgevoord (Ed.)
    • Physics and our view of the world 1994, Cambridge University Press, Cambridge. J. Hilgevoord (Ed.).
    • (1994) Physics and our view of the world
  • 52
    • 0034614637 scopus 로고    scopus 로고
    • The hallmarks of cancer
    • Hanahan D., Weinberg R.A. The hallmarks of cancer. Cell 2000, 100:57-70.
    • (2000) Cell , vol.100 , pp. 57-70
    • Hanahan, D.1    Weinberg, R.A.2
  • 54
    • 0010425072 scopus 로고
    • Simulating the growth of cellular forms
    • Hogeweg P. Simulating the growth of cellular forms. Simulation 1978, 31:90-96.
    • (1978) Simulation , vol.31 , pp. 90-96
    • Hogeweg, P.1
  • 55
    • 5044229321 scopus 로고    scopus 로고
    • The impact of systems approaches on biological problems in drug discovery
    • Hood L., Perlmutter R.M. The impact of systems approaches on biological problems in drug discovery. Nature Biotechnology 2004, 22:1215-1217.
    • (2004) Nature Biotechnology , vol.22 , pp. 1215-1217
    • Hood, L.1    Perlmutter, R.M.2
  • 59
    • 0033860985 scopus 로고    scopus 로고
    • Should the neuroscience community make a paradigm shift in sharing primary data?
    • Koslow S.H. Should the neuroscience community make a paradigm shift in sharing primary data?. Nature Neuroscience 2000, 3:863-865.
    • (2000) Nature Neuroscience , vol.3 , pp. 863-865
    • Koslow, S.H.1
  • 60
    • 84919960902 scopus 로고    scopus 로고
    • Humana Press, Totowa, NJ, S. Krawetz (Ed.)
    • Bioinformatics for systems biology 2009, Humana Press, Totowa, NJ. 2nd ed. S. Krawetz (Ed.).
    • (2009) Bioinformatics for systems biology
  • 61
    • 84882460515 scopus 로고    scopus 로고
    • Data without models merging with models without data
    • Amsterdam, Elsevier, F.C. Boogerd (Ed.)
    • Krohs U., Callebaut W. Data without models merging with models without data. Systems biology: Philosophical foundations 2007, 181-213. Amsterdam, Elsevier. F.C. Boogerd (Ed.).
    • (2007) Systems biology: Philosophical foundations , pp. 181-213
    • Krohs, U.1    Callebaut, W.2
  • 62
    • 0042475205 scopus 로고    scopus 로고
    • Toward a formalization of emergence
    • Kubík A. Toward a formalization of emergence. Artificial Life 2003, 9:41-65.
    • (2003) Artificial Life , vol.9 , pp. 41-65
    • Kubík, A.1
  • 64
    • 85131599827 scopus 로고    scopus 로고
    • Bio-ontologies as tools for integration in biology
    • Leonelli S. Bio-ontologies as tools for integration in biology. Biological Theory 2008, 3:7-11.
    • (2008) Biological Theory , vol.3 , pp. 7-11
    • Leonelli, S.1
  • 65
    • 77249170839 scopus 로고    scopus 로고
    • On the locality of data and claims about phenomena
    • Leonelli S. On the locality of data and claims about phenomena. Philosophy of Science 2009, 76:5-14.
    • (2009) Philosophy of Science , vol.76 , pp. 5-14
    • Leonelli, S.1
  • 66
    • 80053460051 scopus 로고    scopus 로고
    • The impure nature of biological knowledge
    • Pittsburgh University Press, Pittsburgh, H. de Regt (Ed.)
    • Leonelli S. The impure nature of biological knowledge. Scientific understanding: a philosophical perspective 2009, 189-209. Pittsburgh University Press, Pittsburgh. H. de Regt (Ed.).
    • (2009) Scientific understanding: a philosophical perspective , pp. 189-209
    • Leonelli, S.1
  • 70
    • 0347885545 scopus 로고
    • The fashionable fallacy of dispensing with description
    • Lorenz K.Z. The fashionable fallacy of dispensing with description. Naturwissenschaften 1973, 60:1-9.
    • (1973) Naturwissenschaften , vol.60 , pp. 1-9
    • Lorenz, K.Z.1
  • 72
    • 0011400875 scopus 로고
    • Thematic analysis in science. Notes on Holton's concept
    • Merton R.K. Thematic analysis in science. Notes on Holton's concept. Science 1975, 188:335-338.
    • (1975) Science , vol.188 , pp. 335-338
    • Merton, R.K.1
  • 73
    • 34249002501 scopus 로고    scopus 로고
    • Beyond the flat earth perspective in systems biology
    • Mesarovic M.D., Sreenath S.N. Beyond the flat earth perspective in systems biology. Biological Theory 2006, 1:33-34.
    • (2006) Biological Theory , vol.1 , pp. 33-34
    • Mesarovic, M.D.1    Sreenath, S.N.2
  • 74
    • 21044443402 scopus 로고    scopus 로고
    • Search for organising principles: Understanding in systems biology
    • Mesarovic M.D., Sreenath S.N., Keene J.D. Search for organising principles: Understanding in systems biology. Systems Biology 2004, 1:19-27.
    • (2004) Systems Biology , vol.1 , pp. 19-27
    • Mesarovic, M.D.1    Sreenath, S.N.2    Keene, J.D.3
  • 77
    • 70349658837 scopus 로고    scopus 로고
    • The coordinates of truth
    • Nabel G.J. The coordinates of truth. Science 2009, 326:53-54.
    • (2009) Science , vol.326 , pp. 53-54
    • Nabel, G.J.1
  • 78
  • 80
    • 84923400776 scopus 로고    scopus 로고
    • Just so genome stories: What does my neighbor tell me?
    • Noria S., Danchin A. Just so genome stories: What does my neighbor tell me?. International Congress Series 2002, 1246:3-13.
    • (2002) International Congress Series , vol.1246 , pp. 3-13
    • Noria, S.1    Danchin, A.2
  • 81
    • 79954628361 scopus 로고    scopus 로고
    • Making knowledge in synthetic biology: Design meets kludge
    • O'Malley M.A. Making knowledge in synthetic biology: Design meets kludge. Biological Theory 2009, 4:378-389.
    • (2009) Biological Theory , vol.4 , pp. 378-389
    • O'Malley, M.A.1
  • 84
    • 0002590912 scopus 로고
    • Unity of science as a working hypothesis
    • University of Minnesota Press, Minneapolis, H. Feigl (Ed.)
    • Oppenheim P., Putnam H. Unity of science as a working hypothesis. Minnesota studies in the philosophy of science 1958, 3-36. University of Minnesota Press, Minneapolis. H. Feigl (Ed.).
    • (1958) Minnesota studies in the philosophy of science , pp. 3-36
    • Oppenheim, P.1    Putnam, H.2
  • 92
    • 0035984911 scopus 로고    scopus 로고
    • Search and retrieve. Large-scale data generation is becoming increasingly important in biological research. But how good are the tools to make sense of the data?
    • Valencia A. Search and retrieve. Large-scale data generation is becoming increasingly important in biological research. But how good are the tools to make sense of the data?. EMBO Reports 2002, 3:396-400.
    • (2002) EMBO Reports , vol.3 , pp. 396-400
    • Valencia, A.1
  • 95
    • 85048941584 scopus 로고
    • An essay on the relativity of categories
    • Von Bertalanffy L. An essay on the relativity of categories. Philosophy of Science 1955, 22:243-263.
    • (1955) Philosophy of Science , vol.22 , pp. 243-263
    • Von Bertalanffy, L.1
  • 97
    • 0032549085 scopus 로고    scopus 로고
    • Complexity matters
    • Wagner G.P. Complexity matters. Science 1998, 279:1158-1159.
    • (1998) Science , vol.279 , pp. 1158-1159
    • Wagner, G.P.1
  • 98
    • 77950448106 scopus 로고    scopus 로고
    • Point: Hypotheses first
    • Weinberg R.A. Point: Hypotheses first. Nature 2010, 464:678.
    • (2010) Nature , vol.464 , pp. 678
    • Weinberg, R.A.1
  • 99
    • 84856646184 scopus 로고    scopus 로고
    • I have seen the paradigm shift, and it is us
    • Microsoft Research, Redmond, WA, T. Hey (Ed.)
    • Wilbanks J. I have seen the paradigm shift, and it is us. The fourth paradigm 2009, 209-214. Microsoft Research, Redmond, WA. T. Hey (Ed.).
    • (2009) The fourth paradigm , pp. 209-214
    • Wilbanks, J.1


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