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Volumn 18, Issue , 2007, Pages 75-95

The golm metabolome database: A database for GC-MS based metabolite profiling

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EID: 34548841428     PISSN: 16102096     EISSN: 16106970     Source Type: Book Series    
DOI: 10.1007/4735_2007_0229     Document Type: Article
Times cited : (117)

References (65)
  • 2
    • 16544365827 scopus 로고    scopus 로고
    • Computational resources for metabolomics
    • Arita M (2004) Computational resources for metabolomics. Briefings Funct Genomics Proteomics 3:84-93
    • (2004) Briefings Funct Genomics Proteomics , vol.3 , pp. 84-93
    • Arita, M.1
  • 6
    • 33646241042 scopus 로고    scopus 로고
    • An empirical analysis of research topic query processing. J Chem Inf Model
    • Ben Wagner A (2006) SciFinder Scholar 2006: An empirical analysis of research topic query processing. J Chem Inf Model 46:767-774
    • (2006) SciFinder Scholar 2006 , vol.46 , pp. 767-774
    • Ben Wagner, A.1
  • 10
    • 14844332708 scopus 로고    scopus 로고
    • Pathway information for systems biology
    • Cary MP, Bader GD, Sander C (2005) Pathway information for systems biology. FEBS Letters 579:1815-1820
    • (2005) FEBS Letters , vol.579 , pp. 1815-1820
    • Cary, M.P.1    Bader, G.D.2    Sander, C.3
  • 11
  • 12
    • 24044522270 scopus 로고    scopus 로고
    • BioMart and BioConductor: A powerful link between biological databases and microarray data analysis
    • Durinck S, Moreau Y, Kasprzyk A, Davis S, De Moor B, Brazma A, Huber W (2005) BioMart and BioConductor: A powerful link between biological databases and microarray data analysis. Bioinformatics 21:3439-3440
    • (2005) Bioinformatics , vol.21 , pp. 3439-3440
    • Durinck, S.1    Moreau, Y.2    Kasprzyk, A.3    Davis, S.4    De Moor, B.5    Brazma, A.6    Huber, W.7
  • 13
    • 38949205718 scopus 로고    scopus 로고
    • Non-supervised construction and application of mass spectral and retention time index libraries from time-of-flight GC-MS metabolite profiles
    • Weckwerth W ed, Humana Press, Totowa, pp
    • Erban A, Schauer N, Fernie AR, Kopka J (2007) Non-supervised construction and application of mass spectral and retention time index libraries from time-of-flight GC-MS metabolite profiles. In: Weckwerth W (ed) Metabolomics: Methods and protocols. Humana Press, Totowa, pp 19-38
    • (2007) Metabolomics: Methods and protocols , pp. 19-38
    • Erban, A.1    Schauer, N.2    Fernie, A.R.3    Kopka, J.4
  • 14
    • 0036007687 scopus 로고    scopus 로고
    • Metabolomics - the link between genotypes and phenotypes
    • Fiehn O (2002) Metabolomics - the link between genotypes and phenotypes. Plant Mol Biol 48:155-171
    • (2002) Plant Mol Biol , vol.48 , pp. 155-171
    • Fiehn, O.1
  • 15
    • 26444491700 scopus 로고    scopus 로고
    • Automatic annotation of metabolomic mass spectra by integrating experimental metadata
    • Fiehn O, Wohlgemuth G, Scholz M (2005) Automatic annotation of metabolomic mass spectra by integrating experimental metadata. Proc Lect Notes Bioinformatics 3615:224-239
    • (2005) Proc Lect Notes Bioinformatics , vol.3615 , pp. 224-239
    • Fiehn, O.1    Wohlgemuth, G.2    Scholz, M.3
  • 16
    • 13444259868 scopus 로고    scopus 로고
    • The molecular database collection: 2005 update
    • Galperin MY (2005) The molecular database collection: 2005 update. Nucleic Acids Res 33:D5-D24
    • (2005) Nucleic Acids Res , vol.33
    • Galperin, M.Y.1
  • 17
    • 0032991929 scopus 로고    scopus 로고
    • Deconvolution gas chromatography mass spectrometry of urinary organic acids - potential for pattern recognition and automated identification of metabolic disorders
    • Halket JM, Przyborowska A, Stein SE, Mallard WG, Down S, Chalmers RA (1999) Deconvolution gas chromatography mass spectrometry of urinary organic acids - potential for pattern recognition and automated identification of metabolic disorders. Rapid Commun Mass Spectrom 13:279-284
    • (1999) Rapid Commun Mass Spectrom , vol.13 , pp. 279-284
    • Halket, J.M.1    Przyborowska, A.2    Stein, S.E.3    Mallard, W.G.4    Down, S.5    Chalmers, R.A.6
  • 20
    • 33645241830 scopus 로고    scopus 로고
    • VANTED: A system for advanced data analysis and visualization in the context of biological networks
    • Junker BH, Klukas C, Schreiber F (2006) VANTED: A system for advanced data analysis and visualization in the context of biological networks. BMC Bioinformatics 7:109
    • (2006) BMC Bioinformatics , vol.7 , pp. 109
    • Junker, B.H.1    Klukas, C.2    Schreiber, F.3
  • 22
    • 0030921594 scopus 로고    scopus 로고
    • A database for post-genome analysis
    • Kanehisa M (1997) A database for post-genome analysis. Trends Genet 13:375-376
    • (1997) Trends Genet , vol.13 , pp. 375-376
    • Kanehisa, M.1
  • 23
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes
    • Kanehisa M, Goto S (2000) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 28:27-30
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 26
    • 33644963733 scopus 로고    scopus 로고
    • Kenny LC, Dunn WB, Ellis DI, Myers J, Baker PN and the GOPEC Consortium, Kell DB (2005) Novel biomarkers for pre-eclamsia detected using metabolomics and machine learning. Metabolomics 1:227-234
    • Kenny LC, Dunn WB, Ellis DI, Myers J, Baker PN and the GOPEC Consortium, Kell DB (2005) Novel biomarkers for pre-eclamsia detected using metabolomics and machine learning. Metabolomics 1:227-234
  • 28
    • 33646754900 scopus 로고    scopus 로고
    • Metabolomic database annotations via query of elemental compositions: Mass accuracy is insufficient even at less than 1 ppm
    • Kind T, Fiehn O (2006) Metabolomic database annotations via query of elemental compositions: Mass accuracy is insufficient even at less than 1 ppm. BMC Bioinformatics 7:234
    • (2006) BMC Bioinformatics , vol.7 , pp. 234
    • Kind, T.1    Fiehn, O.2
  • 29
    • 33744525340 scopus 로고    scopus 로고
    • Current challenges and developments in GC-MS based metabolite profiling technology
    • Kopka J (2006a) Current challenges and developments in GC-MS based metabolite profiling technology. J Biotechnol 124:312-322
    • (2006) J Biotechnol , vol.124 , pp. 312-322
    • Kopka, J.1
  • 30
    • 85015214998 scopus 로고    scopus 로고
    • Kopka J (2006b) Gas chromatography mass spectrometry. In: Nagata T, Lörz H, Widholm JM (eds) Biotechnology in agriculture and forestry 57: Saito K, Dixon RA, Willmitzer L (eds) Plant metabolomics. Springer-Verlag: Berlin Heidelberg New York, pp 3-20
    • Kopka J (2006b) Gas chromatography mass spectrometry. In: Nagata T, Lörz H, Widholm JM (eds) Biotechnology in agriculture and forestry Vol 57: Saito K, Dixon RA, Willmitzer L (eds) Plant metabolomics. Springer-Verlag: Berlin Heidelberg New York, pp 3-20
  • 31
    • 4043063503 scopus 로고    scopus 로고
    • Metabolite profiling in plant biology: Platforms and destinations
    • Kopka J, Fernie AF, Weckwerth W, Gibon Y, Stitt M (2004) Metabolite profiling in plant biology: Platforms and destinations. Genome Biol 5:109-117
    • (2004) Genome Biol , vol.5 , pp. 109-117
    • Kopka, J.1    Fernie, A.F.2    Weckwerth, W.3    Gibon, Y.4    Stitt, M.5
  • 33
    • 34548860154 scopus 로고    scopus 로고
    • Kremsky J (2005) PubChem versus CAS. Chem Eng News 83:6
    • Kremsky J (2005) PubChem versus CAS. Chem Eng News 83:6
  • 35
    • 33745433792 scopus 로고    scopus 로고
    • Putative regulatory sites unreveled by network-embedded thermodynamics analysis of metabolome data
    • doi:10.1038/msb4100074 2006
    • Kümmel A, Panke S, Heinemann M (2006) Putative regulatory sites unreveled by network-embedded thermodynamics analysis of metabolome data. Mol Syst Biol 2, (doi:10.1038/msb4100074 2006)
    • (2006) Mol Syst Biol , pp. 2
    • Kümmel, A.1    Panke, S.2    Heinemann, M.3
  • 37
    • 34548845923 scopus 로고    scopus 로고
    • Mehrotra B, Mendes P (2006) Bioinformatics: Approaches to integrate metabolomics and other systems biology data. In: Nagata T, Lörz H, Widholm JM (eds) Biotechnology in agriculture and forestry 57: Saito K, Dixon RA, Willmitzer L (eds) Plant metabolomics. Springer-Verlag: Berlin Heidelberg New York, pp 3-20
    • Mehrotra B, Mendes P (2006) Bioinformatics: Approaches to integrate metabolomics and other systems biology data. In: Nagata T, Lörz H, Widholm JM (eds) Biotechnology in agriculture and forestry Vol 57: Saito K, Dixon RA, Willmitzer L (eds) Plant metabolomics. Springer-Verlag: Berlin Heidelberg New York, pp 3-20
  • 39
    • 10244225346 scopus 로고    scopus 로고
    • Representation and use of chemistry in the global electronic age
    • Murray-Rust P, Rzepa HS, Tyrell SM, Zhang Y (2004a) Representation and use of chemistry in the global electronic age. Org Biomol Chem 2:3192-3203
    • (2004) Org Biomol Chem , vol.2 , pp. 3192-3203
    • Murray-Rust, P.1    Rzepa, H.S.2    Tyrell, S.M.3    Zhang, Y.4
  • 40
    • 34548838910 scopus 로고    scopus 로고
    • The INChI as an LSID for molecules in lifescience
    • 27-28 October, Cambridge, Massachusetts USA
    • Murray-Rust P, Rzepa HS, Stein S (2004b), The INChI as an LSID for molecules in lifescience. W3C Workshop on Semantic Web for Life Sciences, 27-28 October 2004, Cambridge, Massachusetts USA, http://lists.w3.org/Archives/Public/public-swlsws/2004Sep/att-0026/ inchi.html
    • (2004) W3C Workshop on Semantic Web for Life Sciences
    • Murray-Rust, P.1    Rzepa, H.S.2    Stein, S.3
  • 47
    • 24144495559 scopus 로고    scopus 로고
    • MAVisto: A tool for the exploration of network motifs
    • Schreiber F, Schwobbermeyer H (2005) MAVisto: A tool for the exploration of network motifs. Bioinformatics 21:3572-3574
    • (2005) Bioinformatics , vol.21 , pp. 3572-3574
    • Schreiber, F.1    Schwobbermeyer, H.2
  • 48
    • 0004144027 scopus 로고    scopus 로고
    • SciFinder - A new generation of research tool
    • Schwall K, Zielenbach K (2000) SciFinder - A new generation of research tool Chem Innovat 30:45-50
    • (2000) Chem Innovat , vol.30 , pp. 45-50
    • Schwall, K.1    Zielenbach, K.2
  • 49
    • 20444410443 scopus 로고    scopus 로고
    • Advancing chemistry and biology through diversity-oriented synthesis of natural product-like libraries
    • Shang S, Tan DS (2005) Advancing chemistry and biology through diversity-oriented synthesis of natural product-like libraries. Curr Opin Chem Biol 9:248-258
    • (2005) Curr Opin Chem Biol , vol.9 , pp. 248-258
    • Shang, S.1    Tan, D.S.2
  • 50
    • 84983633298 scopus 로고    scopus 로고
    • Shinbo Y, Nakamura Y, Altaf-Ul-Amin M, Asahi H, Kurokawa K, Arita M, Saito K, Ohta D, Shibata D, Kanaya S (2006) KNApSAcK: A comprehensive species-metabolite relationship database. In: Nagata T, Lörz H, Widholm JM (eds) Biotechnology in agriculture and forestry 57: Saito K, Dixon RA, Willmitzer L (eds) Plant metabolomics. Springer-Verlag: Berlin Heidelberg New York, pp 165-184
    • Shinbo Y, Nakamura Y, Altaf-Ul-Amin M, Asahi H, Kurokawa K, Arita M, Saito K, Ohta D, Shibata D, Kanaya S (2006) KNApSAcK: A comprehensive species-metabolite relationship database. In: Nagata T, Lörz H, Widholm JM (eds) Biotechnology in agriculture and forestry Vol 57: Saito K, Dixon RA, Willmitzer L (eds) Plant metabolomics. Springer-Verlag: Berlin Heidelberg New York, pp 165-184
  • 51
    • 13244262861 scopus 로고    scopus 로고
    • Metabolite profiling of fungi and yeast: From phenotype to metabolome by MS and informatics
    • Smedsgaard J, Nielsen J (2005) Metabolite profiling of fungi and yeast: from phenotype to metabolome by MS and informatics. J Exp Bot 56:273-286
    • (2005) J Exp Bot , vol.56 , pp. 273-286
    • Smedsgaard, J.1    Nielsen, J.2
  • 54
    • 0037046558 scopus 로고    scopus 로고
    • Creating a bioinformatics nation
    • Stein L (2002) Creating a bioinformatics nation. Nature 417:119-120
    • (2002) Nature , vol.417 , pp. 119-120
    • Stein, L.1
  • 55
    • 0033452842 scopus 로고    scopus 로고
    • An integrated method for spectrum extraction and compound identification from gas chromatography/mass spectrometry data
    • Stein SE (1999) An integrated method for spectrum extraction and compound identification from gas chromatography/mass spectrometry data. J Am Soc Mass Spectrom 10:770-781
    • (1999) J Am Soc Mass Spectrom , vol.10 , pp. 770-781
    • Stein, S.E.1
  • 56
    • 38149068740 scopus 로고    scopus 로고
    • Methods, applications and concepts of metabolite profiling: Primary metabolism
    • Fernie AR, Baginsky S eds, biology. Birkhäuser: In press
    • Steinhauser D, Kopka J (2007) Methods, applications and concepts of metabolite profiling: Primary metabolism. In: Fernie AR, Baginsky S (eds) Plant systems biology. Birkhäuser: In press
    • (2007) Plant systems
    • Steinhauser, D.1    Kopka, J.2
  • 57
    • 0345270397 scopus 로고    scopus 로고
    • Plant metabolomics: Large-scale phytochemistry in the functional genomics era
    • Sumner LW, Mendes P, Dixon RA (2003) Plant metabolomics: Large-scale phytochemistry in the functional genomics era. Phytochem 62:817-836
    • (2003) Phytochem , vol.62 , pp. 817-836
    • Sumner, L.W.1    Mendes, P.2    Dixon, R.A.3
  • 58
    • 0345863934 scopus 로고    scopus 로고
    • The CyberCell Database (CCDB): A comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli
    • Sundararaj S, Guo A, Habibi-Nazhad B, Rouani M, Stothard P, Ellison M, Wishart DS (2004) The CyberCell Database (CCDB): A comprehensive, self-updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli. Nucleic Acids Res 32:D293-D295
    • (2004) Nucleic Acids Res , vol.32
    • Sundararaj, S.1    Guo, A.2    Habibi-Nazhad, B.3    Rouani, M.4    Stothard, P.5    Ellison, M.6    Wishart, D.S.7
  • 60
    • 0345701915 scopus 로고    scopus 로고
    • Construction and application of a mass spectral and retention time index database generated from plant GC/ EI-TOF-MS metabolite profiles
    • Wagner C, Sefkow M, Kopka J (2003) Construction and application of a mass spectral and retention time index database generated from plant GC/ EI-TOF-MS metabolite profiles. Phytochem 62:887-900
    • (2003) Phytochem , vol.62 , pp. 887-900
    • Wagner, C.1    Sefkow, M.2    Kopka, J.3
  • 61
    • 0036930006 scopus 로고    scopus 로고
    • Analysis of SciFinder scholar and web of science citation searches
    • Whitley KM (2002) Analysis of SciFinder scholar and web of science citation searches. J Amer Soc Informat Sci Technol 53:1210-1215
    • (2002) J Amer Soc Informat Sci Technol , vol.53 , pp. 1210-1215
    • Whitley, K.M.1
  • 62
    • 0037935183 scopus 로고    scopus 로고
    • BioMOBY: An open source biological web services proposal
    • Wilkinson MD, Links M (2002) BioMOBY: An open source biological web services proposal. Brief Bioinformatics 3:331-341
    • (2002) Brief Bioinformatics , vol.3 , pp. 331-341
    • Wilkinson, M.D.1    Links, M.2
  • 64
    • 13444264729 scopus 로고    scopus 로고
    • GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox
    • Zimmermann P, Hirsch-Hoffmann M, Hennig L, Gruissem W (2004) GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol 136:2621-2632
    • (2004) Plant Physiol , vol.136 , pp. 2621-2632
    • Zimmermann, P.1    Hirsch-Hoffmann, M.2    Hennig, L.3    Gruissem, W.4
  • 65
    • 27244438560 scopus 로고    scopus 로고
    • Gene-expression analysis and network discovery using Genevestigator
    • Zimmermann P, Hennig L, Gruissem W (2005) Gene-expression analysis and network discovery using Genevestigator. Trends Plant Sci 10:407-409
    • (2005) Trends Plant Sci , vol.10 , pp. 407-409
    • Zimmermann, P.1    Hennig, L.2    Gruissem, W.3


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