-
1
-
-
73349121270
-
An introduction to liquid chromatography-mass spectrometry instrumentation applied in plant metabolomic analyses
-
Allwood, J.W., and, Goodacre, R., (2010) An introduction to liquid chromatography-mass spectrometry instrumentation applied in plant metabolomic analyses. Phytochem. Anal. 21, 33-47.
-
(2010)
Phytochem. Anal.
, vol.21
, pp. 33-47
-
-
Allwood, J.W.1
Goodacre, R.2
-
2
-
-
68949091826
-
Plant PA signaling via diacylglycerol kinase
-
Arisz, S.A., Testerink, C., and, Munnik, T., (2009) Plant PA signaling via diacylglycerol kinase. Biochim. Biophys. Acta, 1791, 869-875.
-
(2009)
Biochim. Biophys. Acta
, vol.1791
, pp. 869-875
-
-
Arisz, S.A.1
Testerink, C.2
Munnik, T.3
-
3
-
-
69249103778
-
Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations
-
Arrivault, S., Guenther, M., Ivakov, A., Feil, R., Vosloh, D., van Dongen, J.T., Sulpice, R., and, Stitt, M., (2009) Use of reverse-phase liquid chromatography, linked to tandem mass spectrometry, to profile the Calvin cycle and other metabolic intermediates in Arabidopsis rosettes at different carbon dioxide concentrations. Plant J. 59, 826-839.
-
(2009)
Plant J.
, vol.59
, pp. 826-839
-
-
Arrivault, S.1
Guenther, M.2
Ivakov, A.3
Feil, R.4
Vosloh, D.5
Van Dongen, J.T.6
Sulpice, R.7
Stitt, M.8
-
4
-
-
55749095402
-
The very-long-chain hydroxy fatty acyl-CoA dehydratase PASTICCINO2 is essential and limiting for plant development
-
Bach, L., Michaelson, L.V., Haslam, R., et al. (2008) The very-long-chain hydroxy fatty acyl-CoA dehydratase PASTICCINO2 is essential and limiting for plant development. Proc. Natl Acad. Sci. USA, 105, 14727-14731.
-
(2008)
Proc. Natl Acad. Sci. USA
, vol.105
, pp. 14727-14731
-
-
Bach, L.1
Michaelson, L.V.2
Haslam, R.3
-
5
-
-
77957230413
-
Correction of mass calibration gaps in liquid chromatography-mass spectrometry metabolomics data
-
Benton, H.P., Want, E.J., and, Ebbels, T.M., (2010) Correction of mass calibration gaps in liquid chromatography-mass spectrometry metabolomics data. Bioinformatics, 26, 2488-2489.
-
(2010)
Bioinformatics
, vol.26
, pp. 2488-2489
-
-
Benton, H.P.1
Want, E.J.2
Ebbels, T.M.3
-
6
-
-
53749101844
-
Metabolome analysis of biosynthetic mutants reveals a diversity of metabolic changes and allows identification of a large number of new compounds in arabidopsis
-
DOI 10.1104/pp.108.117754
-
Bottcher, C., von Roepenack-Lahaye, E., Schmidt, J., Schmotz, C., Neumann, S., Scheel, D., and, Clemens, S., (2008) Metabolome analysis of biosynthetic mutants reveals a diversity of metabolic changes and allows identification of a large number of new compounds in Arabidopsis. Plant Physiol. 147, 2107-2120. (Pubitemid 352844226)
-
(2008)
Plant Physiology
, vol.147
, Issue.4
, pp. 2107-2120
-
-
Bottcher, C.1
Von Roepenack-Lahaye, E.2
Schmidt, J.3
Schmotz, C.4
Neumann, S.5
Scheel, D.6
Clemens, S.7
-
7
-
-
33745728711
-
MET-IDEA: Data extraction tool for mass spectrometry-based metabolomics
-
Broeckling, C.D., Reddy, I.R., Duran, A.L., Zhao, X., and, Sumner, L.W., (2006) MET-IDEA: data extraction tool for mass spectrometry-based metabolomics. Anal. Chem. 78, 4334-4341.
-
(2006)
Anal. Chem.
, vol.78
, pp. 4334-4341
-
-
Broeckling, C.D.1
Reddy, I.R.2
Duran, A.L.3
Zhao, X.4
Sumner, L.W.5
-
8
-
-
0037311116
-
Variation of glucosinolate accumulation among different organs and developmental stages of Arabidopsis thaliana
-
DOI 10.1016/S0031-9422(02)00549-6, PII S0031942202005496
-
Brown, P.D., Tokuhisa, J.G., Reichelt, M., and, Gershenzon, J., (2003) Variation of glucosinolate accumulation among different organs and developmental stages of Arabidopsis thaliana. Phytochemistry, 62, 471-481. (Pubitemid 36168949)
-
(2003)
Phytochemistry
, vol.62
, Issue.3
, pp. 471-481
-
-
Brown, P.D.1
Tokuhisa, J.G.2
Reichelt, M.3
Gershenzon, J.4
-
9
-
-
33748763000
-
Wounding stimulates the accumulation of glycerolipids containing oxophytodienoic acid and dinor-oxophytodienoic acid in arabidopsis leaves
-
DOI 10.1104/pp.106.082115
-
Buseman, C.M., Tamura, P., Sparks, A.A., et al. (2006) Wounding stimulates the accumulation of glycerolipids containing oxophytodienoic acid and dinor-oxophytodienoic acid in Arabidopsis leaves. Plant Physiol. 142, 28-39. (Pubitemid 44412226)
-
(2006)
Plant Physiology
, vol.142
, Issue.1
, pp. 28-39
-
-
Buseman, C.M.1
Tamura, P.2
Sparks, A.A.3
Baughman, E.J.4
Maatta, S.5
Zhao, J.6
Roth, M.R.7
Esch, S.W.8
Shah, J.9
Williams, T.D.10
Welti, R.11
-
10
-
-
18044394444
-
The secondary metabolism of Arabidopsis thaliana: Growing like a weed
-
DOI 10.1016/j.pbi.2005.03.012
-
D'Auria, J.C., and, Gershenzon, J., (2005) The secondary metabolism of Arabidopsis thaliana: growing like a weed. Curr. Opin. Plant Biol. 8, 308-316. (Pubitemid 40599984)
-
(2005)
Current Opinion in Plant Biology
, vol.8
, Issue.3 SPEC. ISS.
, pp. 308-316
-
-
D'Auria, J.C.1
Gershenzon, J.2
-
11
-
-
34248512719
-
Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry
-
DOI 10.1038/nprot.2007.95, PII NPROT.2007.95
-
De Vos, R.C., Moco, S., Lommen, A., Keurentjes, J.J., Bino, R.J., and, Hall, R.D., (2007) Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry. Nat. Protoc. 2, 778-791. (Pubitemid 46745574)
-
(2007)
Nature Protocols
, vol.2
, Issue.4
, pp. 778-791
-
-
De Vos, R.C.H.1
Moco, S.2
Lommen, A.3
Keurentjes, J.J.B.4
Bino, R.J.5
Hall, R.D.6
-
12
-
-
33846000626
-
Mass spectrometry-based metabolomics
-
DOI 10.1002/mas.20108
-
Dettmer, K., Aronov, P.A., and, Hammock, B.D., (2007) Mass spectrometry-based metabolomics. Mass Spectrom. Rev. 26, 51-78. (Pubitemid 46051813)
-
(2007)
Mass Spectrometry Reviews
, vol.26
, Issue.1
, pp. 51-78
-
-
Dettmer, K.1
Aronov, P.A.2
Hammock, B.D.3
-
13
-
-
33747871812
-
Quantitative profiling of polar glycerolipid species from organs of wild-type Arabidopsis and a PHOSPHOLIPASE Dα1 knockout mutant
-
DOI 10.1016/j.phytochem.2006.06.005, PII S0031942206003219
-
Devaiah, S.P., Roth, M.R., Baughman, E., Li, M., Tamura, P., Jeannotte, R., Welti, R., and, Wang, X., (2006) Quantitative profiling of polar glycerolipid species from organs of wild-type Arabidopsis and a phospholipase Dalpha1 knockout mutant. Phytochemistry, 67, 1907-1924. (Pubitemid 44291405)
-
(2006)
Phytochemistry
, vol.67
, Issue.17
, pp. 1907-1924
-
-
Devaiah, S.P.1
Roth, M.R.2
Baughman, E.3
Li, M.4
Tamura, P.5
Jeannotte, R.6
Welti, R.7
Wang, X.8
-
14
-
-
0036512409
-
Galactolipids rule in seed plants
-
DOI 10.1016/S1360-1385(01)02216-6, PII S1360138501022166
-
Dormann, P., and, Benning, C., (2002) Galactolipids rule in seed plants. Trends Plant Sci. 7, 112-118. (Pubitemid 36726436)
-
(2002)
Trends in Plant Science
, vol.7
, Issue.3
, pp. 112-118
-
-
Dormann, P.1
Benning, C.2
-
15
-
-
42449122308
-
Current trends and future requirements for the mass spectrometric investigation of microbial, mammalian and plant metabolomes
-
Dunn, W.B., (2008) Current trends and future requirements for the mass spectrometric investigation of microbial, mammalian and plant metabolomes. Phys. Biol. 5, 011001.
-
(2008)
Phys. Biol.
, vol.5
, pp. 011001
-
-
Dunn, W.B.1
-
16
-
-
36549081975
-
Advances of high-resolution NMR techniques in the structural and metabolic analysis of plant biochemistry
-
DOI 10.1016/j.phytochem.2007.09.028, PII S0031942207005729, Highlights in the Evolution of Phytochemistry: 50 Years of the Phytochemical Society of Europe
-
Eisenreich, W., and, Bacher, A., (2007) Advances of high-resolution NMR techniques in the structural and metabolic analysis of plant biochemistry. Phytochemistry, 68, 2799-2815. (Pubitemid 350180954)
-
(2007)
Phytochemistry
, vol.68
, Issue.22-24
, pp. 2799-2815
-
-
Eisenreich, W.1
Bacher, A.2
-
17
-
-
66349098682
-
Update of the LIPID MAPS comprehensive classification system for lipids
-
Fahy, E., Subramaniam, S., Murphy, R.C., Nishijima, M., Raetz, C.R., Shimizu, T., Spener, F., van Meer, G., Wakelam, M.J., and, Dennis, E.A., (2009) Update of the LIPID MAPS comprehensive classification system for lipids. J. Lipid Res. 50 (Suppl.), S9-S14.
-
(2009)
J. Lipid Res.
, vol.50
, Issue.SUPPL.
-
-
Fahy, E.1
Subramaniam, S.2
Murphy, R.C.3
Nishijima, M.4
Raetz, C.R.5
Shimizu, T.6
Spener, F.7
Van Meer, G.8
Wakelam, M.J.9
Dennis, E.A.10
-
18
-
-
0034470049
-
Does triacylglycerol biosynthesis require diacylglycerol acyltransferase (DAGAT)?
-
DOI 10.1042/0300-5127:0280698
-
Fraser, T., Waters, A., Chatrattanakunchai, S., and, Stobart, K., (2000) Does triacylglycerol biosynthesis require diacylglycerol acyltransferase (DAGAT)? Biochem. Soc. Trans. 28, 698-700. (Pubitemid 32163236)
-
(2000)
Biochemical Society Transactions
, vol.28
, Issue.6
, pp. 698-700
-
-
Fraser, T.1
Waters, A.2
Chatrattanakunchai, S.3
Stobart, K.4
-
19
-
-
45749099688
-
Metabonomics in cancer diagnosis: Mass spectrometry-based profiling of urinary nucleosides from breast cancer patients
-
DOI 10.1080/13547500802012858, PII 791845894
-
Frickenschmidt, A., Frohlich, H., Bullinger, D., Zell, A., Laufer, S., Gleiter, C.H., Liebich, H., and, Kammerer, B., (2008) Metabonomics in cancer diagnosis: mass spectrometry-based profiling of urinary nucleosides from breast cancer patients. Biomarkers, 13, 435-449. (Pubitemid 351865818)
-
(2008)
Biomarkers
, vol.13
, Issue.4
, pp. 435-449
-
-
Frickenschmidt, A.1
Frohlich, H.2
Bullinger, D.3
Zell, A.4
Laufer, S.5
Gleiter, C.H.6
Liebich, H.7
Kammerer, B.8
-
20
-
-
58149110910
-
High-resolution direct infusion-based mass spectrometry in combination with whole 13C metabolome isotope labeling allows unambiguous assignment of chemical sum formulas
-
Giavalisco, P., Hummel, J., Lisec, J., Inostroza, A.C., Catchpole, G., and, Willmitzer, L., (2008) High-resolution direct infusion-based mass spectrometry in combination with whole 13C metabolome isotope labeling allows unambiguous assignment of chemical sum formulas. Anal. Chem. 80, 9417-9425.
-
(2008)
Anal. Chem.
, vol.80
, pp. 9417-9425
-
-
Giavalisco, P.1
Hummel, J.2
Lisec, J.3
Inostroza, A.C.4
Catchpole, G.5
Willmitzer, L.6
-
21
-
-
68049083650
-
13C isotope-labeled metabolomes allowing for improved compound annotation and relative quantification in liquid chromatography-mass spectrometry-based metabolomic research
-
Giavalisco, P., Kohl, K., Hummel, J., Seiwert, B., and, Willmitzer, L., (2009) 13C isotope-labeled metabolomes allowing for improved compound annotation and relative quantification in liquid chromatography-mass spectrometry-based metabolomic research. Anal. Chem. 81, 6546-6551.
-
(2009)
Anal. Chem.
, vol.81
, pp. 6546-6551
-
-
Giavalisco, P.1
Kohl, K.2
Hummel, J.3
Seiwert, B.4
Willmitzer, L.5
-
22
-
-
47749121066
-
Spatial and temporal dynamics of jasmonate synthesis and accumulation in Arabidopsis in response to wounding
-
Glauser, G., Grata, E., Dubugnon, L., Rudaz, S., Farmer, E.E., and, Wolfender, J.L., (2008) Spatial and temporal dynamics of jasmonate synthesis and accumulation in Arabidopsis in response to wounding. J. Biol. Chem. 283, 16400-16407.
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 16400-16407
-
-
Glauser, G.1
Grata, E.2
Dubugnon, L.3
Rudaz, S.4
Farmer, E.E.5
Wolfender, J.L.6
-
23
-
-
33750475205
-
Metabolomics-based systems biology and personalized medicine: Moving towards n = 1 clinical trials?
-
DOI 10.2217/14622416.7.7.1087
-
van der Greef, J., Hankemeier, T., and, McBurney, R.N., (2006) Metabolomics-based systems biology and personalized medicine: moving towards n = 1 clinical trials? Pharmacogenomics, 7, 1087-1094. (Pubitemid 44644787)
-
(2006)
Pharmacogenomics
, vol.7
, Issue.7
, pp. 1087-1094
-
-
Van Der Greef, J.1
Hankemeier, T.2
McBurney, R.N.3
-
24
-
-
68949157005
-
Mass spectrometry: From proteomics to metabolomics and lipidomics
-
Griffiths, W.J., and, Wang, Y., (2009) Mass spectrometry: from proteomics to metabolomics and lipidomics. Chem. Soc. Rev. 38, 1882-1896.
-
(2009)
Chem. Soc. Rev.
, vol.38
, pp. 1882-1896
-
-
Griffiths, W.J.1
Wang, Y.2
-
25
-
-
34548739008
-
Stable isotope assisted assignment of elemental compositions for metabolomics
-
DOI 10.1021/ac070346t
-
Hegeman, A.D., Schulte, C.F., Cui, Q., Lewis, I.A., Huttlin, E.L., Eghbalnia, H., Harms, A.C., Ulrich, E.L., Markley, J.L., and, Sussman, M.R., (2007) Stable isotope assisted assignment of elemental compositions for metabolomics. Anal. Chem. 79, 6912-6921. (Pubitemid 47438668)
-
(2007)
Analytical Chemistry
, vol.79
, Issue.18
, pp. 6912-6921
-
-
Hegeman, A.D.1
Schulte, C.F.2
Cui, Q.3
Lewis, I.A.4
Huttlin, E.L.5
Eghbalnia, H.6
Harms, A.C.7
Ulrich, E.L.8
Markley, J.L.9
Sussman, M.R.10
-
26
-
-
34547675713
-
2 labelling
-
DOI 10.1016/j.phytochem.2007.03.026, PII S0031942207002038
-
Huege, J., Sulpice, R., Gibon, Y., Lisec, J., Koehl, K., and, Kopka, J., (2007) GC-EI-TOF-MS analysis of in vivo carbon-partitioning into soluble metabolite pools of higher plants by monitoring isotope dilution after (13)CO(2) labelling. Phytochemistry, 68, 2258-2272. (Pubitemid 47211181)
-
(2007)
Phytochemistry
, vol.68
, Issue.16-18
, pp. 2258-2272
-
-
Huege, J.1
Sulpice, R.2
Gibon, Y.3
Lisec, J.4
Koehl, K.5
Kopka, J.6
-
27
-
-
84872000271
-
Ultra performance liquid chromatography and high resolution mass spectrometry for the analysis of plant lipids
-
in press.
-
Hummel, J., Segu, S., Li, Y., Irgang, S., Jueppner, J., and, Giavalisco, P., (2011) Ultra performance liquid chromatography and high resolution mass spectrometry for the analysis of plant lipids. Frontiers in Plant Physiology, in press.
-
(2011)
Frontiers in Plant Physiology
-
-
Hummel, J.1
Segu, S.2
Li, Y.3
Irgang, S.4
Jueppner, J.5
Giavalisco, P.6
-
28
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
(supplement 1), D480-D484.
-
Kanehisa, M., Araki, M., Goto, S., et al. (2008) KEGG for linking genomes to life and the environment. Nucleic Acids Res. 36 (supplement 1), D480-D484.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
-
29
-
-
34347405493
-
Data processing for mass spectrometry-based metabolomics
-
DOI 10.1016/j.chroma.2007.04.021, PII S0021967307006966, Data Analysis in Chromatography
-
Katajamaa, M., and, Oresic, M., (2007) Data processing for mass spectrometry-based metabolomics. J. Chromatogr. 1158, 318-328. (Pubitemid 47021150)
-
(2007)
Journal of Chromatography A
, vol.1158
, Issue.1-2
, pp. 318-328
-
-
Katajamaa, M.1
Oresic, M.2
-
30
-
-
73349090880
-
Sample preparation for plant metabolomics
-
Kim, H.K., and, Verpoorte, R., (2010) Sample preparation for plant metabolomics. Phytochem. Anal. 21, 4-13.
-
(2010)
Phytochem. Anal.
, vol.21
, pp. 4-13
-
-
Kim, H.K.1
Verpoorte, R.2
-
31
-
-
33646754900
-
Metabolomic database annotations via query of elemental compositions: Mass accuracy is insufficient even at less than 1 ppm
-
Kind, T., and, Fiehn, O., (2006) Metabolomic database annotations via query of elemental compositions: mass accuracy is insufficient even at less than 1 ppm. BMC Bioinformatics, 7, 234.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 234
-
-
Kind, T.1
Fiehn, O.2
-
32
-
-
48049084559
-
LC-MS metabolic profiling of Arabidopsis thaliana plant leaves and cell cultures: Optimization of pre-LC-MS procedure parameters
-
t'Kindt, R., De Veylder, L., Storme, M., Deforce, D., and, Van Bocxlaer, J., (2008) LC-MS metabolic profiling of Arabidopsis thaliana plant leaves and cell cultures: optimization of pre-LC-MS procedure parameters. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 871, 37-43.
-
(2008)
J. Chromatogr. B Analyt. Technol. Biomed. Life Sci.
, vol.871
, pp. 37-43
-
-
T'Kindt, R.1
De Veylder, L.2
Storme, M.3
Deforce, D.4
Van Bocxlaer, J.5
-
33
-
-
79952672684
-
A topological map of the compartmentalized Arabidopsis thaliana leaf metabolome
-
Krueger, S., Giavalisco, P., Krall, L., Steinhauser, M.C., Bussis, D., Usadel, B., Flugge, U.I., Fernie, A.R., Willmitzer, L., and, Steinhauser, D., (2011) A topological map of the compartmentalized Arabidopsis thaliana leaf metabolome. PLoS ONE 6, e17806.
-
(2011)
PLoS ONE
, vol.6
-
-
Krueger, S.1
Giavalisco, P.2
Krall, L.3
Steinhauser, M.C.4
Bussis, D.5
Usadel, B.6
Flugge, U.I.7
Fernie, A.R.8
Willmitzer, L.9
Steinhauser, D.10
-
34
-
-
33847768117
-
Towards the plant metabolome and beyond
-
DOI 10.1038/nrm2098, PII NRM2098
-
Last, R.L., Jones, A.D., and, Shachar-Hill, Y., (2007) Towards the plant metabolome and beyond. Nat. Rev. 8, 167-174. (Pubitemid 46432526)
-
(2007)
Nature Reviews Molecular Cell Biology
, vol.8
, Issue.2
, pp. 167-174
-
-
Last, R.L.1
Jones, A.D.2
Shachar-Hill, Y.3
-
35
-
-
34248580879
-
Gas chromatography mass spectrometry-based metabolite profiling in plants
-
Lisec, J., Schauer, N., Kopka, J., Willmitzer, L., and, Fernie, A.R., (2006) Gas chromatography mass spectrometry-based metabolite profiling in plants. Nat. Protoc. 1, 387-396.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 387-396
-
-
Lisec, J.1
Schauer, N.2
Kopka, J.3
Willmitzer, L.4
Fernie, A.R.5
-
36
-
-
65249132985
-
MetAlign: Interface-driven, versatile metabolomics tool for hyphenated full-scan mass spectrometry data preprocessing
-
Lommen, A., (2009) MetAlign: interface-driven, versatile metabolomics tool for hyphenated full-scan mass spectrometry data preprocessing. Anal. Chem. 81, 3079-3086.
-
(2009)
Anal. Chem.
, vol.81
, pp. 3079-3086
-
-
Lommen, A.1
-
37
-
-
77951072181
-
Metabolomic analysis via reversed-phase ion-pairing liquid chromatography coupled to a stand alone orbitrap mass spectrometer
-
Lu, W., Clasquin, M.F., Melamud, E., Amador-Noguez, D., Caudy, A.A., and, Rabinowitz, J.D., (2010) Metabolomic analysis via reversed-phase ion-pairing liquid chromatography coupled to a stand alone orbitrap mass spectrometer. Anal. Chem. 82, 3212-3221.
-
(2010)
Anal. Chem.
, vol.82
, pp. 3212-3221
-
-
Lu, W.1
Clasquin, M.F.2
Melamud, E.3
Amador-Noguez, D.4
Caudy, A.A.5
Rabinowitz, J.D.6
-
38
-
-
33947732521
-
Rapid measurement of sphingolipids from Arabidopsis thaliana by reversed-phase high-performance liquid chromatography coupled to electrospray ionization tandem mass spectrometry
-
DOI 10.1002/rcm.2962
-
Markham, J.E., and, Jaworski, J.G., (2007) Rapid measurement of sphingolipids from Arabidopsis thaliana by reversed-phase high-performance liquid chromatography coupled to electrospray ionization tandem mass spectrometry. Rapid Commun. Mass Spectrom. 21, 1304-1314. (Pubitemid 46506586)
-
(2007)
Rapid Communications in Mass Spectrometry
, vol.21
, Issue.7
, pp. 1304-1314
-
-
Markham, J.E.1
Jaworski, J.G.2
-
39
-
-
33845631601
-
Microbial metabolomics: Past, present and future methodologies
-
DOI 10.1007/s10529-006-9218-0
-
Mashego, M.R., Rumbold, K., De Mey, M., Vandamme, E., Soetaert, W., and, Heijnen, J.J., (2007) Microbial metabolomics: past, present and future methodologies. Biotechnol. Lett. 29, 1-16. (Pubitemid 44950152)
-
(2007)
Biotechnology Letters
, vol.29
, Issue.1
, pp. 1-16
-
-
Mashego, M.R.1
Rumbold, K.2
De Mey, M.3
Vandamme, E.4
Soetaert, W.5
Heijnen, J.J.6
-
40
-
-
70449436059
-
Assessment of metabolome annotation quality: A method for evaluating the false discovery rate of elemental composition searches
-
Matsuda, F., Shinbo, Y., Oikawa, A., Hirai, M.Y., Fiehn, O., Kanaya, S., and, Saito, K., (2009a) Assessment of metabolome annotation quality: a method for evaluating the false discovery rate of elemental composition searches. PLoS ONE, 4, e7490.
-
(2009)
PLoS ONE
, vol.4
-
-
Matsuda, F.1
Shinbo, Y.2
Oikawa, A.3
Hirai, M.Y.4
Fiehn, O.5
Kanaya, S.6
Saito, K.7
-
41
-
-
58849117570
-
MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites
-
Matsuda, F., Yonekura-Sakakibara, K., Niida, R., Kuromori, T., Shinozaki, K., and, Saito, K., (2009b) MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites. Plant J. 57, 555-577.
-
(2009)
Plant J.
, vol.57
, pp. 555-577
-
-
Matsuda, F.1
Yonekura-Sakakibara, K.2
Niida, R.3
Kuromori, T.4
Shinozaki, K.5
Saito, K.6
-
42
-
-
50049102248
-
Lipid extraction by methyl-tert-butyl ether for high-throughput lipidomics
-
Matyash, V., Liebisch, G., Kurzchalia, T.V., Shevchenko, A., and, Schwudke, D., (2008) Lipid extraction by methyl-tert-butyl ether for high-throughput lipidomics. J. Lipid Res. 49, 1137-1146.
-
(2008)
J. Lipid Res.
, vol.49
, pp. 1137-1146
-
-
Matyash, V.1
Liebisch, G.2
Kurzchalia, T.V.3
Shevchenko, A.4
Schwudke, D.5
-
43
-
-
77950526062
-
Involvement of AtNAP1 in the regulation of chlorophyll degradation in Arabidopsis thaliana
-
Nagane, T., Tanaka, A., and, Tanaka, R., (2010) Involvement of AtNAP1 in the regulation of chlorophyll degradation in Arabidopsis thaliana. Planta, 231, 939-949.
-
(2010)
Planta
, vol.231
, pp. 939-949
-
-
Nagane, T.1
Tanaka, A.2
Tanaka, R.3
-
44
-
-
67649877980
-
Metabolomics-oriented isolation and structure elucidation of 37 compounds including two anthocyanins from Arabidopsis thaliana
-
Nakabayashi, R., Kusano, M., Kobayashi, M., Tohge, T., Yonekura-Sakakibara, K., Kogure, N., Yamazaki, M., Kitajima, M., Saito, K., and, Takayama, H., (2009) Metabolomics-oriented isolation and structure elucidation of 37 compounds including two anthocyanins from Arabidopsis thaliana. Phytochemistry, 70, 1017-1029.
-
(2009)
Phytochemistry
, vol.70
, pp. 1017-1029
-
-
Nakabayashi, R.1
Kusano, M.2
Kobayashi, M.3
Tohge, T.4
Yonekura-Sakakibara, K.5
Kogure, N.6
Yamazaki, M.7
Kitajima, M.8
Saito, K.9
Takayama, H.10
-
45
-
-
71149117622
-
Metabolic systems biology
-
Palsson, B., (2009) Metabolic systems biology. FEBS Lett. 583, 3900-3904.
-
(2009)
FEBS Lett.
, vol.583
, pp. 3900-3904
-
-
Palsson, B.1
-
46
-
-
33846109344
-
Comparing and combining NMR spectroscopy and mass spectrometry in metabolomics
-
DOI 10.1007/s00216-006-0687-8
-
Pan, Z., and, Raftery, D., (2007) Comparing and combining NMR spectroscopy and mass spectrometry in metabolomics. Anal. Bioanal. Chem. 387, 525-527. (Pubitemid 46067468)
-
(2007)
Analytical and Bioanalytical Chemistry
, vol.387
, Issue.2
, pp. 525-527
-
-
Pan, Z.1
Raftery, D.2
-
47
-
-
77954772536
-
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data
-
Pluskal, T., Castillo, S., Villar-Briones, A., and, Oresic, M., (2010) MZmine 2: modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data. BMC Bioinformatics, 11, 395.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 395
-
-
Pluskal, T.1
Castillo, S.2
Villar-Briones, A.3
Oresic, M.4
-
48
-
-
34247123157
-
Cellular metabolomics of Escherchia coli
-
DOI 10.1586/14789450.4.2.187
-
Rabinowitz, J.D., (2007) Cellular metabolomics of Escherchia coli. Exp. Rev. Proteomics, 4, 187-198. (Pubitemid 46588455)
-
(2007)
Expert Review of Proteomics
, vol.4
, Issue.2
, pp. 187-198
-
-
Rabinowitz, J.D.1
-
49
-
-
33847414492
-
Novel application of reversed-phase UPLC-oaTOF-MS for lipid analysis in complex biological mixtures: A new tool for lipidomics
-
DOI 10.1021/pr060611b
-
Rainville, P.D., Stumpf, C.L., Shockcor, J.P., Plumb, R.S., and, Nicholson, J.K., (2007) Novel application of reversed-phase UPLC-oaTOF-MS for lipid analysis in complex biological mixtures: a new tool for lipidomics. J. Proteome Res. 6, 552-558. (Pubitemid 46340159)
-
(2007)
Journal of Proteome Research
, vol.6
, Issue.2
, pp. 552-558
-
-
Rainville, P.D.1
Stumpf, C.L.2
Shockcor, J.P.3
Plumb, R.S.4
Nicholson, J.K.5
-
50
-
-
77951880802
-
Metabolomics for functional genomics, systems biology, and biotechnology
-
Saito, K., and, Matsuda, F., (2010) Metabolomics for functional genomics, systems biology, and biotechnology. Annu. Rev. Plant Biol. 61, 463-489.
-
(2010)
Annu. Rev. Plant Biol.
, vol.61
, pp. 463-489
-
-
Saito, K.1
Matsuda, F.2
-
51
-
-
66449128543
-
Pheophytin pheophorbide hydrolase (pheophytinase) is involved in chlorophyll breakdown during leaf senescence in Arabidopsis
-
Schelbert, S., Aubry, S., Burla, B., Agne, B., Kessler, F., Krupinska, K., and, Hortensteiner, S., (2009) Pheophytin pheophorbide hydrolase (pheophytinase) is involved in chlorophyll breakdown during leaf senescence in Arabidopsis. Plant Cell, 21, 767-785.
-
(2009)
Plant Cell
, vol.21
, pp. 767-785
-
-
Schelbert, S.1
Aubry, S.2
Burla, B.3
Agne, B.4
Kessler, F.5
Krupinska, K.6
Hortensteiner, S.7
-
52
-
-
84983633298
-
KNApSAcK: A comprehensive species-metabolite relationship database
-
Shinbo, Y., Nakamura, Y., Altaf-Ul-Amin, M., Asah, H., Kurokawa, K., Arita, M., Saito, K., Ohta, D., Shibata, D., and, Kanaya, S., (2006) KNApSAcK: a comprehensive species-metabolite relationship database. Biotechnol. Agric. For. 57, 165-181.
-
(2006)
Biotechnol. Agric. For.
, vol.57
, pp. 165-181
-
-
Shinbo, Y.1
Nakamura, Y.2
Altaf-Ul-Amin, M.3
Asah, H.4
Kurokawa, K.5
Arita, M.6
Saito, K.7
Ohta, D.8
Shibata, D.9
Kanaya, S.10
-
53
-
-
36348938891
-
Quantification of 22 phthalate metabolites in human urine
-
DOI 10.1016/j.jchromb.2007.10.023, PII S1570023207007337
-
Silva, M.J., Samandar, E., Preau, J.L. Jr, Reidy, J.A., Needham, L.L., and, Calafat, A.M., (2007) Quantification of 22 phthalate metabolites in human urine. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 860, 106-112. (Pubitemid 350161471)
-
(2007)
Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences
, vol.860
, Issue.1
, pp. 106-112
-
-
Silva, M.J.1
Samandar, E.2
Preau Jr., J.L.3
Reidy, J.A.4
Needham, L.L.5
Calafat, A.M.6
-
54
-
-
32444446805
-
XCMS: Processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
-
DOI 10.1021/ac051437y
-
Smith, C.A., Want, E.J., O'Maille, G., Abagyan, R., and, Siuzdak, G., (2006) XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Anal. Chem. 78, 779-787. (Pubitemid 43228585)
-
(2006)
Analytical Chemistry
, vol.78
, Issue.3
, pp. 779-787
-
-
Smith, C.A.1
Want, E.J.2
O'Maille, G.3
Abagyan, R.4
Siuzdak, G.5
-
55
-
-
77950811675
-
Hydrophilic interaction chromatography coupled to MS for metabonomic/metabolomic studies
-
Spagou, K., Tsoukali, H., Raikos, N., Gika, H., Wilson, I.D., and, Theodoridis, G., (2010) Hydrophilic interaction chromatography coupled to MS for metabonomic/metabolomic studies. J. Sep. Sci. 33, 716-727.
-
(2010)
J. Sep. Sci.
, vol.33
, pp. 716-727
-
-
Spagou, K.1
Tsoukali, H.2
Raikos, N.3
Gika, H.4
Wilson, I.D.5
Theodoridis, G.6
-
56
-
-
0038356303
-
Plant sphingolipids: Structural diversity, biosynthesis, first genes and functions
-
DOI 10.1016/S1388-1981(03)00033-7
-
Sperling, P., and, Heinz, E., (2003) Plant sphingolipids: structural diversity, biosynthesis, first genes and functions. Biochim. Biophys. Acta, 1632, 1-15. (Pubitemid 36628111)
-
(2003)
Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids
, vol.1632
, Issue.1-3
, pp. 1-15
-
-
Sperling, P.1
Heinz, E.2
-
57
-
-
34250663450
-
MAM3 catalyzes the formation of all aliphatic glucosinolate chain lengths in Arabidopsis
-
DOI 10.1104/pp.106.091579
-
Textor, S., de Kraker, J.W., Hause, B., Gershenzon, J., and, Tokuhisa, J.G., (2007) MAM3 catalyzes the formation of all aliphatic glucosinolate chain lengths in Arabidopsis. Plant Physiol. 144, 60-71. (Pubitemid 46941605)
-
(2007)
Plant Physiology
, vol.144
, Issue.1
, pp. 60-71
-
-
Textor, S.1
De Kraker, J.-W.2
Hause, B.3
Gershenzon, J.4
Tokuhisa, J.G.5
-
58
-
-
62549159971
-
Web-based resources for mass-spectrometry-based metabolomics: A user's guide
-
Tohge, T., and, Fernie, A.R., (2009) Web-based resources for mass-spectrometry-based metabolomics: a user's guide. Phytochemistry, 70, 450-456.
-
(2009)
Phytochemistry
, vol.70
, pp. 450-456
-
-
Tohge, T.1
Fernie, A.R.2
-
59
-
-
67849104638
-
PubChem: A public information system for analyzing bioactivities of small molecules
-
Wang, Y., Xiao, J., Suzek, T.O., Zhang, J., Wang, J., and, Bryant, S.H., (2009) PubChem: a public information system for analyzing bioactivities of small molecules. Nucleic Acids Res. 37, W623-W633.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Wang, Y.1
Xiao, J.2
Suzek, T.O.3
Zhang, J.4
Wang, J.5
Bryant, S.H.6
-
60
-
-
0942265392
-
Process for the integrated extraction, identification and quantification of metabolites, proteins and RNA to reveal their co-regulation in biochemical networks
-
DOI 10.1002/pmic.200200500
-
Weckwerth, W., Wenzel, K., and, Fiehn, O., (2004) Process for the integrated extraction, identification and quantification of metabolites, proteins and RNA to reveal their co-regulation in biochemical networks. Proteomics, 4, 78-83. (Pubitemid 38140876)
-
(2004)
Proteomics
, vol.4
, Issue.1
, pp. 78-83
-
-
Weckwerth, W.1
Wenzel, K.2
Fiehn, O.3
-
62
-
-
57749089675
-
Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis
-
DOI 10.1105/tpc.108.058040
-
Yonekura-Sakakibara, K., Tohge, T., Matsuda, F., Nakabayashi, R., Takayama, H., Niida, R., Watanabe-Takahashi, A., Inoue, E., and, Saito, K., (2008) Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis. Plant Cell, 20, 2160-2176. (Pubitemid 352844517)
-
(2008)
Plant Cell
, vol.20
, Issue.8
, pp. 2160-2176
-
-
Yonekura-Sakakibara, K.1
Tohge, T.2
Matsuda, F.3
Nakabayashi, R.4
Takayama, H.5
Niida, R.6
Watanabe-Takahashi, A.7
Inoue, E.8
Saito, K.9
|