-
1
-
-
0036404889
-
Nontargeted metabolome analysis by use of Fourier transform ion cyclotron mass spectrometry
-
doi:10.1089/15362310260256882
-
Aharoni A, Ric de Vos CH, Verhoeven HA, Maliepaard CA, Kruppa G, Bino R, Goodenowe DB (2002) Nontargeted metabolome analysis by use of Fourier transform ion cyclotron mass spectrometry. OMICS 6: 217-234. doi: 10. 1089/15362310260256882.
-
(2002)
Omics
, vol.6
, pp. 217-234
-
-
Aharoni, A.1
de Ric Vos, C.H.2
Verhoeven, H.A.3
Maliepaard, C.A.4
Kruppa, G.5
Bino, R.6
Goodenowe, D.B.7
-
2
-
-
53249144283
-
PRIMe: a Web site that assembles tools for metabolomics and transcriptomics
-
Akiyama K, Chikayama E, Yuasa H, Shimada Y, Tohge T, Shinozaki K, Hirai MY, Sakurai T, Kikuchi J, Saito K (2008) PRIMe: a Web site that assembles tools for metabolomics and transcriptomics. In Silico Biol 8: 339-345.
-
(2008)
In Silico Biol
, vol.8
, pp. 339-345
-
-
Akiyama, K.1
Chikayama, E.2
Yuasa, H.3
Shimada, Y.4
Tohge, T.5
Shinozaki, K.6
Hirai, M.Y.7
Sakurai, T.8
Kikuchi, J.9
Saito, K.10
-
3
-
-
76549103233
-
Metabolomic screening applied to rice FOX Arabidopsis lines leads to the identification of a gene-changing nitrogen metabolism
-
doi:10.1093/mp/ssp069
-
Albinsky D, Kusano M, Higuchi M, Hayashi N, Kobayashi M, Fukushima A, Mori M, Ichikawa T, Matsui K, Kuroda H, Horii Y, Tsumoto Y, Sakakibara H, Hirochika H, Matsui M, Saito K (2010a) Metabolomic screening applied to rice FOX Arabidopsis lines leads to the identification of a gene-changing nitrogen metabolism. Mol Plant 3: 125-142. doi: 10. 1093/mp/ssp069.
-
(2010)
Mol Plant
, vol.3
, pp. 125-142
-
-
Albinsky, D.1
Kusano, M.2
Higuchi, M.3
Hayashi, N.4
Kobayashi, M.5
Fukushima, A.6
Mori, M.7
Ichikawa, T.8
Matsui, K.9
Kuroda, H.10
Horii, Y.11
Tsumoto, Y.12
Sakakibara, H.13
Hirochika, H.14
Matsui, M.15
Saito, K.16
-
4
-
-
78649997068
-
Widely targeted metabolomics and coexpression analysis as tools to identify genes involved in the side-chain elongation steps of aliphatic glucosinolate biosynthesis
-
doi:10.1007/s00726-010-0681-5
-
Albinsky D, Sawada Y, Kuwahara A, Nagano M, Hirai A, Saito K, Hirai MY (2010b) Widely targeted metabolomics and coexpression analysis as tools to identify genes involved in the side-chain elongation steps of aliphatic glucosinolate biosynthesis. Amino Acids 39: 1067-1075. doi: 10. 1007/s00726-010-0681-5.
-
(2010)
Amino Acids
, vol.39
, pp. 1067-1075
-
-
Albinsky, D.1
Sawada, Y.2
Kuwahara, A.3
Nagano, M.4
Hirai, A.5
Saito, K.6
Hirai, M.Y.7
-
5
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative, doi: 10. 1038/35048692
-
Arabidopsis Genome Initiative (2000) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408: 796-815. doi: 10. 1038/35048692.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
6
-
-
0033425901
-
The critical evaluation of a comprehensive mass spectral library
-
doi:10.1016/S1044-0305(98)00159-7
-
Ausloos P, Clifton CL, Lias SG, Mikaya AI, Stein SE, Tchekhovskoi DV, Sparkman OD, Zaikin V, Zhu D (1999) The critical evaluation of a comprehensive mass spectral library. J Am Soc Mass Spectrom 10: 287-299. doi: 10. 1016/S1044-0305(98)00159-7.
-
(1999)
J Am Soc Mass Spectrom
, vol.10
, pp. 287-299
-
-
Ausloos, P.1
Clifton, C.L.2
Lias, S.G.3
Mikaya, A.I.4
Stein, S.E.5
Tchekhovskoi, D.V.6
Sparkman, O.D.7
Zaikin, V.8
Zhu, D.9
-
7
-
-
77950529287
-
PlantMetabolomics. org: a web portal for plant metabolomics experiments
-
doi: 10. 1104/pp. 109. 151027
-
Bais P, Moon SM, He K, Leitao R, Dreher K, Walk T, Sucaet Y, Barkan L, Wohlgemuth G, Roth MR, Wurtele ES, Dixon P, Fiehn O, Lange BM, Shulaev V, Sumner LW, Welti R, Nikolau BJ, Rhee SY, Dickerson JA (2010) PlantMetabolomics. org: a web portal for plant metabolomics experiments. Plant Physiol 152: 1807-1816. doi: 10. 1104/pp. 109. 151027.
-
(2010)
Plant Physiol
, vol.152
, pp. 1807-1816
-
-
Bais, P.1
Moon, S.M.2
He, K.3
Leitao, R.4
Dreher, K.5
Walk, T.6
Sucaet, Y.7
Barkan, L.8
Wohlgemuth, G.9
Roth, M.R.10
Wurtele, E.S.11
Dixon, P.12
Fiehn, O.13
Lange, B.M.14
Shulaev, V.15
Sumner, L.W.16
Welti, R.17
Nikolau, B.J.18
Rhee, S.Y.19
Dickerson, J.A.20
more..
-
8
-
-
33745077010
-
A metabolomic study of substantial equivalence of field-grown genetically modified wheat
-
doi:10.1111/j.1467-7652.2006.00197.x
-
Baker JM, Hawkins ND, Ward JL, Lovegrove A, Napier JA, Shewry PR, Beale MH (2006) A metabolomic study of substantial equivalence of field-grown genetically modified wheat. Plant Biotechnol J 4: 381-392. doi: 10. 1111/j. 1467-7652. 2006. 00197. x.
-
(2006)
Plant Biotechnol J
, vol.4
, pp. 381-392
-
-
Baker, J.M.1
Hawkins, N.D.2
Ward, J.L.3
Lovegrove, A.4
Napier, J.A.5
Shewry, P.R.6
Beale, M.H.7
-
9
-
-
58149235146
-
Establishing substantial equivalence: metabolomics
-
doi:10.1007/978-1-59745-379-0_17
-
Beale MH, Ward JL, Baker JM (2009) Establishing substantial equivalence: metabolomics. Methods Mol Biol 478: 289-303. doi: 10. 1007/978-1-59745-379-0_17.
-
(2009)
Methods Mol Biol
, vol.478
, pp. 289-303
-
-
Beale, M.H.1
Ward, J.L.2
Baker, J.M.3
-
10
-
-
50049096775
-
XCMS2: processing tandem mass spectrometry data for metabolite identification and structural characterization
-
doi:10.1021/ac800795f
-
Benton HP, Wong DM, Trauger SA, Siuzdak G (2008) XCMS2: processing tandem mass spectrometry data for metabolite identification and structural characterization. Anal Chem 80: 6382-6389. doi: 10. 1021/ac800795f.
-
(2008)
Anal Chem
, vol.80
, pp. 6382-6389
-
-
Benton, H.P.1
Wong, D.M.2
Trauger, S.A.3
Siuzdak, G.4
-
11
-
-
4444309760
-
Potential of metabolomics as a functional genomics tool
-
doi:10.1016/j.tplants.2004.07.004
-
Bino RJ, Hall RD, Fiehn O, Kopka J, Saito K, Draper J, Nikolau BJ, Mendes P, Roessner-Tunali U, Beale MH, Trethewey RN, Lange BM, Wurtele ES, Sumner LW (2004) Potential of metabolomics as a functional genomics tool. Trends Plant Sci 9: 418-425. doi: 10. 1016/j. tplants. 2004. 07. 004.
-
(2004)
Trends Plant Sci
, vol.9
, pp. 418-425
-
-
Bino, R.J.1
Hall, R.D.2
Fiehn, O.3
Kopka, J.4
Saito, K.5
Draper, J.6
Nikolau, B.J.7
Mendes, P.8
Roessner-Tunali, U.9
Beale, M.H.10
Trethewey, R.N.11
Lange, B.M.12
Wurtele, E.S.13
Sumner, L.W.14
-
12
-
-
49549101405
-
Towards de novo identification of metabolites by analyzing tandem mass spectra
-
doi:10.1093/bioinformatics/btn270
-
Bocker S, Rasche F (2008) Towards de novo identification of metabolites by analyzing tandem mass spectra. Bioinformatics 24: i49-i55. doi: 10. 1093/bioinformatics/btn270.
-
(2008)
Bioinformatics
, vol.24
-
-
Bocker, S.1
Rasche, F.2
-
13
-
-
79954545526
-
An introduction to biological nuclear magnetic resonance spectroscopy
-
doi:10.1111/j.1469-185X.2010.00157.x
-
Bothwell JH, Griffin JL (2011) An introduction to biological nuclear magnetic resonance spectroscopy. Biol Rev Camb Philos Soc 86: 493-510. doi: 10. 1111/j. 1469-185X. 2010. 00157. x.
-
(2011)
Biol Rev Camb Philos Soc
, vol.86
, pp. 493-510
-
-
Bothwell, J.H.1
Griffin, J.L.2
-
14
-
-
53749101844
-
Metabolome analysis of biosynthetic mutants reveals a diversity of metabolic changes and allows identification of a large number of new compounds in Arabidopsis
-
doi:10.1104/pp.108.117754
-
Bottcher C, von Roepenack-Lahaye E, Schmidt J, Schmotz C, Neumann S, Scheel D, Clemens S (2008) Metabolome analysis of biosynthetic mutants reveals a diversity of metabolic changes and allows identification of a large number of new compounds in Arabidopsis. Plant Physiol 147: 2107-2120. doi: 10. 1104/pp. 108. 117754.
-
(2008)
Plant Physiol
, vol.147
, pp. 2107-2120
-
-
Bottcher, C.1
von Roepenack-Lahaye, E.2
Schmidt, J.3
Schmotz, C.4
Neumann, S.5
Scheel, D.6
Clemens, S.7
-
15
-
-
33745728711
-
MET-IDEA: data extraction tool for mass spectrometry-based metabolomics
-
doi:10.1021/ac0521596
-
Broeckling CD, Reddy IR, Duran AL, Zhao X, Sumner LW (2006) MET-IDEA: data extraction tool for mass spectrometry-based metabolomics. Anal Chem 78: 4334-4341. doi: 10. 1021/ac0521596.
-
(2006)
Anal Chem
, vol.78
, pp. 4334-4341
-
-
Broeckling, C.D.1
Reddy, I.R.2
Duran, A.L.3
Zhao, X.4
Sumner, L.W.5
-
16
-
-
55749105106
-
Enrichment of tomato fruit with health-promoting anthocyanins by expression of select transcription factors
-
doi:10.1038/nbt.1506
-
Butelli E, Titta L, Giorgio M, Mock HP, Matros A, Peterek S, Schijlen EG, Hall RD, Bovy AG, Luo J, Martin C (2008) Enrichment of tomato fruit with health-promoting anthocyanins by expression of select transcription factors. Nat Biotechnol 26: 1301-1308. doi: 10. 1038/nbt. 1506.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1301-1308
-
-
Butelli, E.1
Titta, L.2
Giorgio, M.3
Mock, H.P.4
Matros, A.5
Peterek, S.6
Schijlen, E.G.7
Hall, R.D.8
Bovy, A.G.9
Luo, J.10
Martin, C.11
-
17
-
-
77955396600
-
The MetabolomeExpress Project: enabling web-based processing, analysis and transparent dissemination of GC/MS metabolomics datasets
-
doi:10.1186/1471-2105-11-376
-
Carroll AJ, Badger MR, Harvey Millar A (2010) The MetabolomeExpress Project: enabling web-based processing, analysis and transparent dissemination of GC/MS metabolomics datasets. BMC Bioinform 11: 376. doi: 10. 1186/1471-2105-11-376.
-
(2010)
BMC Bioinform
, vol.11
, pp. 376
-
-
Carroll, A.J.1
Badger, M.R.2
Harvey Millar, A.3
-
18
-
-
26444548613
-
Hierarchical metabolomics demonstrates substantial compositional similarity between genetically modified and conventional potato crops
-
doi:10.1073/pnas.0503955102
-
Catchpole GS, Beckmann M, Enot DP, Mondhe M, Zywicki B, Taylor J, Hardy N, Smith A, King RD, Kell DB, Fiehn O, Draper J (2005) Hierarchical metabolomics demonstrates substantial compositional similarity between genetically modified and conventional potato crops. Proc Natl Acad Sci USA 102: 14458-14462. doi: 10. 1073/pnas. 0503955102.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 14458-14462
-
-
Catchpole, G.S.1
Beckmann, M.2
Enot, D.P.3
Mondhe, M.4
Zywicki, B.5
Taylor, J.6
Hardy, N.7
Smith, A.8
King, R.D.9
Kell, D.B.10
Fiehn, O.11
Draper, J.12
-
19
-
-
78349288489
-
Understanding the evolution of defense metabolites in Arabidopsis thaliana using genome-wide association mapping
-
doi:10.1534/genetics.109.108522
-
Chan EK, Rowe HC, Kliebenstein DJ (2010) Understanding the evolution of defense metabolites in Arabidopsis thaliana using genome-wide association mapping. Genetics 185: 991-1007. doi: 10. 1534/genetics. 109. 108522.
-
(2010)
Genetics
, vol.185
, pp. 991-1007
-
-
Chan, E.K.1
Rowe, H.C.2
Kliebenstein, D.J.3
-
20
-
-
77955704591
-
Peroxisomal hydrogen peroxide is coupled to biotic defense responses by ISOCHORISMATE SYNTHASE1 in a daylength-related manner
-
doi:10.1104/pp.110.153957
-
Chaouch S, Queval G, Vanderauwera S, Mhamdi A, Vandorpe M, Langlois-Meurinne M, van Breusegem F, Saindrenan P, Noctor G (2010) Peroxisomal hydrogen peroxide is coupled to biotic defense responses by ISOCHORISMATE SYNTHASE1 in a daylength-related manner. Plant Physiol 153: 1692-1705. doi: 10. 1104/pp. 110. 153957.
-
(2010)
Plant Physiol
, vol.153
, pp. 1692-1705
-
-
Chaouch, S.1
Queval, G.2
Vanderauwera, S.3
Mhamdi, A.4
Vandorpe, M.5
Langlois-Meurinne, M.6
van Breusegem, F.7
Saindrenan, P.8
Noctor, G.9
-
21
-
-
77749330381
-
Statistical indices for simultaneous large-scale metabolite detections for a single NMR spectrum
-
doi:10.1021/ac9022023
-
Chikayama E, Sekiyama Y, Okamoto M, Nakanishi Y, Tsuboi Y, Akiyama K, Saito K, Shinozaki K, Kikuchi J (2010) Statistical indices for simultaneous large-scale metabolite detections for a single NMR spectrum. Anal Chem 82: 1653-1658. doi: 10. 1021/ac9022023.
-
(2010)
Anal Chem
, vol.82
, pp. 1653-1658
-
-
Chikayama, E.1
Sekiyama, Y.2
Okamoto, M.3
Nakanishi, Y.4
Tsuboi, Y.5
Akiyama, K.6
Saito, K.7
Shinozaki, K.8
Kikuchi, J.9
-
22
-
-
33646198860
-
Pharmaco-metabonomic phenotyping and personalized drug treatment
-
doi:10.1038/nature04648
-
Clayton TA, Lindon JC, Cloarec O, Antti H, Charuel C, Hanton G, Provost JP, Le Net JL, Baker D, Walley RJ, Everett JR, Nicholson JK (2006) Pharmaco-metabonomic phenotyping and personalized drug treatment. Nature 440: 1073-1077. doi: 10. 1038/nature04648.
-
(2006)
Nature
, vol.440
, pp. 1073-1077
-
-
Clayton, T.A.1
Lindon, J.C.2
Cloarec, O.3
Antti, H.4
Charuel, C.5
Hanton, G.6
Provost, J.P.7
Le Net, J.L.8
Baker, D.9
Walley, R.J.10
Everett, J.R.11
Nicholson, J.K.12
-
23
-
-
34247466401
-
Tools for computational processing of LC-MS datasets: a user's perspective
-
doi:10.1016/j.cmpb.2007.03.001
-
Codrea MC, Jimenez CR, Heringa J, Marchiori E (2007) Tools for computational processing of LC-MS datasets: a user's perspective. Comput Methods Programs Biomed 86: 281-290. doi: 10. 1016/j. cmpb. 2007. 03. 001.
-
(2007)
Comput Methods Programs Biomed
, vol.86
, pp. 281-290
-
-
Codrea, M.C.1
Jimenez, C.R.2
Heringa, J.3
Marchiori, E.4
-
24
-
-
77949509105
-
Tryptophan-derived metabolites are required for antifungal defense in the Arabidopsis mlo2 mutant
-
doi: 10. 1104/pp. 109. 147660
-
Consonni C, Bednarek P, Humphry M, Francocci F, Ferrari S, Harzen A, Ver Loren van Themaat E, Panstruga R (2010) Tryptophan-derived metabolites are required for antifungal defense in the Arabidopsis mlo2 mutant. Plant Physiol 152: 1544-1561. doi: 10. 1104/pp. 109. 147660.
-
(2010)
Plant Physiol
, vol.152
, pp. 1544-1561
-
-
Consonni, C.1
Bednarek, P.2
Humphry, M.3
Francocci, F.4
Ferrari, S.5
Harzen, A.6
van Ver Loren Themaat, E.7
Panstruga, R.8
-
25
-
-
57749200993
-
Metabolomic and flux-balance analysis of age-related decline of hypoxia tolerance in Drosophila muscle tissue
-
doi:10.1038/msb.2008.71
-
Coquin L, Feala JD, McCulloch AD, Paternostro G (2008) Metabolomic and flux-balance analysis of age-related decline of hypoxia tolerance in Drosophila muscle tissue. Mol Syst Biol 4: 233. doi: 10. 1038/msb. 2008. 71.
-
(2008)
Mol Syst Biol
, vol.4
, pp. 233
-
-
Coquin, L.1
Feala, J.D.2
McCulloch, A.D.3
Paternostro, G.4
-
26
-
-
38949178155
-
Metabolite identification via the Madison Metabolomics Consortium Database
-
doi:10.1038/nbt0208-162
-
Cui Q, Lewis IA, Hegeman AD, Anderson ME, Li J, Schulte CF, Westler WM, Eghbalnia HR, Sussman MR, Markley JL (2008) Metabolite identification via the Madison Metabolomics Consortium Database. Nat Biotechnol 26: 162-164. doi: 10. 1038/nbt0208-162.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 162-164
-
-
Cui, Q.1
Lewis, I.A.2
Hegeman, A.D.3
Anderson, M.E.4
Li, J.5
Schulte, C.F.6
Westler, W.M.7
Eghbalnia, H.R.8
Sussman, M.R.9
Markley, J.L.10
-
27
-
-
34248512719
-
Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry
-
doi:10.1038/nprot.2007.95
-
De Vos RC, Moco S, Lommen A, Keurentjes JJ, Bino RJ, Hall RD (2007) Untargeted large-scale plant metabolomics using liquid chromatography coupled to mass spectrometry. Nat Protoc 2: 778-791. doi: 10. 1038/nprot. 2007. 95.
-
(2007)
Nat Protoc
, vol.2
, pp. 778-791
-
-
de Vos, R.C.1
Moco, S.2
Lommen, A.3
Keurentjes, J.J.4
Bino, R.J.5
Hall, R.D.6
-
28
-
-
0037371971
-
Phytochemistry meets genome analysis, and beyond
-
doi:10.1016/S0031-9422(02)00712-4
-
Dixon RA, Strack D (2003) Phytochemistry meets genome analysis, and beyond. Phytochemistry 62: 815-816. doi: 10. 1016/S0031-9422(02)00712-4.
-
(2003)
Phytochemistry
, vol.62
, pp. 815-816
-
-
Dixon, R.A.1
Strack, D.2
-
29
-
-
33845612720
-
Applications of metabolomics in agriculture
-
doi:10.1021/jf061218t
-
Dixon RA, Gang DR, Charlton AJ, Fiehn O, Kuiper HA, Reynolds TL, Tjeerdema RS, Jeffery EH, German JB, Ridley WP, Seiber JN (2006) Applications of metabolomics in agriculture. J Agric Food Chem 54: 8984-8994. doi: 10. 1021/jf061218t.
-
(2006)
J Agric Food Chem
, vol.54
, pp. 8984-8994
-
-
Dixon, R.A.1
Gang, D.R.2
Charlton, A.J.3
Fiehn, O.4
Kuiper, H.A.5
Reynolds, T.L.6
Tjeerdema, R.S.7
Jeffery, E.H.8
German, J.B.9
Ridley, W.P.10
Seiber, J.N.11
-
30
-
-
42449122308
-
Current trends and future requirements for the mass spectrometric investigation of microbial, mammalian and plant metabolomes
-
doi:10.1088/1478-3975/5/1/011001
-
Dunn WB (2008) Current trends and future requirements for the mass spectrometric investigation of microbial, mammalian and plant metabolomes. Phys Biol 5: 11001. doi: 10. 1088/1478-3975/5/1/011001.
-
(2008)
Phys Biol
, vol.5
, pp. 11001
-
-
Dunn, W.B.1
-
31
-
-
36549081975
-
Advances of high-resolution NMR techniques in the structural and metabolic analysis of plant biochemistry
-
doi:10.1016/j.phytochem.2007.09.028
-
Eisenreich W, Bacher A (2007) Advances of high-resolution NMR techniques in the structural and metabolic analysis of plant biochemistry. Phytochemistry 68: 2799-2815. doi: 10. 1016/j. phytochem. 2007. 09. 028.
-
(2007)
Phytochemistry
, vol.68
, pp. 2799-2815
-
-
Eisenreich, W.1
Bacher, A.2
-
32
-
-
34547556301
-
LIPID MAPS online tools for lipid research
-
doi:10.1093/nar/gkm324
-
Fahy E, Sud M, Cotter D, Subramaniam S (2007) LIPID MAPS online tools for lipid research. Nucleic Acids Res 35: W606-W612. doi: 10. 1093/nar/gkm324.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Fahy, E.1
Sud, M.2
Cotter, D.3
Subramaniam, S.4
-
33
-
-
79958765503
-
NMR-based stable isotope resolved metabolomics in systems biochemistry
-
doi:10.1007/s10858-011-9484-6
-
Fan TW, Lane AN (2011) NMR-based stable isotope resolved metabolomics in systems biochemistry. J Biomol NMR 49: 267-280. doi: 10. 1007/s10858-011-9484-6.
-
(2011)
J Biomol NMR
, vol.49
, pp. 267-280
-
-
Fan, T.W.1
Lane, A.N.2
-
34
-
-
38949123203
-
Metabolomics reveals novel pathways and differential mechanistic and elicitor-specific responses in phenylpropanoid and isoflavonoid biosynthesis in Medicago truncatula cell cultures
-
doi:10.1104/pp.107.108431
-
Farag MA, Huhman DV, Dixon RA, Sumner LW (2008) Metabolomics reveals novel pathways and differential mechanistic and elicitor-specific responses in phenylpropanoid and isoflavonoid biosynthesis in Medicago truncatula cell cultures. Plant Physiol 146: 387-402. doi: 10. 1104/pp. 107. 108431.
-
(2008)
Plant Physiol
, vol.146
, pp. 387-402
-
-
Farag, M.A.1
Huhman, D.V.2
Dixon, R.A.3
Sumner, L.W.4
-
35
-
-
70350637376
-
Integrated metabolite and transcript profiling identify a biosynthetic mechanism for hispidol in Medicago truncatula cell cultures
-
doi:10.1104/pp.109.141481
-
Farag MA, Deavours BE, de Fatima A, Naoumkina M, Dixon RA, Sumner LW (2009) Integrated metabolite and transcript profiling identify a biosynthetic mechanism for hispidol in Medicago truncatula cell cultures. Plant Physiol 151: 1096-1113. doi: 10. 1104/pp. 109. 141481.
-
(2009)
Plant Physiol
, vol.151
, pp. 1096-1113
-
-
Farag, M.A.1
Deavours, B.E.2
de Fatima, A.3
Naoumkina, M.4
Dixon, R.A.5
Sumner, L.W.6
-
36
-
-
58149330201
-
Metabolomics-assisted breeding: a viable option for crop improvement?
-
doi:10.1016/j.tig.2008.10.010
-
Fernie AR, Schauer N (2009) Metabolomics-assisted breeding: a viable option for crop improvement? Trends Genet 25: 39-48. doi: 10. 1016/j. tig. 2008. 10. 010.
-
(2009)
Trends Genet
, vol.25
, pp. 39-48
-
-
Fernie, A.R.1
Schauer, N.2
-
38
-
-
0036007687
-
Metabolomics-the link between genotypes and phenotypes
-
doi:10.1023/A:1013713905833
-
Fiehn O (2002) Metabolomics-the link between genotypes and phenotypes. Plant Mol Biol 48: 155-171. doi: 10. 1023/A: 1013713905833.
-
(2002)
Plant Mol Biol
, vol.48
, pp. 155-171
-
-
Fiehn, O.1
-
39
-
-
0033757963
-
Metabolite profiling for plant functional genomics
-
doi:10.1038/81137
-
Fiehn O, Kopka J, Dörmann P, Altmann T, Trethewey RN, Willmitzer L (2000) Metabolite profiling for plant functional genomics. Nat Biotechnol 18: 1157-1161. doi: 10. 1038/81137.
-
(2000)
Nat Biotechnol
, vol.18
, pp. 1157-1161
-
-
Fiehn, O.1
Kopka, J.2
Dörmann, P.3
Altmann, T.4
Trethewey, R.N.5
Willmitzer, L.6
-
40
-
-
34249909508
-
Ultrafast two-dimensional nuclear magnetic resonance spectroscopy of hyperpolarized solutions
-
doi:10.1038/nphys597
-
Frydman L, Blazina D (2007) Ultrafast two-dimensional nuclear magnetic resonance spectroscopy of hyperpolarized solutions. Nat Phys 3: 415-419. doi: 10. 1038/nphys597.
-
(2007)
Nat Phys
, vol.3
, pp. 415-419
-
-
Frydman, L.1
Blazina, D.2
-
41
-
-
31844447341
-
Plant metabolomics: potential for practical operation
-
doi:10.1263/jbb.100.347
-
Fukusaki E, Kobayashi A (2005) Plant metabolomics: potential for practical operation. J Biosci Bioeng 100: 347-354. doi: 10. 1263/jbb. 100. 347.
-
(2005)
J Biosci Bioeng
, vol.100
, pp. 347-354
-
-
Fukusaki, E.1
Kobayashi, A.2
-
42
-
-
66349124175
-
Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination
-
doi:10.1073/pnas.0900952106
-
Fukushima A, Kusano M, Nakamichi N, Kobayashi M, Hayashi N, Sakakibara H, Mizuno T, Saito K (2009a) Impact of clock-associated Arabidopsis pseudo-response regulators in metabolic coordination. Proc Natl Acad Sci USA 106: 7251-7256. doi: 10. 1073/pnas. 0900952106.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 7251-7256
-
-
Fukushima, A.1
Kusano, M.2
Nakamichi, N.3
Kobayashi, M.4
Hayashi, N.5
Sakakibara, H.6
Mizuno, T.7
Saito, K.8
-
43
-
-
70549112091
-
Integrated omics approaches in plant systems biology
-
doi:10.1016/j.cbpa.2009.09.022
-
Fukushima A, Kusano M, Redestig H, Arita M, Saito K (2009b) Integrated omics approaches in plant systems biology. Curr Opin Chem Biol 13: 532-538. doi: 10. 1016/j. cbpa. 2009. 09. 022.
-
(2009)
Curr Opin Chem Biol
, vol.13
, pp. 532-538
-
-
Fukushima, A.1
Kusano, M.2
Redestig, H.3
Arita, M.4
Saito, K.5
-
44
-
-
58149110910
-
High-resolution direct infusion-based mass spectrometry in combination with whole 13C metabolome isotope labeling allows unambiguous assignment of chemical sum formulas
-
doi:10.1021/ac8014627
-
Giavalisco P, Hummel J, Lisec J, Inostroza AC, Catchpole G, Willmitzer L (2008) High-resolution direct infusion-based mass spectrometry in combination with whole 13C metabolome isotope labeling allows unambiguous assignment of chemical sum formulas. Anal Chem 80: 9417-9425. doi: 10. 1021/ac8014627.
-
(2008)
Anal Chem
, vol.80
, pp. 9417-9425
-
-
Giavalisco, P.1
Hummel, J.2
Lisec, J.3
Inostroza, A.C.4
Catchpole, G.5
Willmitzer, L.6
-
45
-
-
68049083650
-
13C isotope-labeled metabolomes allowing for improved compound annotation and relative quantification in liquid chromatography-mass spectrometry-based metabolomic research
-
doi:10.1021/ac900979e
-
Giavalisco P, Kohl K, Hummel J, Seiwert B, Willmitzer L (2009) 13C isotope-labeled metabolomes allowing for improved compound annotation and relative quantification in liquid chromatography-mass spectrometry-based metabolomic research. Anal Chem 81: 6546-6551. doi: 10. 1021/ac900979e.
-
(2009)
Anal Chem
, vol.81
, pp. 6546-6551
-
-
Giavalisco, P.1
Kohl, K.2
Hummel, J.3
Seiwert, B.4
Willmitzer, L.5
-
46
-
-
33845482456
-
Genetic basis for natural variation in seed vitamin E levels in Arabidopsis thaliana
-
doi:10.1073/pnas.0606221103
-
Gilliland LU, Magallanes-Lundback M, Hemming C, Supplee A, Koornneef M, Bentsink L, Dellapenna D (2006) Genetic basis for natural variation in seed vitamin E levels in Arabidopsis thaliana. Proc Natl Acad Sci USA 103: 18834-18841. doi: 10. 1073/pnas. 0606221103.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 18834-18841
-
-
Gilliland, L.U.1
Magallanes-Lundback, M.2
Hemming, C.3
Supplee, A.4
Koornneef, M.5
Bentsink, L.6
Dellapenna, D.7
-
47
-
-
77249162211
-
Database resources in metabolomics: an overview
-
doi:10.1007/s11481-009-9157-3
-
Go EP (2010) Database resources in metabolomics: an overview. J Neuroimmune Pharmacol 5: 18-30. doi: 10. 1007/s11481-009-9157-3.
-
(2010)
J Neuroimmune Pharmacol
, vol.5
, pp. 18-30
-
-
Go, E.P.1
-
48
-
-
0037023349
-
A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)
-
doi:10.1126/science.1068275
-
Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, Glazebrook J, Sessions A, Oeller P, Varma H, Hadley D, Hutchison D, Martin C, Katagiri F, Lange BM, Moughamer T, Xia Y, Budworth P, Zhong J, Miguel T, Paszkowski U, Zhang S, Colbert M, Sun WL, Chen L, Cooper B, Park S, Wood TC, Mao L, Quail P, Wing R, Dean R, Yu Y, Zharkikh A, Shen R, Sahasrabudhe S, Thomas A, Cannings R, Gutin A, Pruss D, Reid J, Tavtigian S, Mitchell J, Eldredge G, Scholl T, Miller RM, Bhatnagar S, Adey N, Rubano T, Tusneem N, Robinson R, Feldhaus J, Macalma T, Oliphant A, Briggs S (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. japonica). Science 296: 92-100. doi: 10. 1126/science. 1068275.
-
(2002)
Science
, vol.296
, pp. 92-100
-
-
Goff, S.A.1
Ricke, D.2
Lan, T.H.3
Presting, G.4
Wang, R.5
Dunn, M.6
Glazebrook, J.7
Sessions, A.8
Oeller, P.9
Varma, H.10
Hadley, D.11
Hutchison, D.12
Martin, C.13
Katagiri, F.14
Lange, B.M.15
Moughamer, T.16
Xia, Y.17
Budworth, P.18
Zhong, J.19
Miguel, T.20
Paszkowski, U.21
Zhang, S.22
Colbert, M.23
Sun, W.L.24
Chen, L.25
Cooper, B.26
Park, S.27
Wood, T.C.28
Mao, L.29
Quail, P.30
Wing, R.31
Dean, R.32
Yu, Y.33
Zharkikh, A.34
Shen, R.35
Sahasrabudhe, S.36
Thomas, A.37
Cannings, R.38
Gutin, A.39
Pruss, D.40
Reid, J.41
Tavtigian, S.42
Mitchell, J.43
Eldredge, G.44
Scholl, T.45
Miller, R.M.46
Bhatnagar, S.47
Adey, N.48
Rubano, T.49
Tusneem, N.50
Robinson, R.51
Feldhaus, J.52
Macalma, T.53
Oliphant, A.54
Briggs, S.55
more..
-
49
-
-
34848899790
-
Development of a two-step screening ESI-TOF-MS method for rapid determination of significant stress-induced metabolome modifications in plant leaf extracts: the wound response in Arabidopsis thaliana as a case study
-
doi:10.1002/jssc.200700143
-
Grata E, Boccard J, Glauser G, Carrupt PA, Farmer EE, Wolfender JL, Rudaz S (2007) Development of a two-step screening ESI-TOF-MS method for rapid determination of significant stress-induced metabolome modifications in plant leaf extracts: the wound response in Arabidopsis thaliana as a case study. J Sep Sci 30: 2268-2278. doi: 10. 1002/jssc. 200700143.
-
(2007)
J Sep Sci
, vol.30
, pp. 2268-2278
-
-
Grata, E.1
Boccard, J.2
Glauser, G.3
Carrupt, P.A.4
Farmer, E.E.5
Wolfender, J.L.6
Rudaz, S.7
-
50
-
-
77955027032
-
Targeted metabolomics for biomarker discovery
-
doi:10.1002/anie.200905579
-
Griffiths WJ, Koal T, Wang Y, Kohl M, Enot DP, Deigner HP (2010) Targeted metabolomics for biomarker discovery. Angew Chem 49: 5426-5445. doi: 10. 1002/anie. 200905579.
-
(2010)
Angew Chem
, vol.49
, pp. 5426-5445
-
-
Griffiths, W.J.1
Koal, T.2
Wang, Y.3
Kohl, M.4
Enot, D.P.5
Deigner, H.P.6
-
51
-
-
53749090789
-
1H nuclear magnetic resonance metabolite profiling as a functional genomics platform to investigate alkaloid biosynthesis in opium poppy
-
doi:10.1104/pp.108.120493
-
1H nuclear magnetic resonance metabolite profiling as a functional genomics platform to investigate alkaloid biosynthesis in opium poppy. Plant Physiol 147: 1805-1821. doi: 10. 1104/pp. 108. 120493.
-
(2008)
Plant Physiol
, vol.147
, pp. 1805-1821
-
-
Hagel, J.M.1
Weljie, A.M.2
Vogel, H.J.3
Facchini, P.J.4
-
52
-
-
33645070537
-
Plant metabolomics: from holistic hope, to hype, to hot topic
-
doi:10.1111/j.1469-8137.2005.01632.x
-
Hall RD (2006) Plant metabolomics: from holistic hope, to hype, to hot topic. New Phytol 169: 453-468. doi: 10. 1111/j. 1469-8137. 2005. 01632. x.
-
(2006)
New Phytol
, vol.169
, pp. 453-468
-
-
Hall, R.D.1
-
53
-
-
33746725437
-
Pressure-assisted capillary electrophoresis mass spectrometry using combination of polarity reversion and electroosmotic flow for metabolomics anion analysis
-
doi:10.1263/jbb.101.403
-
Harada K, Fukusaki E, Kobayashi A (2006) Pressure-assisted capillary electrophoresis mass spectrometry using combination of polarity reversion and electroosmotic flow for metabolomics anion analysis. J Biosci Bioeng 101: 403-409. doi: 10. 1263/jbb. 101. 403.
-
(2006)
J Biosci Bioeng
, vol.101
, pp. 403-409
-
-
Harada, K.1
Fukusaki, E.2
Kobayashi, A.3
-
54
-
-
34548739008
-
Stable isotope assisted assignment of elemental compositions for metabolomics
-
doi:10.1021/ac070346t
-
Hegeman AD, Schulte CF, Cui Q, Lewis IA, Huttlin EL, Eghbalnia H, Harms AC, Ulrich EL, Markley JL, Sussman MR (2007) Stable isotope assisted assignment of elemental compositions for metabolomics. Anal Chem 79: 6912-6921. doi: 10. 1021/ac070346t.
-
(2007)
Anal Chem
, vol.79
, pp. 6912-6921
-
-
Hegeman, A.D.1
Schulte, C.F.2
Cui, Q.3
Lewis, I.A.4
Huttlin, E.L.5
Eghbalnia, H.6
Harms, A.C.7
Ulrich, E.L.8
Markley, J.L.9
Sussman, M.R.10
-
55
-
-
3042750616
-
Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana
-
doi:10.1073/pnas.0611629104
-
Hirai MY, Yano M, Goodenowe DB, Kanaya S, Kimura T, Awazuhara M, Arita M, Fujiwara T, Saito K (2004) Integration of transcriptomics and metabolomics for understanding of global responses to nutritional stresses in Arabidopsis thaliana. Proc Natl Acad Sci USA 101: 10205-10210. doi: 10. 1073/pnas. 0611629104.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 10205-10210
-
-
Hirai, M.Y.1
Yano, M.2
Goodenowe, D.B.3
Kanaya, S.4
Kimura, T.5
Awazuhara, M.6
Arita, M.7
Fujiwara, T.8
Saito, K.9
-
56
-
-
21844472259
-
Elucidation of gene-to-gene and metabolite-to-gene networks in Arabidopsis by integration of metabolomics and transcriptomics
-
doi:10.1074/jbc.M502332200
-
Hirai MY, Klein M, Fujikawa Y, Yano M, Goodenowe DB, Yamazaki Y, Kanaya S, Nakamura Y, Kitayama M, Suzuki H, Sakurai N, Shibata D, Tokuhisa J, Reichelt M, Gershenzon J, Papenbrock J, Saito K (2005) Elucidation of gene-to-gene and metabolite-to-gene networks in Arabidopsis by integration of metabolomics and transcriptomics. J Biol Chem 280: 25590-25595. doi: 10. 1074/jbc. M502332200.
-
(2005)
J Biol Chem
, vol.280
, pp. 25590-25595
-
-
Hirai, M.Y.1
Klein, M.2
Fujikawa, Y.3
Yano, M.4
Goodenowe, D.B.5
Yamazaki, Y.6
Kanaya, S.7
Nakamura, Y.8
Kitayama, M.9
Suzuki, H.10
Sakurai, N.11
Shibata, D.12
Tokuhisa, J.13
Reichelt, M.14
Gershenzon, J.15
Papenbrock, J.16
Saito, K.17
-
57
-
-
34547526914
-
Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis
-
doi:10.1073/pnas.0611629104
-
Hirai MY, Sugiyama K, Sawada Y, Tohge T, Obayashi T, Suzuki A, Araki R, Sakurai N, Suzuki H, Aoki K, Goda H, Nishizawa OI, Shibata D, Saito K (2007) Omics-based identification of Arabidopsis Myb transcription factors regulating aliphatic glucosinolate biosynthesis. Proc Natl Acad Sci USA 104: 6478-6483. doi: 10. 1073/pnas. 0611629104.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 6478-6483
-
-
Hirai, M.Y.1
Sugiyama, K.2
Sawada, Y.3
Tohge, T.4
Obayashi, T.5
Suzuki, A.6
Araki, R.7
Sakurai, N.8
Suzuki, H.9
Aoki, K.10
Goda, H.11
Nishizawa, O.I.12
Shibata, D.13
Saito, K.14
-
58
-
-
77954439868
-
MassBank: a public repository for sharing mass spectral data for life sciences
-
doi:10.1002/jms.1777
-
Horai H, Arita M, Kanaya S, Nihei Y, Ikeda T, Suwa K, Ojima Y, Tanaka K, Tanaka S, Aoshima K, Oda Y, Kakazu Y, Kusano M, Tohge T, Matsuda F, Sawada Y, Hirai MY, Nakanishi H, Ikeda K, Akimoto N, Maoka T, Takahashi H, Ara T, Sakurai N, Suzuki H, Shibata D, Neumann S, Iida T, Funatsu K, Matsuura F, Soga T, Taguchi R, Saito K, Nishioka T (2010) MassBank: a public repository for sharing mass spectral data for life sciences. J Mass Spectrom 45: 703-714. doi: 10. 1002/jms. 1777.
-
(2010)
J Mass Spectrom
, vol.45
, pp. 703-714
-
-
Horai, H.1
Arita, M.2
Kanaya, S.3
Nihei, Y.4
Ikeda, T.5
Suwa, K.6
Ojima, Y.7
Tanaka, K.8
Tanaka, S.9
Aoshima, K.10
Oda, Y.11
Kakazu, Y.12
Kusano, M.13
Tohge, T.14
Matsuda, F.15
Sawada, Y.16
Hirai, M.Y.17
Nakanishi, H.18
Ikeda, K.19
Akimoto, N.20
Maoka, T.21
Takahashi, H.22
Ara, T.23
Sakurai, N.24
Suzuki, H.25
Shibata, D.26
Neumann, S.27
Iida, T.28
Funatsu, K.29
Matsuura, F.30
Soga, T.31
Taguchi, R.32
Saito, K.33
Nishioka, T.34
more..
-
59
-
-
44349092469
-
Metabolite annotations based on the integration of mass spectral information
-
doi:10.1111/j.1365-313X.2008.03434.x
-
Iijima Y, Nakamura Y, Ogata Y, Tanaka K, Sakurai N, Suda K, Suzuki T, Suzuki H, Okazaki K, Kitayama M, Kanaya S, Aoki K, Shibata D (2008) Metabolite annotations based on the integration of mass spectral information. Plant J 54: 949-962. doi: 10. 1111/j. 1365-313X. 2008. 03434. x.
-
(2008)
Plant J
, vol.54
, pp. 949-962
-
-
Iijima, Y.1
Nakamura, Y.2
Ogata, Y.3
Tanaka, K.4
Sakurai, N.5
Suda, K.6
Suzuki, T.7
Suzuki, H.8
Okazaki, K.9
Kitayama, M.10
Kanaya, S.11
Aoki, K.12
Shibata, D.13
-
60
-
-
84907150192
-
The map-based sequence of the rice genome
-
International Rice Genome Sequencing Project, doi: 10. 1038/nature03895
-
International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436: 793-800. doi: 10. 1038/nature03895.
-
(2005)
Nature
, vol.436
, pp. 793-800
-
-
-
61
-
-
74549213109
-
Metabolome analysis of response to oxidative stress in rice suspension cells overexpressing cell death suppressor Bax inhibitor-1
-
doi:10.1093/pcp/pcp162
-
Ishikawa T, Takahara K, Hirabayashi T, Matsumura H, Fujisawa S, Terauchi R, Uchimiya H, Kawai-Yamada M (2010) Metabolome analysis of response to oxidative stress in rice suspension cells overexpressing cell death suppressor Bax inhibitor-1. Plant Cell Physiol 51: 9-20. doi: 10. 1093/pcp/pcp162.
-
(2010)
Plant Cell Physiol
, vol.51
, pp. 9-20
-
-
Ishikawa, T.1
Takahara, K.2
Hirabayashi, T.3
Matsumura, H.4
Fujisawa, S.5
Terauchi, R.6
Uchimiya, H.7
Kawai-Yamada, M.8
-
62
-
-
68149099597
-
Metabolomics reveals metabolic biomarkers of Crohn's disease
-
doi:10.1371/journal.pone.0006386
-
Jansson J, Willing B, Lucio M, Fekete A, Dicksved J, Halfvarson J, Tysk C, Schmitt-Kopplin P (2009) Metabolomics reveals metabolic biomarkers of Crohn's disease. PLoS ONE 4: e6386. doi: 10. 1371/journal. pone. 0006386.
-
(2009)
PLoS ONE
, vol.4
-
-
Jansson, J.1
Willing, B.2
Lucio, M.3
Fekete, A.4
Dicksved, J.5
Halfvarson, J.6
Tysk, C.7
Schmitt-Kopplin, P.8
-
63
-
-
1542408614
-
A strategy for identifying differences in large series of metabolomic samples analyzed by GC/MS
-
doi:10.1021/ac0352427
-
Jonsson P, Gullberg J, Nordstrom A, Kusano M, Kowalczyk M, Sjostrom M, Moritz T (2004) A strategy for identifying differences in large series of metabolomic samples analyzed by GC/MS. Anal Chem 76: 1738-1745. doi: 10. 1021/ac0352427.
-
(2004)
Anal Chem
, vol.76
, pp. 1738-1745
-
-
Jonsson, P.1
Gullberg, J.2
Nordstrom, A.3
Kusano, M.4
Kowalczyk, M.5
Sjostrom, M.6
Moritz, T.7
-
64
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
doi:10.1093/nar/gkm882
-
Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T, Yamanishi Y (2008) KEGG for linking genomes to life and the environment. Nucleic Acids Res 36: D480-D484. doi: 10. 1093/nar/gkm882.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
Hattori, M.4
Hirakawa, M.5
Itoh, M.6
Katayama, T.7
Kawashima, S.8
Okuda, S.9
Tokimatsu, T.10
Yamanishi, Y.11
-
65
-
-
33644867564
-
MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data
-
doi:10.1093/bioinformatics/btk039
-
Katajamaa M, Miettinen J, Oresic M (2006) MZmine: toolbox for processing and visualization of mass spectrometry based molecular profile data. Bioinformatics 22: 634-636. doi: 10. 1093/bioinformatics/btk039.
-
(2006)
Bioinformatics
, vol.22
, pp. 634-636
-
-
Katajamaa, M.1
Miettinen, J.2
Oresic, M.3
-
66
-
-
79953094978
-
Network quantitative trait loci mapping of circadian clock outputs identifies metabolic pathway-to-clock linkages in Arabidopsis
-
doi:10.1105/tpc.110.082065
-
Kerwin RE, Jimenez-Gomez JM, Fulop D, Harmer SL, Maloof JN, Kliebenstein DJ (2011) Network quantitative trait loci mapping of circadian clock outputs identifies metabolic pathway-to-clock linkages in Arabidopsis. Plant Cell 23: 471-485. doi: 10. 1105/tpc. 110. 082065.
-
(2011)
Plant Cell
, vol.23
, pp. 471-485
-
-
Kerwin, R.E.1
Jimenez-Gomez, J.M.2
Fulop, D.3
Harmer, S.L.4
Maloof, J.N.5
Kliebenstein, D.J.6
-
67
-
-
33745580270
-
The genetics of plant metabolism
-
doi:10.1038/ng1815
-
Keurentjes JJ, Fu J, de Vos CH, Lommen A, Hall RD, Bino RJ, van der Plas LH, Jansen RC, Vreugdenhil D, Koornneef M (2006) The genetics of plant metabolism. Nat Genet 38: 842-849. doi: 10. 1038/ng1815.
-
(2006)
Nat Genet
, vol.38
, pp. 842-849
-
-
Keurentjes, J.J.1
Fu, J.2
de Vos, C.H.3
Lommen, A.4
Hall, R.D.5
Bino, R.J.6
van der Plas, L.H.7
Jansen, R.C.8
Vreugdenhil, D.9
Koornneef, M.10
-
68
-
-
34547704068
-
Practical aspects of uniform stable isotope labeling of higher plants for heteronuclear NMR-based metabolomics
-
Kikuchi J, Hirayama T (2007) Practical aspects of uniform stable isotope labeling of higher plants for heteronuclear NMR-based metabolomics. Methods Mol Biol 358: 273-286.
-
(2007)
Methods Mol Biol
, vol.358
, pp. 273-286
-
-
Kikuchi, J.1
Hirayama, T.2
-
69
-
-
4644255326
-
Stable isotope labeling of Arabidopsis thaliana for an NMR-based metabolomics approach
-
doi:10.1093/pcp/pch117
-
Kikuchi J, Shinozaki K, Hirayama T (2004) Stable isotope labeling of Arabidopsis thaliana for an NMR-based metabolomics approach. Plant Cell Physiol 45: 1099-1104. doi: 10. 1093/pcp/pch117.
-
(2004)
Plant Cell Physiol
, vol.45
, pp. 1099-1104
-
-
Kikuchi, J.1
Shinozaki, K.2
Hirayama, T.3
-
70
-
-
33847660127
-
Time-course metabolic profiling in Arabidopsis thaliana cell cultures after salt stress treatment
-
doi:10.1093/jxb/erl216
-
Kim JK, Bamba T, Harada K, Fukusaki E, Kobayashi A (2007) Time-course metabolic profiling in Arabidopsis thaliana cell cultures after salt stress treatment. J Exp Bot 58: 415-424. doi: 10. 1093/jxb/erl216.
-
(2007)
J Exp Bot
, vol.58
, pp. 415-424
-
-
Kim, J.K.1
Bamba, T.2
Harada, K.3
Fukusaki, E.4
Kobayashi, A.5
-
71
-
-
79956103990
-
NMR-based plant metabolomics: where do we stand, where do we go?
-
doi: 10. 1016/j. tibtech. 2011. 02. 001
-
Kim HK, Choi YH, Verpoorte R (2011) NMR-based plant metabolomics: where do we stand, where do we go? Trends Biotechnol. doi: 10. 1016/j. tibtech. 2011. 02. 001.
-
(2011)
Trends Biotechnol
-
-
Kim, H.K.1
Choi, Y.H.2
Verpoorte, R.3
-
72
-
-
33646754900
-
Metabolomic database annotations via query of elemental compositions: mass accuracy is insufficient even at less than 1 ppm
-
doi:10.1186/1471-2105-7-234
-
Kind T, Fiehn O (2006) Metabolomic database annotations via query of elemental compositions: mass accuracy is insufficient even at less than 1 ppm. BMC Bioinform 7: 234. doi: 10. 1186/1471-2105-7-234.
-
(2006)
BMC Bioinform
, vol.7
, pp. 234
-
-
Kind, T.1
Fiehn, O.2
-
73
-
-
72449186517
-
FiehnLib: mass spectral and retention index libraries for metabolomics based on quadrupole and time-of-flight gas chromatography/mass spectrometry
-
doi:10.1021/ac9019522
-
Kind T, Wohlgemuth G, Lee do Y, Lu Y, Palazoglu M, Shahbaz S, Fiehn O (2009) FiehnLib: mass spectral and retention index libraries for metabolomics based on quadrupole and time-of-flight gas chromatography/mass spectrometry. Anal Chem 81: 10038-10048. doi: 10. 1021/ac9019522.
-
(2009)
Anal Chem
, vol.81
, pp. 10038-10048
-
-
Kind, T.1
Wohlgemuth, G.2
Lee do, Y.3
Lu, Y.4
Palazoglu, M.5
Shahbaz, S.6
Fiehn, O.7
-
74
-
-
69949161748
-
Advancing genetic theory and application by metabolic quantitative trait loci analysis
-
doi:10.1105/tpc.109.067611
-
Kliebenstein D (2009) Advancing genetic theory and application by metabolic quantitative trait loci analysis. Plant Cell 21: 1637-1646. doi: 10. 1105/tpc. 109. 067611.
-
(2009)
Plant Cell
, vol.21
, pp. 1637-1646
-
-
Kliebenstein, D.1
-
75
-
-
20244380782
-
GMD@CSB. DB: the Golm Metabolome Database
-
doi: 10. 1093/bioinformatics/bti236
-
Kopka J, Schauer N, Krueger S, Birkemeyer C, Usadel B, Bergmuller E, Dörmann P, Weckwerth W, Gibon Y, Stitt M, Willmitzer L, Fernie AR, Steinhauser D (2005) GMD@CSB. DB: the Golm Metabolome Database. Bioinformatics 21: 1635-1638. doi: 10. 1093/bioinformatics/bti236.
-
(2005)
Bioinformatics
, vol.21
, pp. 1635-1638
-
-
Kopka, J.1
Schauer, N.2
Krueger, S.3
Birkemeyer, C.4
Usadel, B.5
Bergmuller, E.6
Dörmann, P.7
Weckwerth, W.8
Gibon, Y.9
Stitt, M.10
Willmitzer, L.11
Fernie, A.R.12
Steinhauser, D.13
-
76
-
-
67349273062
-
From differentiating metabolites to biomarkers
-
doi:10.1007/s00216-009-2690-3
-
Koulman A, Lane GA, Harrison SJ, Volmer DA (2009) From differentiating metabolites to biomarkers. Anal Bioanal Chem 394: 663-670. doi: 10. 1007/s00216-009-2690-3.
-
(2009)
Anal Bioanal Chem
, vol.394
, pp. 663-670
-
-
Koulman, A.1
Lane, G.A.2
Harrison, S.J.3
Volmer, D.A.4
-
77
-
-
19944421389
-
Cryogenically cooled probes-a leap in NMR technology
-
doi:10.1016/j.pnmrs.2005.03.001
-
Kovacs H, Moskau D, Spraul M (2005) Cryogenically cooled probes-a leap in NMR technology. Prog Nucl Magn Reson Spectrosc 46: 131-155. doi: 10. 1016/j. pnmrs. 2005. 03. 001.
-
(2005)
Prog Nucl Magn Reson Spectrosc
, vol.46
, pp. 131-155
-
-
Kovacs, H.1
Moskau, D.2
Spraul, M.3
-
78
-
-
13244264923
-
Metabolite fingerprinting and profiling in plants using NMR
-
doi:10.1093/jxb/eri010
-
Krishnan P, Kruger NJ, Ratcliffe RG (2005) Metabolite fingerprinting and profiling in plants using NMR. J Exp Bot 56: 255-265. doi: 10. 1093/jxb/eri010.
-
(2005)
J Exp Bot
, vol.56
, pp. 255-265
-
-
Krishnan, P.1
Kruger, N.J.2
Ratcliffe, R.G.3
-
79
-
-
75249094430
-
Metabolomics analysis reveals the compositional differences of shade grown tea (Camellia sinensis L.)
-
doi: 10. 1021/jf902929h
-
Ku KM, Choi JN, Kim J, Kim JK, Yoo LG, Lee SJ, Hong YS, Lee CH (2010a) Metabolomics analysis reveals the compositional differences of shade grown tea (Camellia sinensis L.). J Agric Food Chem 58: 418-426. doi: 10. 1021/jf902929h.
-
(2010)
J Agric Food Chem
, vol.58
, pp. 418-426
-
-
Ku, K.M.1
Choi, J.N.2
Kim, J.3
Kim, J.K.4
Yoo, L.G.5
Lee, S.J.6
Hong, Y.S.7
Lee, C.H.8
-
80
-
-
75249087497
-
Application of metabolomics in the analysis of manufacturing type of pu-erh tea and composition changes with different postfermentation year
-
doi:10.1021/jf902818c
-
Ku KM, Kim J, Park HJ, Liu KH, Lee CH (2010b) Application of metabolomics in the analysis of manufacturing type of pu-erh tea and composition changes with different postfermentation year. J Agric Food Chem 58: 345-352. doi: 10. 1021/jf902818c.
-
(2010)
J Agric Food Chem
, vol.58
, pp. 345-352
-
-
Ku, K.M.1
Kim, J.2
Park, H.J.3
Liu, K.H.4
Lee, C.H.5
-
81
-
-
34447570857
-
Application of a metabolomic method combining one-dimensional and two-dimensional gas chromatography-time-of-flight/mass spectrometry to metabolic phenotyping of natural variants in rice
-
doi:10.1016/j.jchromb.2007.05.002
-
Kusano M, Fukushima A, Kobayashi M, Hayashi N, Jonsson P, Moritz T, Ebana K, Saito K (2007) Application of a metabolomic method combining one-dimensional and two-dimensional gas chromatography-time-of-flight/mass spectrometry to metabolic phenotyping of natural variants in rice. J Chromatogr B Analyt Technol Biomed Life Sci 855: 71-79. doi: 10. 1016/j. jchromb. 2007. 05. 002.
-
(2007)
J Chromatogr B Analyt Technol Biomed Life Sci
, vol.855
, pp. 71-79
-
-
Kusano, M.1
Fukushima, A.2
Kobayashi, M.3
Hayashi, N.4
Jonsson, P.5
Moritz, T.6
Ebana, K.7
Saito, K.8
-
82
-
-
79951899297
-
Covering chemical diversity of genetically-modified tomatoes using metabolomics for objective substantial equivalence assessment
-
doi:10.1371/journal.pone.0016989
-
Kusano M, Redestig H, Hirai T, Oikawa A, Matsuda F, Fukushima A, Arita M, Watanabe S, Yano M, Hiwasa-Tanase K, Ezura H, Saito K (2011a) Covering chemical diversity of genetically-modified tomatoes using metabolomics for objective substantial equivalence assessment. PLoS ONE 6: e16989. doi: 10. 1371/journal. pone. 0016989.
-
(2011)
PLoS ONE
, vol.6
-
-
Kusano, M.1
Redestig, H.2
Hirai, T.3
Oikawa, A.4
Matsuda, F.5
Fukushima, A.6
Arita, M.7
Watanabe, S.8
Yano, M.9
Hiwasa-Tanase, K.10
Ezura, H.11
Saito, K.12
-
83
-
-
79955467281
-
Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1;1 in coordinating metabolic balance in rice
-
doi:10.1111/j.1365-313X.2011.04506.x
-
Kusano M, Tabuchi M, Fukushima A, Funayama K, Diaz C, Kobayashi M, Hayashi N, Tsuchiya YN, Takahashi H, Kamata A, Yamaya T, Saito K (2011b) Metabolomics data reveal a crucial role of cytosolic glutamine synthetase 1; 1 in coordinating metabolic balance in rice. Plant J 66: 456-466. doi: 10. 1111/j. 1365-313X. 2011. 04506. x.
-
(2011)
Plant J
, vol.66
, pp. 456-466
-
-
Kusano, M.1
Tabuchi, M.2
Fukushima, A.3
Funayama, K.4
Diaz, C.5
Kobayashi, M.6
Hayashi, N.7
Tsuchiya, Y.N.8
Takahashi, H.9
Kamata, A.10
Yamaya, T.11
Saito, K.12
-
84
-
-
79960214215
-
Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to ultraviolet-B light
-
doi: 10. 1111/j. 1365-313X. 2011. 04599. x
-
Kusano M, Tohge T, Fukushima A, Kobayashi M, Hayashi N, Otsuki H, Kondou Y, Goto H, Kawashima M, Matsuda F, Niida R, Matsui M, Saito K, Fernie AR (2011c) Metabolomics reveals comprehensive reprogramming involving two independent metabolic responses of Arabidopsis to ultraviolet-B light. Plant J. doi: 10. 1111/j. 1365-313X. 2011. 04599. x.
-
(2011)
Plant J
-
-
Kusano, M.1
Tohge, T.2
Fukushima, A.3
Kobayashi, M.4
Hayashi, N.5
Otsuki, H.6
Kondou, Y.7
Goto, H.8
Kawashima, M.9
Matsuda, F.10
Niida, R.11
Matsui, M.12
Saito, K.13
Fernie, A.R.14
-
85
-
-
71049135626
-
Identification of defense compounds in Barbarea vulgaris against the herbivore Phyllotreta nemorum by an ecometabolomic approach
-
doi:10.1104/pp.109.136952
-
Kuzina V, Ekstrom CT, Andersen SB, Nielsen JK, Olsen CE, Bak S (2009) Identification of defense compounds in Barbarea vulgaris against the herbivore Phyllotreta nemorum by an ecometabolomic approach. Plant Physiol 151: 1977-1990. doi: 10. 1104/pp. 109. 136952.
-
(2009)
Plant Physiol
, vol.151
, pp. 1977-1990
-
-
Kuzina, V.1
Ekstrom, C.T.2
Andersen, S.B.3
Nielsen, J.K.4
Olsen, C.E.5
Bak, S.6
-
87
-
-
67650173425
-
Identification of chlorogenic acid as a resistance factor for thrips in Chrysanthemum
-
doi:10.1104/pp.109.138131
-
Leiss KA, Maltese F, Choi YH, Verpoorte R, Klinkhamer PG (2009) Identification of chlorogenic acid as a resistance factor for thrips in Chrysanthemum. Plant Physiol 150: 1567-1575. doi: 10. 1104/pp. 109. 138131.
-
(2009)
Plant Physiol
, vol.150
, pp. 1567-1575
-
-
Leiss, K.A.1
Maltese, F.2
Choi, Y.H.3
Verpoorte, R.4
Klinkhamer, P.G.5
-
88
-
-
3242879742
-
Metabonomics: systems biology in pharmaceutical research and development
-
Lindon JC, Holmes E, Nicholson JK (2004) Metabonomics: systems biology in pharmaceutical research and development. Curr Opin Mol Ther 6: 265-272.
-
(2004)
Curr Opin Mol Ther
, vol.6
, pp. 265-272
-
-
Lindon, J.C.1
Holmes, E.2
Nicholson, J.K.3
-
89
-
-
40549123412
-
Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations
-
doi:10.1111/j.1365-313X.2007.03383.x
-
Lisec J, Meyer RC, Steinfath M, Redestig H, Becher M, Witucka-Wall H, Fiehn O, Torjek O, Selbig J, Altmann T, Willmitzer L (2008) Identification of metabolic and biomass QTL in Arabidopsis thaliana in a parallel analysis of RIL and IL populations. Plant J 53: 960-972. doi: 10. 1111/j. 1365-313X. 2007. 03383. x.
-
(2008)
Plant J
, vol.53
, pp. 960-972
-
-
Lisec, J.1
Meyer, R.C.2
Steinfath, M.3
Redestig, H.4
Becher, M.5
Witucka-Wall, H.6
Fiehn, O.7
Torjek, O.8
Selbig, J.9
Altmann, T.10
Willmitzer, L.11
-
90
-
-
0034863457
-
Expression of Clarkia S-linalool synthase in transgenic petunia plants results in the accumulation of S-linalyl-beta-d-glucopyranoside
-
doi:10.1046/j.1365-313x.2001.01097.x
-
Lucker J, Bouwmeester HJ, Schwab W, Blaas J, van der Plas LH, Verhoeven HA (2001) Expression of Clarkia S-linalool synthase in transgenic petunia plants results in the accumulation of S-linalyl-beta-d-glucopyranoside. Plant J 27: 315-324. doi: 10. 1046/j. 1365-313x. 2001. 01097. x.
-
(2001)
Plant J
, vol.27
, pp. 315-324
-
-
Lucker, J.1
Bouwmeester, H.J.2
Schwab, W.3
Blaas, J.4
van der Plas, L.H.5
Verhoeven, H.A.6
-
91
-
-
38449113492
-
New bioinformatics resources for metabolomics
-
Markley JL, Anderson ME, Cui Q, Eghbalnia HR, Lewis IA, Hegeman AD, Li J, Schulte CF, Sussman MR, Westler WM, Ulrich EL, Zolnai Z (2007) New bioinformatics resources for metabolomics. Pac Symp Biocomput 12: 157-168.
-
(2007)
Pac Symp Biocomput
, vol.12
, pp. 157-168
-
-
Markley, J.L.1
Anderson, M.E.2
Cui, Q.3
Eghbalnia, H.R.4
Lewis, I.A.5
Hegeman, A.D.6
Li, J.7
Schulte, C.F.8
Sussman, M.R.9
Westler, W.M.10
Ulrich, E.L.11
Zolnai, Z.12
-
92
-
-
58849117570
-
MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites
-
doi:10.1111/j.1365-313X.2008.03705.x
-
Matsuda F, Yonekura-Sakakibara K, Niida R, Kuromori T, Shinozaki K, Saito K (2009) MS/MS spectral tag-based annotation of non-targeted profile of plant secondary metabolites. Plant J 57: 555-577. doi: 10. 1111/j. 1365-313X. 2008. 03705. x.
-
(2009)
Plant J
, vol.57
, pp. 555-577
-
-
Matsuda, F.1
Yonekura-Sakakibara, K.2
Niida, R.3
Kuromori, T.4
Shinozaki, K.5
Saito, K.6
-
93
-
-
75949126260
-
AtMetExpress development: a phytochemical atlas of Arabidopsis development
-
doi:10.1104/pp.109.148031
-
Matsuda F, Hirai MY, Sasaki E, Akiyama K, Yonekura-Sakakibara K, Provart NJ, Sakurai T, Shimada Y, Saito K (2010) AtMetExpress development: a phytochemical atlas of Arabidopsis development. Plant Physiol 152: 566-578. doi: 10. 1104/pp. 109. 148031.
-
(2010)
Plant Physiol
, vol.152
, pp. 566-578
-
-
Matsuda, F.1
Hirai, M.Y.2
Sasaki, E.3
Akiyama, K.4
Yonekura-Sakakibara, K.5
Provart, N.J.6
Sakurai, T.7
Shimada, Y.8
Saito, K.9
-
94
-
-
15044341146
-
NMR analysis of plant nitrogen metabolism
-
doi:10.1007/s11120-004-2081-8
-
Mesnard F, Ratcliffe RG (2005) NMR analysis of plant nitrogen metabolism. Photosynth Res 83: 163-180. doi: 10. 1007/s11120-004-2081-8.
-
(2005)
Photosynth Res
, vol.83
, pp. 163-180
-
-
Mesnard, F.1
Ratcliffe, R.G.2
-
95
-
-
34248377833
-
The metabolic signature related to high plant growth rate in Arabidopsis thaliana
-
doi:10.1073/pnas.0609709104
-
Meyer RC, Steinfath M, Lisec J, Becher M, Witucka-Wall H, Torjek O, Fiehn O, Eckardt A, Willmitzer L, Selbig J, Altmann T (2007) The metabolic signature related to high plant growth rate in Arabidopsis thaliana. Proc Natl Acad Sci USA 104: 4759-4764. doi: 10. 1073/pnas. 0609709104.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 4759-4764
-
-
Meyer, R.C.1
Steinfath, M.2
Lisec, J.3
Becher, M.4
Witucka-Wall, H.5
Torjek, O.6
Fiehn, O.7
Eckardt, A.8
Willmitzer, L.9
Selbig, J.10
Altmann, T.11
-
96
-
-
77954718419
-
Cytosolic NADP-dependent isocitrate dehydrogenase contributes to redox homeostasis and the regulation of pathogen responses in Arabidopsis leaves
-
doi:10.1111/j.1365-3040.2010.02133.x
-
Mhamdi A, Mauve C, Gouia H, Saindrenan P, Hodges M, Noctor G (2010) Cytosolic NADP-dependent isocitrate dehydrogenase contributes to redox homeostasis and the regulation of pathogen responses in Arabidopsis leaves. Plant Cell Environ 33: 1112-1123. doi: 10. 1111/j. 1365-3040. 2010. 02133. x.
-
(2010)
Plant Cell Environ
, vol.33
, pp. 1112-1123
-
-
Mhamdi, A.1
Mauve, C.2
Gouia, H.3
Saindrenan, P.4
Hodges, M.5
Noctor, G.6
-
97
-
-
67649875655
-
Measurement of internal body time by blood metabolomics
-
doi:10.1073/pnas.0900617106
-
Minami Y, Kasukawa T, Kakazu Y, Iigo M, Sugimoto M, Ikeda S, Yasui A, van der Horst GT, Soga T, Ueda HR (2009) Measurement of internal body time by blood metabolomics. Proc Natl Acad Sci USA 106: 9890-9895. doi: 10. 1073/pnas. 0900617106.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 9890-9895
-
-
Minami, Y.1
Kasukawa, T.2
Kakazu, Y.3
Iigo, M.4
Sugimoto, M.5
Ikeda, S.6
Yasui, A.7
van der Horst, G.T.8
Soga, T.9
Ueda, H.R.10
-
98
-
-
77954184244
-
A strategy for the determination of the elemental composition by Fourier transform ion cyclotron resonance mass spectrometry based on isotopic peak ratios
-
doi:10.1021/ac902931x
-
Miura D, Tsuji Y, Takahashi K, Wariishi H, Saito K (2010) A strategy for the determination of the elemental composition by Fourier transform ion cyclotron resonance mass spectrometry based on isotopic peak ratios. Anal Chem 82: 5887-5891. doi: 10. 1021/ac902931x.
-
(2010)
Anal Chem
, vol.82
, pp. 5887-5891
-
-
Miura, D.1
Tsuji, Y.2
Takahashi, K.3
Wariishi, H.4
Saito, K.5
-
99
-
-
33747137944
-
A liquid chromatography-mass spectrometry-based metabolome database for tomato
-
doi:10.1104/pp.106.078428
-
Moco S, Bino RJ, Vorst O, Verhoeven HA, de Groot J, van Beek TA, Vervoort J, de Vos CH (2006) A liquid chromatography-mass spectrometry-based metabolome database for tomato. Plant Physiol 141: 1205-1218. doi: 10. 1104/pp. 106. 078428.
-
(2006)
Plant Physiol
, vol.141
, pp. 1205-1218
-
-
Moco, S.1
Bino, R.J.2
Vorst, O.3
Verhoeven, H.A.4
de Groot, J.5
van Beek, T.A.6
Vervoort, J.7
de Vos, C.H.8
-
100
-
-
40049099410
-
Tissue specialization at the metabolite level is perceived during the development of tomato fruit
-
doi:10.1093/jxb/erm271
-
Moco S, Capanoglu E, Tikunov Y, Bino RJ, Boyacioglu D, Hall RD, Vervoort J, De Vos RC (2007) Tissue specialization at the metabolite level is perceived during the development of tomato fruit. J Exp Bot 58: 4131-4146. doi: 10. 1093/jxb/erm271.
-
(2007)
J Exp Bot
, vol.58
, pp. 4131-4146
-
-
Moco, S.1
Capanoglu, E.2
Tikunov, Y.3
Bino, R.J.4
Boyacioglu, D.5
Hall, R.D.6
Vervoort, J.7
de Vos, R.C.8
-
101
-
-
34748879347
-
Metabolome analysis by capillary electrophoresis-mass spectrometry
-
doi:10.1016/j.chroma.2007.02.065
-
Monton MR, Soga T (2007) Metabolome analysis by capillary electrophoresis-mass spectrometry. J Chromatogr A 1168: 237-246. doi: 10. 1016/j. chroma. 2007. 02. 065.
-
(2007)
J Chromatogr A
, vol.1168
, pp. 237-246
-
-
Monton, M.R.1
Soga, T.2
-
102
-
-
33745677702
-
Genetical metabolomics of flavonoid biosynthesis in Populus: a case study
-
doi:10.1111/j.1365-313X.2006.02786.x
-
Morreel K, Goeminne G, Storme V, Sterck L, Ralph J, Coppieters W, Breyne P, Steenackers M, Georges M, Messens E, Boerjan W (2006) Genetical metabolomics of flavonoid biosynthesis in Populus: a case study. Plant J 47: 224-237. doi: 10. 1111/j. 1365-313X. 2006. 02786. x.
-
(2006)
Plant J
, vol.47
, pp. 224-237
-
-
Morreel, K.1
Goeminne, G.2
Storme, V.3
Sterck, L.4
Ralph, J.5
Coppieters, W.6
Breyne, P.7
Steenackers, M.8
Georges, M.9
Messens, E.10
Boerjan, W.11
-
103
-
-
79957630849
-
A novel deconvolution method for modeling UDP-GlcNAc biosynthetic pathways based on 13C mass isotopologue profiles under non steady-state conditions
-
doi:10.1186/1741-7007-9-37
-
Moseley HN, Lane AN, Belshoff AC, Higashi RM, Fan TW (2011) A novel deconvolution method for modeling UDP-GlcNAc biosynthetic pathways based on 13C mass isotopologue profiles under non steady-state conditions. BMC Biol 9: 37. doi: 10. 1186/1741-7007-9-37.
-
(2011)
BMC Biol
, vol.9
, pp. 37
-
-
Moseley, H.N.1
Lane, A.N.2
Belshoff, A.C.3
Higashi, R.M.4
Fan, T.W.5
-
104
-
-
27744532654
-
Metabolite fingerprinting in transgenic Nicotiana tabacum altered by the Escherichia coli glutamate dehydrogenase gene
-
doi:10.1155/JBB.2005.198
-
Mungur R, Glass AD, Goodenow DB, Lightfoot DA (2005) Metabolite fingerprinting in transgenic Nicotiana tabacum altered by the Escherichia coli glutamate dehydrogenase gene. J Biomed Biotechnol 2005: 198-214. doi: 10. 1155/JBB. 2005. 198.
-
(2005)
J Biomed Biotechnol
, vol.2005
, pp. 198-214
-
-
Mungur, R.1
Glass, A.D.2
Goodenow, D.B.3
Lightfoot, D.A.4
-
105
-
-
67649877980
-
Metabolomics-oriented isolation and structure elucidation of 37 compounds including two anthocyanins from Arabidopsis thaliana
-
doi:10.1016/j.phytochem.2009.03.021
-
Nakabayashi R, Kusano M, Kobayashi M, Tohge T, Yonekura-Sakakibara K, Kogure N, Yamazaki M, Kitajima M, Saito K, Takayama H (2009) Metabolomics-oriented isolation and structure elucidation of 37 compounds including two anthocyanins from Arabidopsis thaliana. Phytochemistry 70: 1017-1029. doi: 10. 1016/j. phytochem. 2009. 03. 021.
-
(2009)
Phytochemistry
, vol.70
, pp. 1017-1029
-
-
Nakabayashi, R.1
Kusano, M.2
Kobayashi, M.3
Tohge, T.4
Yonekura-Sakakibara, K.5
Kogure, N.6
Yamazaki, M.7
Kitajima, M.8
Saito, K.9
Takayama, H.10
-
106
-
-
78649691609
-
A polyhedral approach for understanding flavonoid biosynthesis in Arabidopsis
-
doi:10.1016/j.nbt.2010.03.004
-
Nakabayashi R, Yamazaki M, Saito K (2010) A polyhedral approach for understanding flavonoid biosynthesis in Arabidopsis. N Biotechnol 27: 829-836. doi: 10. 1016/j. nbt. 2010. 03. 004.
-
(2010)
N Biotechnol
, vol.27
, pp. 829-836
-
-
Nakabayashi, R.1
Yamazaki, M.2
Saito, K.3
-
107
-
-
36749014563
-
Different mechanisms for phytoalexin induction by pathogen and wound signals in Medicago truncatula
-
doi:10.1073/pnas.0708697104
-
Naoumkina M, Farag MA, Sumner LW, Tang Y, Liu CJ, Dixon RA (2007) Different mechanisms for phytoalexin induction by pathogen and wound signals in Medicago truncatula. Proc Natl Acad Sci USA 104: 17909-17915. doi: 10. 1073/pnas. 0708697104.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 17909-17915
-
-
Naoumkina, M.1
Farag, M.A.2
Sumner, L.W.3
Tang, Y.4
Liu, C.J.5
Dixon, R.A.6
-
108
-
-
34547728263
-
An Introduction to the Food/Feed Safety Consensus Documents of the Task Force
-
OECD, No 14. Organization for Economic Cooperation and Development, Paris
-
OECD (2006) An Introduction to the Food/Feed Safety Consensus Documents of the Task Force. Series on the Safety of Novel Foods and Feeds, No 14. Organization for Economic Cooperation and Development, Paris, pp 7-9.
-
(2006)
Series on the Safety of Novel Foods and Feeds
, pp. 7-9
-
-
-
109
-
-
57749107460
-
A gamma-glutamyl transpeptidase-independent pathway of glutathione catabolism to glutamate via 5-oxoproline in Arabidopsis
-
doi:10.1104/pp.108.125716
-
Ohkama-Ohtsu N, Oikawa A, Zhao P, Xiang C, Saito K, Oliver DJ (2008) A gamma-glutamyl transpeptidase-independent pathway of glutathione catabolism to glutamate via 5-oxoproline in Arabidopsis. Plant Physiol 148: 1603-1613. doi: 10. 1104/pp. 108. 125716.
-
(2008)
Plant Physiol
, vol.148
, pp. 1603-1613
-
-
Ohkama-Ohtsu, N.1
Oikawa, A.2
Zhao, P.3
Xiang, C.4
Saito, K.5
Oliver, D.J.6
-
110
-
-
79251478095
-
12-oxo-phytodienoic acid-glutathione conjugate is transported into the vacuole in Arabidopsis
-
doi:10.1093/pcp/pcq181
-
Ohkama-Ohtsu N, Sasaki-Sekimoto Y, Oikawa A, Jikumaru Y, Shinoda S, Inoue E, Kamide Y, Yokoyama T, Hirai MY, Shirasu K, Kamiya Y, Oliver DJ, Saito K (2011) 12-oxo-phytodienoic acid-glutathione conjugate is transported into the vacuole in Arabidopsis. Plant Cell Physiol 52: 205-209. doi: 10. 1093/pcp/pcq181.
-
(2011)
Plant Cell Physiol
, vol.52
, pp. 205-209
-
-
Ohkama-Ohtsu, N.1
Sasaki-Sekimoto, Y.2
Oikawa, A.3
Jikumaru, Y.4
Shinoda, S.5
Inoue, E.6
Kamide, Y.7
Yokoyama, T.8
Hirai, M.Y.9
Shirasu, K.10
Kamiya, Y.11
Oliver, D.J.12
Saito, K.13
-
111
-
-
33750055741
-
Clarification of pathway-specific inhibition by Fourier transform ion cyclotron resonance/mass spectrometry-based metabolic phenotyping studies
-
doi:10.1104/pp.106.080317
-
Oikawa A, Nakamura Y, Ogura T, Kimura A, Suzuki H, Sakurai N, Shinbo Y, Shibata D, Kanaya S, Ohta D (2006) Clarification of pathway-specific inhibition by Fourier transform ion cyclotron resonance/mass spectrometry-based metabolic phenotyping studies. Plant Physiol 142: 398-413. doi: 10. 1104/pp. 106. 080317.
-
(2006)
Plant Physiol
, vol.142
, pp. 398-413
-
-
Oikawa, A.1
Nakamura, Y.2
Ogura, T.3
Kimura, A.4
Suzuki, H.5
Sakurai, N.6
Shinbo, Y.7
Shibata, D.8
Kanaya, S.9
Ohta, D.10
-
112
-
-
58149334031
-
Rice metabolomics
-
doi:10.1073/pnas.0708697104
-
Oikawa A, Matsuda F, Kusano M, Okazaki Y, Saito K (2008) Rice metabolomics. Rice 1: 63-71. doi: 10. 1073/pnas. 0708697104.
-
(2008)
Rice
, vol.1
, pp. 63-71
-
-
Oikawa, A.1
Matsuda, F.2
Kusano, M.3
Okazaki, Y.4
Saito, K.5
-
113
-
-
78049507708
-
Metabolomics of medicinal plants: the importance of multivariate analysis of analytical chemistry data
-
Okada T, Afendi FM, Altaf-Ul-Amin M, Takahashi H, Nakamura K, Kanaya S (2010) Metabolomics of medicinal plants: the importance of multivariate analysis of analytical chemistry data. Curr Comput Aided Drug Des 6: 179-196.
-
(2010)
Curr Comput Aided Drug Des
, vol.6
, pp. 179-196
-
-
Okada, T.1
Afendi, F.M.2
Altaf-Ul-Amin, M.3
Takahashi, H.4
Nakamura, K.5
Kanaya, S.6
-
114
-
-
66449114329
-
A chloroplastic UDP-glucose pyrophosphorylase from Arabidopsis is the committed enzyme for the first step of sulfolipid biosynthesis
-
doi:10.1105/tpc.108.063925
-
Okazaki Y, Shimojima M, Sawada Y, Toyooka K, Narisawa T, Mochida K, Tanaka H, Matsuda F, Hirai A, Hirai MY, Ohta H, Saito K (2009) A chloroplastic UDP-glucose pyrophosphorylase from Arabidopsis is the committed enzyme for the first step of sulfolipid biosynthesis. Plant Cell 21: 892-909. doi: 10. 1105/tpc. 108. 063925.
-
(2009)
Plant Cell
, vol.21
, pp. 892-909
-
-
Okazaki, Y.1
Shimojima, M.2
Sawada, Y.3
Toyooka, K.4
Narisawa, T.5
Mochida, K.6
Tanaka, H.7
Matsuda, F.8
Hirai, A.9
Hirai, M.Y.10
Ohta, H.11
Saito, K.12
-
115
-
-
84874354969
-
Plant lipidomics based on hydrophilic interaction chromatography coupled to ion trap time-of-flight mass spectrometry
-
(in press). doi: 10. 1007/s11306-011-0318-z
-
Okazaki Y, Kamide Y, Hirai MY, Saito K (2011) Plant lipidomics based on hydrophilic interaction chromatography coupled to ion trap time-of-flight mass spectrometry. Metabolomics (in press). doi: 10. 1007/s11306-011-0318-z.
-
(2011)
Metabolomics
-
-
Okazaki, Y.1
Kamide, Y.2
Hirai, M.Y.3
Saito, K.4
-
116
-
-
17044391118
-
Integrating genomics and metabolomics for engineering plant metabolic pathways
-
doi:10.1016/j.copbio.2005.02.007
-
Oksman-Caldentey KM, Saito K (2005) Integrating genomics and metabolomics for engineering plant metabolic pathways. Curr Opin Biotechnol 16: 174-179. doi: 10. 1016/j. copbio. 2005. 02. 007.
-
(2005)
Curr Opin Biotechnol
, vol.16
, pp. 174-179
-
-
Oksman-Caldentey, K.M.1
Saito, K.2
-
117
-
-
34249851432
-
Application of gas chromatography-mass spectrometry metabolite profiling techniques to the analysis of heathland plant diets of sheep
-
doi:10.1021/jf062995w
-
Parveen I, Moorby JM, Fraser MD, Allison GG, Kopka J (2007) Application of gas chromatography-mass spectrometry metabolite profiling techniques to the analysis of heathland plant diets of sheep. J Agric Food Chem 55: 1129-1138. doi: 10. 1021/jf062995w.
-
(2007)
J Agric Food Chem
, vol.55
, pp. 1129-1138
-
-
Parveen, I.1
Moorby, J.M.2
Fraser, M.D.3
Allison, G.G.4
Kopka, J.5
-
118
-
-
34249752597
-
Extracting biology from high-dimensional biological data
-
doi:10.1242/jeb.004432
-
Quackenbush J (2002) Extracting biology from high-dimensional biological data. J Exp Biol 48: 1507-1517. doi: 10. 1242/jeb. 004432.
-
(2002)
J Exp Biol
, vol.48
, pp. 1507-1517
-
-
Quackenbush, J.1
-
119
-
-
43049167370
-
Development of GC×GC/TOF-MS metabolomics for use in ecotoxicological studies with invertebrates
-
doi:10.1016/j.aquatox.2008.03.002
-
Ralston-Hooper K, Hopf A, Oh C, Zhang X, Adamec J, Sepulveda MS (2008) Development of GC×GC/TOF-MS metabolomics for use in ecotoxicological studies with invertebrates. Aquat Toxicol 88: 48-52. doi: 10. 1016/j. aquatox. 2008. 03. 002.
-
(2008)
Aquat Toxicol
, vol.88
, pp. 48-52
-
-
Ralston-Hooper, K.1
Hopf, A.2
Oh, C.3
Zhang, X.4
Adamec, J.5
Sepulveda, M.S.6
-
121
-
-
33644853940
-
Measuring multiple fluxes through plant metabolic networks
-
doi:10.1111/j.1365-313X.2005.02649.x
-
Ratcliffe RG, Shachar-Hill Y (2006) Measuring multiple fluxes through plant metabolic networks. Plant J 45: 490-511. doi: 10. 1111/j. 1365-313X. 2005. 02649. x.
-
(2006)
Plant J
, vol.45
, pp. 490-511
-
-
Ratcliffe, R.G.1
Shachar-Hill, Y.2
-
122
-
-
77951602363
-
Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis
-
doi:10.1186/1471-2105-11-214
-
Redestig H, Kusano M, Fukushima A, Matsuda F, Saito K, Arita M (2010) Consolidating metabolite identifiers to enable contextual and multi-platform metabolomics data analysis. BMC Bioinform 11: 214. doi: 10. 1186/1471-2105-11-214.
-
(2010)
BMC Bioinform
, vol.11
, pp. 214
-
-
Redestig, H.1
Kusano, M.2
Fukushima, A.3
Matsuda, F.4
Saito, K.5
Arita, M.6
-
123
-
-
79953720270
-
Evaluation of genetically engineered crops using transcriptomic, proteomic, and metabolomic profiling techniques
-
doi:10.1104/pp.111.173609
-
Ricroch AE, Berge JB, Kuntz M (2011) Evaluation of genetically engineered crops using transcriptomic, proteomic, and metabolomic profiling techniques. Plant Physiol 155: 1752-1761. doi: 10. 1104/pp. 111. 173609.
-
(2011)
Plant Physiol
, vol.155
, pp. 1752-1761
-
-
Ricroch, A.E.1
Berge, J.B.2
Kuntz, M.3
-
124
-
-
0035105106
-
Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems
-
doi:10.1105/tpc.13.1.11
-
Roessner U, Luedemann A, Brust D, Fiehn O, Linke T, Willmitzer L, Fernie A (2001) Metabolic profiling allows comprehensive phenotyping of genetically or environmentally modified plant systems. Plant Cell 13: 11-29. doi: 10. 1105/tpc. 13. 1. 11.
-
(2001)
Plant Cell
, vol.13
, pp. 11-29
-
-
Roessner, U.1
Luedemann, A.2
Brust, D.3
Fiehn, O.4
Linke, T.5
Willmitzer, L.6
Fernie, A.7
-
125
-
-
54149090305
-
Biochemical networks and epistasis shape the Arabidopsis thaliana metabolome
-
doi:10.1105/tpc.108.058131
-
Rowe HC, Hansen BG, Halkier BA, Kliebenstein DJ (2008) Biochemical networks and epistasis shape the Arabidopsis thaliana metabolome. Plant Cell 20: 1199-1216. doi: 10. 1105/tpc. 108. 058131.
-
(2008)
Plant Cell
, vol.20
, pp. 1199-1216
-
-
Rowe, H.C.1
Hansen, B.G.2
Halkier, B.A.3
Kliebenstein, D.J.4
-
126
-
-
77951880802
-
Metabolomics for functional genomics, systems biology, and biotechnology
-
doi:10.1146/annurev.arplant.043008.092035
-
Saito K, Matsuda F (2010) Metabolomics for functional genomics, systems biology, and biotechnology. Annu Rev Plant Biol 61: 463-489. doi: 10. 1146/annurev. arplant. 043008. 092035.
-
(2010)
Annu Rev Plant Biol
, vol.61
, pp. 463-489
-
-
Saito, K.1
Matsuda, F.2
-
127
-
-
37849020436
-
Decoding genes with coexpression networks and metabolomics-'majority report by precogs
-
doi:10.1016/j.tplants.2007.10.006
-
Saito K, Hirai MY, Yonekura-Sakakibara K (2008) Decoding genes with coexpression networks and metabolomics-'majority report by precogs'. Trends Plant Sci 13: 36-43. doi: 10. 1016/j. tplants. 2007. 10. 006.
-
(2008)
Trends Plant Sci
, vol.13
, pp. 36-43
-
-
Saito, K.1
Hirai, M.Y.2
Yonekura-Sakakibara, K.3
-
128
-
-
78651340558
-
KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data
-
doi:10.1093/nar/gkq989
-
Sakurai N, Ara T, Ogata Y, Sano R, Ohno T, Sugiyama K, Hiruta A, Yamazaki K, Yano K, Aoki K, Aharoni A, Hamada K, Yokoyama K, Kawamura S, Otsuka H, Tokimatsu T, Kanehisa M, Suzuki H, Saito K, Shibata D (2011) KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and metabolite co-accumulation and omics data. Nucleic Acids Res 39: D677-D684. doi: 10. 1093/nar/gkq989.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Sakurai, N.1
Ara, T.2
Ogata, Y.3
Sano, R.4
Ohno, T.5
Sugiyama, K.6
Hiruta, A.7
Yamazaki, K.8
Yano, K.9
Aoki, K.10
Aharoni, A.11
Hamada, K.12
Yokoyama, K.13
Kawamura, S.14
Otsuka, H.15
Tokimatsu, T.16
Kanehisa, M.17
Suzuki, H.18
Saito, K.19
Shibata, D.20
more..
-
129
-
-
0037153190
-
The genome sequence and structure of rice chromosome 1
-
doi:10.1038/nature01184
-
Sasaki T, Matsumoto T, Yamamoto K, Sakata K, Baba T, Katayose Y, Wu J, Niimura Y, Cheng Z, Nagamura Y, Antonio BA, Kanamori H, Hosokawa S, Masukawa M, Arikawa K, Chiden Y, Hayashi M, Okamoto M, Ando T, Aoki H, Arita K, Hamada M, Harada C, Hijishita S, Honda M, Ichikawa Y, Idonuma A, Iijima M, Ikeda M, Ikeno M, Ito S, Ito T, Ito Y, Iwabuchi A, Kamiya K, Karasawa W, Katagiri S, Kikuta A, Kobayashi N, Kono I, Machita K, Maehara T, Mizuno H, Mizubayashi T, Mukai Y, Nagasaki H, Nakashima M, Nakama Y, Nakamichi Y, Nakamura M, Namiki N, Negishi M, Ohta I, Ono N, Saji S, Sakai K, Shibata M, Shimokawa T, Shomura A, Song J, Takazaki Y, Terasawa K, Tsuji K, Waki K, Yamagata H, Yamane H, Yoshiki S, Yoshihara R, Yukawa K, Zhong H, Iwama H, Endo T, Ito H, Hahn JH, Kim HI, Eun MY, Yano M, Jiang J, Gojobori T (2002) The genome sequence and structure of rice chromosome 1. Nature 420: 312-316. doi: 10. 1038/nature01184.
-
(2002)
Nature
, vol.420
, pp. 312-316
-
-
Sasaki, T.1
Matsumoto, T.2
Yamamoto, K.3
Sakata, K.4
Baba, T.5
Katayose, Y.6
Wu, J.7
Niimura, Y.8
Cheng, Z.9
Nagamura, Y.10
Antonio, B.A.11
Kanamori, H.12
Hosokawa, S.13
Masukawa, M.14
Arikawa, K.15
Chiden, Y.16
Hayashi, M.17
Okamoto, M.18
Ando, T.19
Aoki, H.20
Arita, K.21
Hamada, M.22
Harada, C.23
Hijishita, S.24
Honda, M.25
Ichikawa, Y.26
Idonuma, A.27
Iijima, M.28
Ikeda, M.29
Ikeno, M.30
Ito, S.31
Ito, T.32
Ito, Y.33
Iwabuchi, A.34
Kamiya, K.35
Karasawa, W.36
Katagiri, S.37
Kikuta, A.38
Kobayashi, N.39
Kono, I.40
Machita, K.41
Maehara, T.42
Mizuno, H.43
Mizubayashi, T.44
Mukai, Y.45
Nagasaki, H.46
Nakashima, M.47
Nakama, Y.48
Nakamichi, Y.49
Nakamura, M.50
Namiki, N.51
Negishi, M.52
Ohta, I.53
Ono, N.54
Saji, S.55
Sakai, K.56
Shibata, M.57
Shimokawa, T.58
Shomura, A.59
Song, J.60
Takazaki, Y.61
Terasawa, K.62
Tsuji, K.63
Waki, K.64
Yamagata, H.65
Yamane, H.66
Yoshiki, S.67
Yoshihara, R.68
Yukawa, K.69
Zhong, H.70
Iwama, H.71
Endo, T.72
Ito, H.73
Hahn, J.H.74
Kim, H.I.75
Eun, M.Y.76
Yano, M.77
Jiang, J.78
Gojobori, T.79
more..
-
130
-
-
47349104720
-
Time-resolved metabolomics reveals metabolic modulation in rice foliage
-
doi:10.1186/1752-0509-2-51
-
Sato S, Arita M, Soga T, Nishioka T, Tomita M (2008) Time-resolved metabolomics reveals metabolic modulation in rice foliage. BMC Syst Biol 2: 51. doi: 10. 1186/1752-0509-2-51.
-
(2008)
BMC Syst Biol
, vol.2
, pp. 51
-
-
Sato, S.1
Arita, M.2
Soga, T.3
Nishioka, T.4
Tomita, M.5
-
131
-
-
58449134032
-
Widely targeted metabolomics based on large-scale MS/MS data for elucidating metabolite accumulation patterns in plants
-
doi:10.1093/pcp/pcn183
-
Sawada Y, Akiyama K, Sakata A, Kuwahara A, Otsuki H, Sakurai T, Saito K, Hirai MY (2009) Widely targeted metabolomics based on large-scale MS/MS data for elucidating metabolite accumulation patterns in plants. Plant Cell Physiol 50: 37-47. doi: 10. 1093/pcp/pcn183.
-
(2009)
Plant Cell Physiol
, vol.50
, pp. 37-47
-
-
Sawada, Y.1
Akiyama, K.2
Sakata, A.3
Kuwahara, A.4
Otsuki, H.5
Sakurai, T.6
Saito, K.7
Hirai, M.Y.8
-
132
-
-
33645746673
-
Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement
-
doi:10.1038/nbt1192
-
Schauer N, Semel Y, Roessner U, Gur A, Balbo I, Carrari F, Pleban T, Perez-Melis A, Bruedigam C, Kopka J, Willmitzer L, Zamir D, Fernie AR (2006) Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nat Biotechnol 24: 447-454. doi: 10. 1038/nbt1192.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 447-454
-
-
Schauer, N.1
Semel, Y.2
Roessner, U.3
Gur, A.4
Balbo, I.5
Carrari, F.6
Pleban, T.7
Perez-Melis, A.8
Bruedigam, C.9
Kopka, J.10
Willmitzer, L.11
Zamir, D.12
Fernie, A.R.13
-
133
-
-
48249152281
-
Mode of inheritance of primary metabolic traits in tomato
-
doi:10.1105/tpc.107.056523
-
Schauer N, Semel Y, Balbo I, Steinfath M, Repsilber D, Selbig J, Pleban T, Zamir D, Fernie AR (2008) Mode of inheritance of primary metabolic traits in tomato. Plant Cell 20: 509-523. doi: 10. 1105/tpc. 107. 056523.
-
(2008)
Plant Cell
, vol.20
, pp. 509-523
-
-
Schauer, N.1
Semel, Y.2
Balbo, I.3
Steinfath, M.4
Repsilber, D.5
Selbig, J.6
Pleban, T.7
Zamir, D.8
Fernie, A.R.9
-
134
-
-
77950928397
-
Mass spectrometry screening reveals widespread diversity in trichome specialized metabolites of tomato chromosomal substitution lines
-
doi:10.1111/j.1365-313X.2010.04154.x
-
Schilmiller A, Shi F, Kim J, Charbonneau AL, Holmes D, Daniel Jones A, Last RL (2010) Mass spectrometry screening reveals widespread diversity in trichome specialized metabolites of tomato chromosomal substitution lines. Plant J 62: 391-403. doi: 10. 1111/j. 1365-313X. 2010. 04154. x.
-
(2010)
Plant J
, vol.62
, pp. 391-403
-
-
Schilmiller, A.1
Shi, F.2
Kim, J.3
Charbonneau, A.L.4
Holmes, D.5
Daniel Jones, A.6
Last, R.L.7
-
135
-
-
34547660375
-
Towards dynamic metabolic network measurements by multi-dimensional NMR-based fluxomics
-
doi:10.1016/j.phytochem.2007.04.011
-
Sekiyama Y, Kikuchi J (2007) Towards dynamic metabolic network measurements by multi-dimensional NMR-based fluxomics. Phytochemistry 68: 2320-2329. doi: 10. 1016/j. phytochem. 2007. 04. 011.
-
(2007)
Phytochemistry
, vol.68
, pp. 2320-2329
-
-
Sekiyama, Y.1
Kikuchi, J.2
-
136
-
-
77749302377
-
Profiling polar and semipolar plant metabolites throughout extraction processes using a combined solution-state and high-resolution magic angle spinning NMR approach
-
doi:10.1021/ac9019076
-
Sekiyama Y, Chikayama E, Kikuchi J (2010) Profiling polar and semipolar plant metabolites throughout extraction processes using a combined solution-state and high-resolution magic angle spinning NMR approach. Anal Chem 82: 1643-1652. doi: 10. 1021/ac9019076.
-
(2010)
Anal Chem
, vol.82
, pp. 1643-1652
-
-
Sekiyama, Y.1
Chikayama, E.2
Kikuchi, J.3
-
137
-
-
22744452937
-
Statistical methods for comparing comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry results: metabolomic analysis of mouse tissue extracts
-
doi:10.1016/j.chroma.2005.05.088
-
Shellie RA, Welthagen W, Zrostlikova J, Spranger J, Ristow M, Fiehn O, Zimmermann R (2005) Statistical methods for comparing comprehensive two-dimensional gas chromatography-time-of-flight mass spectrometry results: metabolomic analysis of mouse tissue extracts. J Chromatogr A 1086: 83-90. doi: 10. 1016/j. chroma. 2005. 05. 088.
-
(2005)
J Chromatogr A
, vol.1086
, pp. 83-90
-
-
Shellie, R.A.1
Welthagen, W.2
Zrostlikova, J.3
Spranger, J.4
Ristow, M.5
Fiehn, O.6
Zimmermann, R.7
-
138
-
-
84983633298
-
KNApSAcK: a comprehensive species-metabolite relationship database
-
In: Saito K, Dixon R, Willmitzer L (eds), Springer, Heidelberg
-
Shinbo Y, Nakamura Y, Altaf-Ul-Amin M, Asahi H, Kurokawa K, Arita M, Saito K, Ohta D, Shibata D, Kanaya S (2006) KNApSAcK: a comprehensive species-metabolite relationship database. In: Saito K, Dixon R, Willmitzer L (eds) Biotechnology in agriculture and forestry. Springer, Heidelberg, pp 165-184.
-
(2006)
Biotechnology in agriculture and forestry
, pp. 165-184
-
-
Shinbo, Y.1
Nakamura, Y.2
Altaf-Ul-Amin, M.3
Asahi, H.4
Kurokawa, K.5
Arita, M.6
Saito, K.7
Ohta, D.8
Shibata, D.9
Kanaya, S.10
-
139
-
-
77954768809
-
The differential spatial distribution of secondary metabolites in Arabidopsis leaves reacting hypersensitively to Pseudomonas syringae pv tomato is dependent on the oxidative burst
-
doi:10.1093/jxb/erq157
-
Simon C, Langlois-Meurinne M, Bellvert F, Garmier M, Didierlaurent L, Massoud K, Chaouch S, Marie A, Bodo B, Kauffmann S, Noctor G, Saindrenan P (2010) The differential spatial distribution of secondary metabolites in Arabidopsis leaves reacting hypersensitively to Pseudomonas syringae pv tomato is dependent on the oxidative burst. J Exp Bot 61: 3355-3370. doi: 10. 1093/jxb/erq157.
-
(2010)
J Exp Bot
, vol.61
, pp. 3355-3370
-
-
Simon, C.1
Langlois-Meurinne, M.2
Bellvert, F.3
Garmier, M.4
Didierlaurent, L.5
Massoud, K.6
Chaouch, S.7
Marie, A.8
Bodo, B.9
Kauffmann, S.10
Noctor, G.11
Saindrenan, P.12
-
140
-
-
32444432587
-
METLIN: a metabolite mass spectral database
-
Smith CA, O'Maille G, Want EJ, Qin C, Trauger SA, Brandon TR, Custodio DE, Abagyan R, Siuzdak G (2005) METLIN: a metabolite mass spectral database. Ther Drug Monit 27: 747-751.
-
(2005)
Ther Drug Monit
, vol.27
, pp. 747-751
-
-
Smith, C.A.1
O'Maille, G.2
Want, E.J.3
Qin, C.4
Trauger, S.A.5
Brandon, T.R.6
Custodio, D.E.7
Abagyan, R.8
Siuzdak, G.9
-
141
-
-
32444446805
-
XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification
-
doi:10.1021/ac051437y
-
Smith CA, Want EJ, O'Maille G, Abagyan R, Siuzdak G (2006) XCMS: processing mass spectrometry data for metabolite profiling using nonlinear peak alignment, matching, and identification. Anal Chem 78: 779-787. doi: 10. 1021/ac051437y.
-
(2006)
Anal Chem
, vol.78
, pp. 779-787
-
-
Smith, C.A.1
Want, E.J.2
O'Maille, G.3
Abagyan, R.4
Siuzdak, G.5
-
142
-
-
0037115531
-
Pressure-assisted capillary electrophoresis electrospray ionization mass spectrometry for analysis of multivalent anions
-
doi:10.1021/ac0202684
-
Soga T, Ueno Y, Naraoka H, Matsuda K, Tomita M, Nishioka T (2002) Pressure-assisted capillary electrophoresis electrospray ionization mass spectrometry for analysis of multivalent anions. Anal Chem 74: 6224-6229. doi: 10. 1021/ac0202684.
-
(2002)
Anal Chem
, vol.74
, pp. 6224-6229
-
-
Soga, T.1
Ueno, Y.2
Naraoka, H.3
Matsuda, K.4
Tomita, M.5
Nishioka, T.6
-
143
-
-
33745209659
-
Differential metabolomics reveals ophthalmic acid as an oxidative stress biomarker indicating hepatic glutathione consumption
-
doi:10.1074/jbc.M601876200
-
Soga T, Baran R, Suematsu M, Ueno Y, Ikeda S, Sakurakawa T, Kakazu Y, Ishikawa T, Robert M, Nishioka T, Tomita M (2006) Differential metabolomics reveals ophthalmic acid as an oxidative stress biomarker indicating hepatic glutathione consumption. J Biol Chem 281: 16768-16776. doi: 10. 1074/jbc. M601876200.
-
(2006)
J Biol Chem
, vol.281
, pp. 16768-16776
-
-
Soga, T.1
Baran, R.2
Suematsu, M.3
Ueno, Y.4
Ikeda, S.5
Sakurakawa, T.6
Kakazu, Y.7
Ishikawa, T.8
Robert, M.9
Nishioka, T.10
Tomita, M.11
-
144
-
-
68049109441
-
Metabolomic profiling of anionic metabolites by capillary electrophoresis mass spectrometry
-
doi:10.1021/ac900675k
-
Soga T, Igarashi K, Ito C, Mizobuchi K, Zimmermann HP, Tomita M (2009) Metabolomic profiling of anionic metabolites by capillary electrophoresis mass spectrometry. Anal Chem 81: 6165-6174. doi: 10. 1021/ac900675k.
-
(2009)
Anal Chem
, vol.81
, pp. 6165-6174
-
-
Soga, T.1
Igarashi, K.2
Ito, C.3
Mizobuchi, K.4
Zimmermann, H.P.5
Tomita, M.6
-
145
-
-
60149091657
-
Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression
-
doi:10.1038/nature07762
-
Sreekumar A, Poisson LM, Rajendiran TM, Khan AP, Cao Q, Yu J, Laxman B, Mehra R, Lonigro RJ, Li Y, Nyati MK, Ahsan A, Kalyana-Sundaram S, Han B, Cao X, Byun J, Omenn GS, Ghosh D, Pennathur S, Alexander DC, Berger A, Shuster JR, Wei JT, Varambally S, Beecher C, Chinnaiyan AM (2009) Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression. Nature 457: 910-914. doi: 10. 1038/nature07762.
-
(2009)
Nature
, vol.457
, pp. 910-914
-
-
Sreekumar, A.1
Poisson, L.M.2
Rajendiran, T.M.3
Khan, A.P.4
Cao, Q.5
Yu, J.6
Laxman, B.7
Mehra, R.8
Lonigro, R.J.9
Li, Y.10
Nyati, M.K.11
Ahsan, A.12
Kalyana-Sundaram, S.13
Han, B.14
Cao, X.15
Byun, J.16
Omenn, G.S.17
Ghosh, D.18
Pennathur, S.19
Alexander, D.C.20
Berger, A.21
Shuster, J.R.22
Wei, J.T.23
Varambally, S.24
Beecher, C.25
Chinnaiyan, A.M.26
more..
-
146
-
-
37249035287
-
Metabolic profiling of flavonoids in Lotus japonicus using liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry
-
doi:10.1016/j.phytochem.2007.06.017
-
Suzuki H, Sasaki R, Ogata Y, Nakamura Y, Sakurai N, Kitajima M, Takayama H, Kanaya S, Aoki K, Shibata D, Saito K (2008) Metabolic profiling of flavonoids in Lotus japonicus using liquid chromatography Fourier transform ion cyclotron resonance mass spectrometry. Phytochemistry 69: 99-111. doi: 10. 1016/j. phytochem. 2007. 06. 017.
-
(2008)
Phytochemistry
, vol.69
, pp. 99-111
-
-
Suzuki, H.1
Sasaki, R.2
Ogata, Y.3
Nakamura, Y.4
Sakurai, N.5
Kitajima, M.6
Takayama, H.7
Kanaya, S.8
Aoki, K.9
Shibata, D.10
Saito, K.11
-
147
-
-
41249093623
-
Basic analytical systems for lipidomics by mass spectrometry in Japan
-
doi:10.1016/S0076-6879(07)32008-9
-
Taguchi R, Nishijima M, Shimizu T (2007) Basic analytical systems for lipidomics by mass spectrometry in Japan. Methods Enzymol 432: 185-211. doi: 10. 1016/S0076-6879(07)32008-9.
-
(2007)
Methods Enzymol
, vol.432
, pp. 185-211
-
-
Taguchi, R.1
Nishijima, M.2
Shimizu, T.3
-
148
-
-
18744410743
-
High throughput metabolome and proteome analysis of transgenic rice plants (Oryza sativa L.)
-
doi: 10. 5511/plantbiotechnology. 22. 47
-
Takahashi H, Hotta Y, Hayashi M, Kawai-Yamada M, Komatsu S, Uchiyama H (2005) High throughput metabolome and proteome analysis of transgenic rice plants (Oryza sativa L.). Plant Biotechnol 22: 47-50. doi: 10. 5511/plantbiotechnology. 22. 47.
-
(2005)
Plant Biotechnol
, vol.22
, pp. 47-50
-
-
Takahashi, H.1
Hotta, Y.2
Hayashi, M.3
Kawai-Yamada, M.4
Komatsu, S.5
Uchiyama, H.6
-
149
-
-
23044510825
-
Biomarker metabolites capturing the metabolite variance present in a rice plant developmental period
-
doi:10.1186/1471-2229-5-8
-
Tarpley L, Duran AL, Kebrom TH, Sumner LW (2005) Biomarker metabolites capturing the metabolite variance present in a rice plant developmental period. BMC Plant Biol 5: 8. doi: 10. 1186/1471-2229-5-8.
-
(2005)
BMC Plant Biol
, vol.5
, pp. 8
-
-
Tarpley, L.1
Duran, A.L.2
Kebrom, T.H.3
Sumner, L.W.4
-
150
-
-
12144291195
-
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes
-
doi:10.1111/j.1365-313X.2004.02016.x
-
Thimm O, Blasing O, Gibon Y, Nagel A, Meyer S, Kruger P, Selbig J, Muller LA, Rhee SY, Stitt M (2004) MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes. Plant J 37: 914-939. doi: 10. 1111/j. 1365-313X. 2004. 02016. x.
-
(2004)
Plant J
, vol.37
, pp. 914-939
-
-
Thimm, O.1
Blasing, O.2
Gibon, Y.3
Nagel, A.4
Meyer, S.5
Kruger, P.6
Selbig, J.7
Muller, L.A.8
Rhee, S.Y.9
Stitt, M.10
-
151
-
-
34547123115
-
Top-down phenomics of Arabidopsis thaliana: metabolic profiling by one- and two-dimensional nuclear magnetic resonance spectroscopy and transcriptome analysis of albino mutants
-
doi:10.1074/jbc.M700549200
-
Tian C, Chikayama E, Tsuboi Y, Kuromori T, Shinozaki K, Kikuchi J, Hirayama T (2007) Top-down phenomics of Arabidopsis thaliana: metabolic profiling by one- and two-dimensional nuclear magnetic resonance spectroscopy and transcriptome analysis of albino mutants. J Biol Chem 282: 18532-18541. doi: 10. 1074/jbc. M700549200.
-
(2007)
J Biol Chem
, vol.282
, pp. 18532-18541
-
-
Tian, C.1
Chikayama, E.2
Tsuboi, Y.3
Kuromori, T.4
Shinozaki, K.5
Kikuchi, J.6
Hirayama, T.7
-
152
-
-
62549159971
-
Web-based resources for mass-spectrometry-based metabolomics: a user's guide
-
doi:10.1016/j.phytochem.2009.02.004
-
Tohge T, Fernie AR (2009) Web-based resources for mass-spectrometry-based metabolomics: a user's guide. Phytochemistry 70: 450-456. doi: 10. 1016/j. phytochem. 2009. 02. 004.
-
(2009)
Phytochemistry
, vol.70
, pp. 450-456
-
-
Tohge, T.1
Fernie, A.R.2
-
153
-
-
77954396635
-
Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function
-
doi:10.1038/nprot.2010.82
-
Tohge T, Fernie AR (2010) Combining genetic diversity, informatics and metabolomics to facilitate annotation of plant gene function. Nat Protoc 5: 1210-1227. doi: 10. 1038/nprot. 2010. 82.
-
(2010)
Nat Protoc
, vol.5
, pp. 1210-1227
-
-
Tohge, T.1
Fernie, A.R.2
-
154
-
-
17044369876
-
Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor
-
doi:10.1111/j.1365-313X.2005.02371.x
-
Tohge T, Nishiyama Y, Hirai MY, Yano M, Nakajima J, Awazuhara M, Inoue E, Takahashi H, Goodenowe DB, Kitayama M, Noji M, Yamazaki M, Saito K (2005) Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor. Plant J 42: 218-235. doi: 10. 1111/j. 1365-313X. 2005. 02371. x.
-
(2005)
Plant J
, vol.42
, pp. 218-235
-
-
Tohge, T.1
Nishiyama, Y.2
Hirai, M.Y.3
Yano, M.4
Nakajima, J.5
Awazuhara, M.6
Inoue, E.7
Takahashi, H.8
Goodenowe, D.B.9
Kitayama, M.10
Noji, M.11
Yamazaki, M.12
Saito, K.13
-
155
-
-
27244440204
-
KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps
-
doi:10.1104/pp.105.060525
-
Tokimatsu T, Sakurai N, Suzuki H, Ohta H, Nishitani K, Koyama T, Umezawa T, Misawa N, Saito K, Shibata D (2005) KaPPA-view: a web-based analysis tool for integration of transcript and metabolite data on plant metabolic pathway maps. Plant Physiol 138: 1289-1300. doi: 10. 1104/pp. 105. 060525.
-
(2005)
Plant Physiol
, vol.138
, pp. 1289-1300
-
-
Tokimatsu, T.1
Sakurai, N.2
Suzuki, H.3
Ohta, H.4
Nishitani, K.5
Koyama, T.6
Umezawa, T.7
Misawa, N.8
Saito, K.9
Shibata, D.10
-
156
-
-
62149132565
-
Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics
-
doi:10.1111/j.1365-313X.2008.03748.x
-
Urano K, Maruyama K, Ogata Y, Morishita Y, Takeda M, Sakurai N, Suzuki H, Saito K, Shibata D, Kobayashi M, Yamaguchi-Shinozaki K, Shinozaki K (2009) Characterization of the ABA-regulated global responses to dehydration in Arabidopsis by metabolomics. Plant J 57: 1065-1078. doi: 10. 1111/j. 1365-313X. 2008. 03748. x.
-
(2009)
Plant J
, vol.57
, pp. 1065-1078
-
-
Urano, K.1
Maruyama, K.2
Ogata, Y.3
Morishita, Y.4
Takeda, M.5
Sakurai, N.6
Suzuki, H.7
Saito, K.8
Shibata, D.9
Kobayashi, M.10
Yamaguchi-Shinozaki, K.11
Shinozaki, K.12
-
157
-
-
77953388453
-
How close is the bench to the bedside? Metabolic profiling in cancer research
-
doi:10.1186/gm5
-
Van QN, Veenstra TD (2009) How close is the bench to the bedside? Metabolic profiling in cancer research. Genome Med 1: 5. doi: 10. 1186/gm5.
-
(2009)
Genome Med
, vol.1
, pp. 5
-
-
Van, Q.N.1
Veenstra, T.D.2
-
158
-
-
20344375968
-
A non-directed approach to the differential analysis of multiple LC-MS-derived metabolic profiles
-
doi:10.1007/s11306-005-4432-7
-
Vorst O, de Vos CH, Lommen A, Staps RV, Visser RG, Bino RJ, Hall RD (2005) A non-directed approach to the differential analysis of multiple LC-MS-derived metabolic profiles. Metabolomics 1: 169-180. doi: 10. 1007/s11306-005-4432-7.
-
(2005)
Metabolomics
, vol.1
, pp. 169-180
-
-
Vorst, O.1
de Vos, C.H.2
Lommen, A.3
Staps, R.V.4
Visser, R.G.5
Bino, R.J.6
Hall, R.D.7
-
159
-
-
4344670208
-
Metabonomic investigations in mice infected with Schistosoma mansoni: an approach for biomarker identification
-
doi:10.1073/pnas.0404878101
-
Wang Y, Holmes E, Nicholson JK, Cloarec O, Chollet J, Tanner M, Singer BH, Utzinger J (2004) Metabonomic investigations in mice infected with Schistosoma mansoni: an approach for biomarker identification. Proc Natl Acad Sci USA 101: 12676-12681. doi: 10. 1073/pnas. 0404878101.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 12676-12681
-
-
Wang, Y.1
Holmes, E.2
Nicholson, J.K.3
Cloarec, O.4
Chollet, J.5
Tanner, M.6
Singer, B.H.7
Utzinger, J.8
-
160
-
-
33847006590
-
Recent applications of NMR spectroscopy in plant metabolomics
-
doi:10.1111/j.1742-4658.2007.05675.x
-
Ward JL, Baker JM, Beale MH (2007) Recent applications of NMR spectroscopy in plant metabolomics. FEBS J 274: 1126-1131. doi: 10. 1111/j. 1742-4658. 2007. 05675. x.
-
(2007)
FEBS J
, vol.274
, pp. 1126-1131
-
-
Ward, J.L.1
Baker, J.M.2
Beale, M.H.3
-
161
-
-
80054885906
-
1H]-NMR metabolite fingerprinting is a robust technique for collaborative plant metabolomic data collection
-
doi:10.1007/s11306-010-0200-4
-
1H]-NMR metabolite fingerprinting is a robust technique for collaborative plant metabolomic data collection. Metabolomics 6: 263-273. doi: 10. 1007/s11306-010-0200-4.
-
(2010)
Metabolomics
, vol.6
, pp. 263-273
-
-
Ward, J.L.1
Baker, J.M.2
Miller, S.J.3
Deborde, C.4
Maucourt, M.5
Biais, B.6
Rolin, D.7
Moing, A.8
Moco, S.9
Vervoort, J.10
Lommen, A.11
Schafer, H.12
Humpfer, E.13
Beale, M.H.14
-
162
-
-
77954898293
-
The metabolic transition during disease following infection of Arabidopsis thaliana by Pseudomonas syringae pv. tomato
-
doi: 10. 1111/j. 1365-313X. 2010. 04254. x
-
Ward JL, Forcat S, Beckmann M, Bennett M, Miller SJ, Baker JM, Hawkins ND, Vermeer CP, Lu C, Lin W, Truman WM, Beale MH, Draper J, Mansfield JW, Grant M (2010b) The metabolic transition during disease following infection of Arabidopsis thaliana by Pseudomonas syringae pv. tomato. Plant J. doi: 10. 1111/j. 1365-313X. 2010. 04254. x.
-
(2010)
Plant J
-
-
Ward, J.L.1
Forcat, S.2
Beckmann, M.3
Bennett, M.4
Miller, S.J.5
Baker, J.M.6
Hawkins, N.D.7
Vermeer, C.P.8
Lu, C.9
Lin, W.10
Truman, W.M.11
Beale, M.H.12
Draper, J.13
Mansfield, J.W.14
Grant, M.15
-
163
-
-
79960574427
-
Metabolomic analysis of Arabidopsis reveals hemiterpenoid glycosides as products of a nitrate ion-regulated, carbon flux overflow
-
doi: 10. 1073/pnas. 1018875108
-
Ward JL, Baker JM, Llewellyn AM, Hawkins ND, Beale MH (2011) Metabolomic analysis of Arabidopsis reveals hemiterpenoid glycosides as products of a nitrate ion-regulated, carbon flux overflow. Proc Natl Acad Sci USA. doi: 10. 1073/pnas. 1018875108.
-
(2011)
Proc Natl Acad Sci USA
-
-
Ward, J.L.1
Baker, J.M.2
Llewellyn, A.M.3
Hawkins, N.D.4
Beale, M.H.5
-
164
-
-
40749148526
-
Physiological roles of the beta-substituted alanine synthase gene family in Arabidopsis
-
doi:10.1104/pp.107.106831
-
Watanabe M, Kusano M, Oikawa A, Fukushima A, Noji M, Saito K (2008) Physiological roles of the beta-substituted alanine synthase gene family in Arabidopsis. Plant Physiol 146: 310-320. doi: 10. 1104/pp. 107. 106831.
-
(2008)
Plant Physiol
, vol.146
, pp. 310-320
-
-
Watanabe, M.1
Kusano, M.2
Oikawa, A.3
Fukushima, A.4
Noji, M.5
Saito, K.6
-
165
-
-
34848837299
-
Linking metabolic QTLs with network and cis-eQTLs controlling biosynthetic pathways
-
doi:10.1371/journal.pgen.0030162
-
Wentzell AM, Rowe HC, Hansen BG, Ticconi C, Halkier BA, Kliebenstein DJ (2007) Linking metabolic QTLs with network and cis-eQTLs controlling biosynthetic pathways. PLoS Genet 3: 1687-1701. doi: 10. 1371/journal. pgen. 0030162.
-
(2007)
PLoS Genet
, vol.3
, pp. 1687-1701
-
-
Wentzell, A.M.1
Rowe, H.C.2
Hansen, B.G.3
Ticconi, C.4
Halkier, B.A.5
Kliebenstein, D.J.6
-
166
-
-
38549092091
-
Database resources of the National Center for Biotechnology Information
-
doi:10.1093/nar/gkm1000
-
Wheeler DL, Barrett T, Benson DA, Bryant SH, Canese K, Chetvernin V, Church DM, Dicuccio M, Edgar R, Federhen S, Feolo M, Geer LY, Helmberg W, Kapustin Y, Khovayko O, Landsman D, Lipman DJ, Madden TL, Maglott DR, Miller V, Ostell J, Pruitt KD, Schuler GD, Shumway M, Sequeira E, Sherry ST, Sirotkin K, Souvorov A, Starchenko G, Tatusov RL, Tatusova TA, Wagner L, Yaschenko E (2008) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 36: D13-D21. doi: 10. 1093/nar/gkm1000.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Wheeler, D.L.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
Chetvernin, V.6
Church, D.M.7
Dicuccio, M.8
Edgar, R.9
Federhen, S.10
Feolo, M.11
Geer, L.Y.12
Helmberg, W.13
Kapustin, Y.14
Khovayko, O.15
Landsman, D.16
Lipman, D.J.17
Madden, T.L.18
Maglott, D.R.19
Miller, V.20
Ostell, J.21
Pruitt, K.D.22
Schuler, G.D.23
Shumway, M.24
Sequeira, E.25
Sherry, S.T.26
Sirotkin, K.27
Souvorov, A.28
Starchenko, G.29
Tatusov, R.L.30
Tatusova, T.A.31
Wagner, L.32
Yaschenko, E.33
more..
-
167
-
-
70349662165
-
Metabolic responses to salt stress of barley (Hordeum vulgare L.) cultivars, Sahara and Clipper, which differ in salinity tolerance
-
doi: 10. 1093/jxb/erp243
-
Widodo, Patterson JH, Newbigin E, Tester M, Bacic A, Roessner U (2009) Metabolic responses to salt stress of barley (Hordeum vulgare L.) cultivars, Sahara and Clipper, which differ in salinity tolerance. J Exp Bot 60: 4089-4103. doi: 10. 1093/jxb/erp243.
-
(2009)
J Exp Bot
, vol.60
, pp. 4089-4103
-
-
Widodo1
Patterson, J.H.2
Newbigin, E.3
Tester, M.4
Bacic, A.5
Roessner, U.6
-
168
-
-
58149202163
-
HMDB: a knowledgebase for the human metabolome
-
doi:10.1093/nar/gkn810
-
Wishart DS, Knox C, Guo AC, Eisner R, Young N, Gautam B, Hau DD, Psychogios N, Dong E, Bouatra S, Mandal R, Sinelnikov I, Xia J, Jia L, Cruz JA, Lim E, Sobsey CA, Shrivastava S, Huang P, Liu P, Fang L, Peng J, Fradette R, Cheng D, Tzur D, Clements M, Lewis A, De Souza A, Zuniga A, Dawe M, Xiong Y, Clive D, Greiner R, Nazyrova A, Shaykhutdinov R, Li L, Vogel HJ, Forsythe I (2009) HMDB: a knowledgebase for the human metabolome. Nucleic Acids Res 37: D603-D610. doi: 10. 1093/nar/gkn810.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Wishart, D.S.1
Knox, C.2
Guo, A.C.3
Eisner, R.4
Young, N.5
Gautam, B.6
Hau, D.D.7
Psychogios, N.8
Dong, E.9
Bouatra, S.10
Mandal, R.11
Sinelnikov, I.12
Xia, J.13
Jia, L.14
Cruz, J.A.15
Lim, E.16
Sobsey, C.A.17
Shrivastava, S.18
Huang, P.19
Liu, P.20
Fang, L.21
Peng, J.22
Fradette, R.23
Cheng, D.24
Tzur, D.25
Clements, M.26
Lewis, A.27
de Souza, A.28
Zuniga, A.29
Dawe, M.30
Xiong, Y.31
Clive, D.32
Greiner, R.33
Nazyrova, A.34
Shaykhutdinov, R.35
Li, L.36
Vogel, H.J.37
Forsythe, I.38
more..
-
169
-
-
0036618125
-
LIPIDBANK for Web, the newly developed lipid database
-
Yasugi E, Watanabe K (2002) LIPIDBANK for Web, the newly developed lipid database. Tanpakushitsu Kakusan Koso 47: 837-841.
-
(2002)
Tanpakushitsu Kakusan Koso
, vol.47
, pp. 837-841
-
-
Yasugi, E.1
Watanabe, K.2
-
170
-
-
0033983338
-
Engineering the provitamin A (β-carotene) biosynthetic pathway into (carotenoid-free) rice endosperm
-
doi:10.1126/science.287.5451.303
-
Ye X, Al-Babili S, Kloti A, Zhang J, Lucca P, Beyer P, Potrykus I (2000) Engineering the provitamin A (β-carotene) biosynthetic pathway into (carotenoid-free) rice endosperm. Science 287: 303-305. doi: 10. 1126/science. 287. 5451. 303.
-
(2000)
Science
, vol.287
, pp. 303-305
-
-
Ye, X.1
Al-Babili, S.2
Kloti, A.3
Zhang, J.4
Lucca, P.5
Beyer, P.6
Potrykus, I.7
-
171
-
-
70350214653
-
Functional genomics for plant natural product biosynthesis
-
doi:10.1039/B817077K
-
Yonekura-Sakakibara K, Saito K (2009) Functional genomics for plant natural product biosynthesis. Nat Prod Rep 26: 1466-1487. doi: 10. 1039/B817077K.
-
(2009)
Nat Prod Rep
, vol.26
, pp. 1466-1487
-
-
Yonekura-Sakakibara, K.1
Saito, K.2
-
172
-
-
34447502537
-
Identification of a flavonol 7-O-rhamnosyltransferase gene determining flavonoid pattern in Arabidopsis by transcriptome coexpression analysis and reverse genetics
-
doi:10.1074/jbc.M611498200
-
Yonekura-Sakakibara K, Tohge T, Niida R, Saito K (2007) Identification of a flavonol 7-O-rhamnosyltransferase gene determining flavonoid pattern in Arabidopsis by transcriptome coexpression analysis and reverse genetics. J Biol Chem 282: 14932-14941. doi: 10. 1074/jbc. M611498200.
-
(2007)
J Biol Chem
, vol.282
, pp. 14932-14941
-
-
Yonekura-Sakakibara, K.1
Tohge, T.2
Niida, R.3
Saito, K.4
-
173
-
-
57749089675
-
Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis
-
doi:10.1105/tpc.108.058040
-
Yonekura-Sakakibara K, Tohge T, Matsuda F, Nakabayashi R, Takayama H, Niida R, Watanabe-Takahashi A, Inoue E, Saito K (2008) Comprehensive flavonol profiling and transcriptome coexpression analysis leading to decoding gene-metabolite correlations in Arabidopsis. Plant Cell 20: 2160-2176. doi: 10. 1105/tpc. 108. 058040.
-
(2008)
Plant Cell
, vol.20
, pp. 2160-2176
-
-
Yonekura-Sakakibara, K.1
Tohge, T.2
Matsuda, F.3
Nakabayashi, R.4
Takayama, H.5
Niida, R.6
Watanabe-Takahashi, A.7
Inoue, E.8
Saito, K.9
-
174
-
-
0037023384
-
A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
-
doi:10.1126/science.1068037
-
Yu J, Hu S, Wang J, Wong GK, Li S, Liu B, Deng Y, Dai L, Zhou Y, Zhang X, Cao M, Liu J, Sun J, Tang J, Chen Y, Huang X, Lin W, Ye C, Tong W, Cong L, Geng J, Han Y, Li L, Li W, Hu G, Li J, Liu Z, Qi Q, Li T, Wang X, Lu H, Wu T, Zhu M, Ni P, Han H, Dong W, Ren X, Feng X, Cui P, Li X, Wang H, Xu X, Zhai W, Xu Z, Zhang J, He S, Xu J, Zhang K, Zheng X, Dong J, Zeng W, Tao L, Ye J, Tan J, Chen X, He J, Liu D, Tian W, Tian C, Xia H, Bao Q, Li G, Gao H, Cao T, Zhao W, Li P, Chen W, Zhang Y, Hu J, Liu S, Yang J, Zhang G, Xiong Y, Li Z, Mao L, Zhou C, Zhu Z, Chen R, Hao B, Zheng W, Chen S, Guo W, Tao M, Zhu L, Yuan L, Yang H (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296: 79-92. doi: 10. 1126/science. 1068037.
-
(2002)
Science
, vol.296
, pp. 79-92
-
-
Yu, J.1
Hu, S.2
Wang, J.3
Wong, G.K.4
Li, S.5
Liu, B.6
Deng, Y.7
Dai, L.8
Zhou, Y.9
Zhang, X.10
Cao, M.11
Liu, J.12
Sun, J.13
Tang, J.14
Chen, Y.15
Huang, X.16
Lin, W.17
Ye, C.18
Tong, W.19
Cong, L.20
Geng, J.21
Han, Y.22
Li, L.23
Li, W.24
Hu, G.25
Li, J.26
Liu, Z.27
Qi, Q.28
Li, T.29
Wang, X.30
Lu, H.31
Wu, T.32
Zhu, M.33
Ni, P.34
Han, H.35
Dong, W.36
Ren, X.37
Feng, X.38
Cui, P.39
Li, X.40
Wang, H.41
Xu, X.42
Zhai, W.43
Xu, Z.44
Zhang, J.45
He, S.46
Xu, J.47
Zhang, K.48
Zheng, X.49
Dong, J.50
Zeng, W.51
Tao, L.52
Ye, J.53
Tan, J.54
Chen, X.55
He, J.56
Liu, D.57
Tian, W.58
Tian, C.59
Xia, H.60
Bao, Q.61
Li, G.62
Gao, H.63
Cao, T.64
Zhao, W.65
Li, P.66
Chen, W.67
Zhang, Y.68
Hu, J.69
Liu, S.70
Yang, J.71
Zhang, G.72
Xiong, Y.73
Li, Z.74
Mao, L.75
Zhou, C.76
Zhu, Z.77
Chen, R.78
Hao, B.79
Zheng, W.80
Chen, S.81
Guo, W.82
Tao, M.83
Zhu, L.84
Yuan, L.85
Yang, H.86
more..
|