메뉴 건너뛰기




Volumn 23, Issue 2, 2013, Pages 191-196

Identical cells with different 3D genomes; cause and consequences?

Author keywords

[No Author keywords available]

Indexed keywords

CELL NUCLEUS; CELL POPULATION; CELL TYPE; ENHANCER REGION; GENE EXPRESSION REGULATION; GENE INTERACTION; GENE STRUCTURE; GENOME; HUMAN; INTERPHASE; MAMMAL; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; REVIEW;

EID: 84877795624     PISSN: 0959437X     EISSN: 18790380     Source Type: Journal    
DOI: 10.1016/j.gde.2012.12.010     Document Type: Review
Times cited : (40)

References (58)
  • 3
    • 80455143728 scopus 로고    scopus 로고
    • The complex transcription regulatory landscape of our genome: control in three dimensions
    • Splinter E., de Laat W. The complex transcription regulatory landscape of our genome: control in three dimensions. EMBO J 2011, 30:4345-4355.
    • (2011) EMBO J , vol.30 , pp. 4345-4355
    • Splinter, E.1    de Laat, W.2
  • 4
    • 84862755561 scopus 로고    scopus 로고
    • Landscapes and archipelagos: spatial organization of gene regulation in vertebrates
    • Montavon T., Duboule D. Landscapes and archipelagos: spatial organization of gene regulation in vertebrates. Trends Cell Biol 2012, 22:347-354.
    • (2012) Trends Cell Biol , vol.22 , pp. 347-354
    • Montavon, T.1    Duboule, D.2
  • 5
    • 79953176250 scopus 로고    scopus 로고
    • Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor
    • Ruf S., Symmons O., Uslu V.V., Dolle D., Hot C., Ettwiller L., Spitz F. Large-scale analysis of the regulatory architecture of the mouse genome with a transposon-associated sensor. Nat Genet 2011, 43:379-386.
    • (2011) Nat Genet , vol.43 , pp. 379-386
    • Ruf, S.1    Symmons, O.2    Uslu, V.V.3    Dolle, D.4    Hot, C.5    Ettwiller, L.6    Spitz, F.7
  • 6
    • 84865800494 scopus 로고    scopus 로고
    • The long-range interaction landscape of gene promoters
    • Sanyal A., Lajoie B.R., Jain G., Dekker J. The long-range interaction landscape of gene promoters. Nature 2012, 489:109-113.
    • (2012) Nature , vol.489 , pp. 109-113
    • Sanyal, A.1    Lajoie, B.R.2    Jain, G.3    Dekker, J.4
  • 7
    • 11144339384 scopus 로고    scopus 로고
    • Long-range control of gene expression: emerging mechanisms and disruption in disease
    • Kleinjan D.A., van Heyningen V. Long-range control of gene expression: emerging mechanisms and disruption in disease. Am J Hum Genet 2005, 76:8-32.
    • (2005) Am J Hum Genet , vol.76 , pp. 8-32
    • Kleinjan, D.A.1    van Heyningen, V.2
  • 9
    • 0036923833 scopus 로고    scopus 로고
    • Looping and interaction between hypersensitive sites in the active beta-globin locus
    • Tolhuis B., Palstra R.J., Splinter E., Grosveld F., de Laat W. Looping and interaction between hypersensitive sites in the active beta-globin locus. Mol Cell 2002, 10:1453-1465.
    • (2002) Mol Cell , vol.10 , pp. 1453-1465
    • Tolhuis, B.1    Palstra, R.J.2    Splinter, E.3    Grosveld, F.4    de Laat, W.5
  • 10
    • 84859711142 scopus 로고    scopus 로고
    • Throwing transcription for a loop: expression of the genome in the 3D nucleus
    • Hou C., Corces V.G. Throwing transcription for a loop: expression of the genome in the 3D nucleus. Chromosoma 2012, 121:107-116.
    • (2012) Chromosoma , vol.121 , pp. 107-116
    • Hou, C.1    Corces, V.G.2
  • 12
    • 84861964135 scopus 로고    scopus 로고
    • Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor
    • Deng W., Lee J., Wang H., Miller J., Reik A., Gregory P.D., Dean A., Blobel G.A. Controlling long-range genomic interactions at a native locus by targeted tethering of a looping factor. Cell 2012, 149:1233-1244.
    • (2012) Cell , vol.149 , pp. 1233-1244
    • Deng, W.1    Lee, J.2    Wang, H.3    Miller, J.4    Reik, A.5    Gregory, P.D.6    Dean, A.7    Blobel, G.A.8
  • 13
    • 45749154811 scopus 로고    scopus 로고
    • Maintenance of long-range DNA interactions after inhibition of ongoing RNA polymerase II transcription
    • Palstra R.J., Simonis M., Klous P., Brasset E., Eijkelkamp B., de Laat W. Maintenance of long-range DNA interactions after inhibition of ongoing RNA polymerase II transcription. PLoS ONE 2008, 3:e1661.
    • (2008) PLoS ONE , vol.3
    • Palstra, R.J.1    Simonis, M.2    Klous, P.3    Brasset, E.4    Eijkelkamp, B.5    de Laat, W.6
  • 15
    • 84857192750 scopus 로고    scopus 로고
    • HERC2 rs12913832 modulates human pigmentation by attenuating chromatin-loop formation between a long-range enhancer and the OCA2 promoter
    • Visser M., Kayser M., Palstra R.J. HERC2 rs12913832 modulates human pigmentation by attenuating chromatin-loop formation between a long-range enhancer and the OCA2 promoter. Genome Res 2012, 22:446-455.
    • (2012) Genome Res , vol.22 , pp. 446-455
    • Visser, M.1    Kayser, M.2    Palstra, R.J.3
  • 17
    • 68149183501 scopus 로고    scopus 로고
    • Elucidating the role of 8q24 in colorectal cancer
    • Harismendy O., Frazer K.A. Elucidating the role of 8q24 in colorectal cancer. Nat Genet 2009, 41:868-869.
    • (2009) Nat Genet , vol.41 , pp. 868-869
    • Harismendy, O.1    Frazer, K.A.2
  • 19
    • 77749323471 scopus 로고    scopus 로고
    • Upregulation of c-MYC in cis through a large chromatin loop linked to a cancer risk-associated single-nucleotide polymorphism in colorectal cancer cells
    • Wright J.B., Brown S.J., Cole M.D. Upregulation of c-MYC in cis through a large chromatin loop linked to a cancer risk-associated single-nucleotide polymorphism in colorectal cancer cells. Mol Cell Biol 2010, 30:1411-1420.
    • (2010) Mol Cell Biol , vol.30 , pp. 1411-1420
    • Wright, J.B.1    Brown, S.J.2    Cole, M.D.3
  • 23
    • 84866109279 scopus 로고    scopus 로고
    • Structure and function in the budding yeast nucleus
    • Taddei A., Gasser S.M. Structure and function in the budding yeast nucleus. Genetics 2012, 192:107-129.
    • (2012) Genetics , vol.192 , pp. 107-129
    • Taddei, A.1    Gasser, S.M.2
  • 26
    • 84861095603 scopus 로고    scopus 로고
    • Topological domains in mammalian genomes identified by analysis of chromatin interactions
    • Dixon J.R., Selvaraj S., Yue F., Kim A., Li Y., Shen Y., Hu M., Liu J.S., Ren B. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 2012, 485:376-380.
    • (2012) Nature , vol.485 , pp. 376-380
    • Dixon, J.R.1    Selvaraj, S.2    Yue, F.3    Kim, A.4    Li, Y.5    Shen, Y.6    Hu, M.7    Liu, J.S.8    Ren, B.9
  • 32
    • 33750212321 scopus 로고    scopus 로고
    • Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
    • Simonis M., Klous P., Splinter E., Moshkin Y., Willemsen R., de Wit E., van Steensel B., de Laat W. Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nat Genet 2006, 38:1348-1354.
    • (2006) Nat Genet , vol.38 , pp. 1348-1354
    • Simonis, M.1    Klous, P.2    Splinter, E.3    Moshkin, Y.4    Willemsen, R.5    de Wit, E.6    van Steensel, B.7    de Laat, W.8
  • 33
    • 0041624239 scopus 로고    scopus 로고
    • Regulated recruitment of HP1 to a euchromatic gene induces mitotically heritable, epigenetic gene silencing: a mammalian cell culture model of gene variegation
    • Ayyanathan K., Lechner M.S., Bell P., Maul G.G., Schultz D.C., Yamada Y., Tanaka K., Torigoe K., Rauscher F.J. Regulated recruitment of HP1 to a euchromatic gene induces mitotically heritable, epigenetic gene silencing: a mammalian cell culture model of gene variegation. Genes Dev 2003, 17:1855-1869.
    • (2003) Genes Dev , vol.17 , pp. 1855-1869
    • Ayyanathan, K.1    Lechner, M.S.2    Bell, P.3    Maul, G.G.4    Schultz, D.C.5    Yamada, Y.6    Tanaka, K.7    Torigoe, K.8    Rauscher, F.J.9
  • 34
    • 0035150980 scopus 로고    scopus 로고
    • Interphase movements of a DNA chromosome region modulated by VP16 transcriptional activator
    • Tumbar T., Belmont A.S. Interphase movements of a DNA chromosome region modulated by VP16 transcriptional activator. Nat Cell Biol 2001, 3:134-139.
    • (2001) Nat Cell Biol , vol.3 , pp. 134-139
    • Tumbar, T.1    Belmont, A.S.2
  • 35
    • 40749122641 scopus 로고    scopus 로고
    • Transcriptional repression mediated by repositioning of genes to the nuclear lamina
    • Reddy K.L., Zullo J.M., Bertolino E., Singh H. Transcriptional repression mediated by repositioning of genes to the nuclear lamina. Nature 2008, 452:243-247.
    • (2008) Nature , vol.452 , pp. 243-247
    • Reddy, K.L.1    Zullo, J.M.2    Bertolino, E.3    Singh, H.4
  • 36
    • 38349043904 scopus 로고    scopus 로고
    • A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence
    • Kumaran R.I., Spector D.L. A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence. J Cell Biol 2008, 180:51-65.
    • (2008) J Cell Biol , vol.180 , pp. 51-65
    • Kumaran, R.I.1    Spector, D.L.2
  • 38
    • 65249150266 scopus 로고    scopus 로고
    • Glucocorticoid receptor activation of the Ciz1-Lcn2 locus by long range interactions
    • Hakim O., John S., Ling J.Q., Biddie S.C., Hoffman A.R., Hager G.L. Glucocorticoid receptor activation of the Ciz1-Lcn2 locus by long range interactions. J Biol Chem 2009, 284:6048-6052.
    • (2009) J Biol Chem , vol.284 , pp. 6048-6052
    • Hakim, O.1    John, S.2    Ling, J.Q.3    Biddie, S.C.4    Hoffman, A.R.5    Hager, G.L.6
  • 42
    • 0037416135 scopus 로고    scopus 로고
    • Chromosome order in HeLa cells changes during mitosis and early G1, but is stably maintained during subsequent interphase stages
    • Walter J., Schermelleh L., Cremer M., Tashiro S., Cremer T. Chromosome order in HeLa cells changes during mitosis and early G1, but is stably maintained during subsequent interphase stages. J Cell Biol 2003, 160:685-697.
    • (2003) J Cell Biol , vol.160 , pp. 685-697
    • Walter, J.1    Schermelleh, L.2    Cremer, M.3    Tashiro, S.4    Cremer, T.5
  • 43
    • 1142281997 scopus 로고    scopus 로고
    • The radial positioning of chromatin is not inherited through mitosis but is established de novo in early G1
    • Thomson I., Gilchrist S., Bickmore W.A., Chubb J.R. The radial positioning of chromatin is not inherited through mitosis but is established de novo in early G1. Curr Biol 2004, 14:166-172.
    • (2004) Curr Biol , vol.14 , pp. 166-172
    • Thomson, I.1    Gilchrist, S.2    Bickmore, W.A.3    Chubb, J.R.4
  • 44
    • 0036006293 scopus 로고    scopus 로고
    • Chromatin motion is constrained by association with nuclear compartments in human cells
    • Chubb J.R., Boyle S., Perry P., Bickmore W.A. Chromatin motion is constrained by association with nuclear compartments in human cells. Curr Biol 2002, 12:439-445.
    • (2002) Curr Biol , vol.12 , pp. 439-445
    • Chubb, J.R.1    Boyle, S.2    Perry, P.3    Bickmore, W.A.4
  • 50
    • 0042880630 scopus 로고    scopus 로고
    • Spatial organization of gene expression: the active chromatin hub
    • de Laat W., Grosveld F. Spatial organization of gene expression: the active chromatin hub. Chromosome Res 2003, 11:447-459.
    • (2003) Chromosome Res , vol.11 , pp. 447-459
    • de Laat, W.1    Grosveld, F.2
  • 53
    • 83255189766 scopus 로고    scopus 로고
    • DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes
    • De S., Michor F. DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes. Nat Biotechnol 2011, 29:1103-1108.
    • (2011) Nat Biotechnol , vol.29 , pp. 1103-1108
    • De, S.1    Michor, F.2
  • 54
    • 83255165727 scopus 로고    scopus 로고
    • High order chromatin architecture shapes the landscape of chromosomal alterations in cancer
    • Fudenberg G., Getz G., Meyerson M., Mirny L.A. High order chromatin architecture shapes the landscape of chromosomal alterations in cancer. Nat Biotechnol 2011, 29:1109-1113.
    • (2011) Nat Biotechnol , vol.29 , pp. 1109-1113
    • Fudenberg, G.1    Getz, G.2    Meyerson, M.3    Mirny, L.A.4
  • 55
    • 79151478493 scopus 로고    scopus 로고
    • Genome organization influences partner selection for chromosomal rearrangements
    • Wijchers P.J., de Laat W. Genome organization influences partner selection for chromosomal rearrangements. Trends Genet 2011, 27:63-71.
    • (2011) Trends Genet , vol.27 , pp. 63-71
    • Wijchers, P.J.1    de Laat, W.2
  • 57
    • 79952638264 scopus 로고    scopus 로고
    • Cellular decision making and biological noise: from microbes to mammals
    • Balazsi G., van Oudenaarden A., Collins J.J. Cellular decision making and biological noise: from microbes to mammals. Cell 2011, 144:910-925.
    • (2011) Cell , vol.144 , pp. 910-925
    • Balazsi, G.1    van Oudenaarden, A.2    Collins, J.J.3
  • 58
    • 77249114260 scopus 로고    scopus 로고
    • Variability in gene expression underlies incomplete penetrance
    • Raj A., Rifkin S.A., Andersen E., van Oudenaarden A. Variability in gene expression underlies incomplete penetrance. Nature 2010, 463:913-918.
    • (2010) Nature , vol.463 , pp. 913-918
    • Raj, A.1    Rifkin, S.A.2    Andersen, E.3    van Oudenaarden, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.