-
2
-
-
75949088274
-
DNA zip codes control an ancient mechanism for gene targeting to the nuclear periphery
-
S. Ahmed, D.G. Brickner, W.H. Light, I. Cajigas, M. McDonough, A.B. Froyshteter, T. Volpe, and J.H. Brickner DNA zip codes control an ancient mechanism for gene targeting to the nuclear periphery Nat. Cell Biol. 12 2010 111 118
-
(2010)
Nat. Cell Biol.
, vol.12
, pp. 111-118
-
-
Ahmed, S.1
Brickner, D.G.2
Light, W.H.3
Cajigas, I.4
McDonough, M.5
Froyshteter, A.B.6
Volpe, T.7
Brickner, J.H.8
-
4
-
-
23944495647
-
Regulation of interleukin 7-dependent immunoglobulin heavy-chain variable gene rearrangements by transcription factor STAT5
-
E. Bertolino, K. Reddy, K.L. Medina, E. Parganas, J. Ihle, and H. Singh Regulation of interleukin 7-dependent immunoglobulin heavy-chain variable gene rearrangements by transcription factor STAT5 Nat. Immunol. 6 2005 836 843
-
(2005)
Nat. Immunol.
, vol.6
, pp. 836-843
-
-
Bertolino, E.1
Reddy, K.2
Medina, K.L.3
Parganas, E.4
Ihle, J.5
Singh, H.6
-
5
-
-
78249276172
-
Hdac3 is essential for the maintenance of chromatin structure and genome stability
-
S. Bhaskara, S.K. Knutson, G. Jiang, M.B. Chandrasekharan, A.J. Wilson, S. Zheng, A. Yenamandra, K. Locke, J.L. Yuan, and A.R. Bonine-Summers Hdac3 is essential for the maintenance of chromatin structure and genome stability Cancer Cell 18 2010 436 447
-
(2010)
Cancer Cell
, vol.18
, pp. 436-447
-
-
Bhaskara, S.1
Knutson, S.K.2
Jiang, G.3
Chandrasekharan, M.B.4
Wilson, A.J.5
Zheng, S.6
Yenamandra, A.7
Locke, K.8
Yuan, J.L.9
Bonine-Summers, A.R.10
-
6
-
-
0029978751
-
The GAGA factor is required in the early Drosophila embryo not only for transcriptional regulation but also for nuclear division
-
K.M. Bhat, G. Farkas, F. Karch, H. Gyurkovics, J. Gausz, and P. Schedl The GAGA factor is required in the early Drosophila embryo not only for transcriptional regulation but also for nuclear division Development 122 1996 1113 1124
-
(1996)
Development
, vol.122
, pp. 1113-1124
-
-
Bhat, K.M.1
Farkas, G.2
Karch, F.3
Gyurkovics, H.4
Gausz, J.5
Schedl, P.6
-
7
-
-
2942691957
-
Antisense intergenic transcription in V(D)J recombination
-
D.J. Bolland, A.L. Wood, C.M. Johnston, S.F. Bunting, G. Morgan, L. Chakalova, P.J. Fraser, and A.E. Corcoran Antisense intergenic transcription in V(D)J recombination Nat. Immunol. 5 2004 630 637
-
(2004)
Nat. Immunol.
, vol.5
, pp. 630-637
-
-
Bolland, D.J.1
Wood, A.L.2
Johnston, C.M.3
Bunting, S.F.4
Morgan, G.5
Chakalova, L.6
Fraser, P.J.7
Corcoran, A.E.8
-
8
-
-
34047262162
-
Transcriptional regulation at the nuclear pore complex
-
C.R. Brown, and P.A. Silver Transcriptional regulation at the nuclear pore complex Curr. Opin. Genet. Dev. 17 2007 100 106
-
(2007)
Curr. Opin. Genet. Dev.
, vol.17
, pp. 100-106
-
-
Brown, C.R.1
Silver, P.A.2
-
9
-
-
67649873461
-
Non-specific interactions are sufficient to explain the position of heterochromatic chromocenters and nucleoli in interphase nuclei
-
S. de Nooijer, J. Wellink, B. Mulder, and T. Bisseling Non-specific interactions are sufficient to explain the position of heterochromatic chromocenters and nucleoli in interphase nuclei Nucleic Acids Res. 37 2009 3558 3568
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 3558-3568
-
-
De Nooijer, S.1
Wellink, J.2
Mulder, B.3
Bisseling, T.4
-
10
-
-
0033215105
-
Site-specific chromosomal integration in mammalian cells: Highly efficient CRE recombinase-mediated cassette exchange
-
Y.Q. Feng, J. Seibler, R. Alami, A. Eisen, K.A. Westerman, P. Leboulch, S. Fiering, and E.E. Bouhassira Site-specific chromosomal integration in mammalian cells: highly efficient CRE recombinase-mediated cassette exchange J. Mol. Biol. 292 1999 779 785
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 779-785
-
-
Feng, Y.Q.1
Seibler, J.2
Alami, R.3
Eisen, A.4
Westerman, K.A.5
Leboulch, P.6
Fiering, S.7
Bouhassira, E.E.8
-
11
-
-
41949121084
-
Recruitment to the nuclear periphery can alter expression of genes in human cells
-
L.E. Finlan, D. Sproul, I. Thomson, S. Boyle, E. Kerr, P. Perry, B. Ylstra, J.R. Chubb, and W.A. Bickmore Recruitment to the nuclear periphery can alter expression of genes in human cells PLoS Genet. 4 2008 e1000039
-
(2008)
PLoS Genet.
, vol.4
, pp. 1000039
-
-
Finlan, L.E.1
Sproul, D.2
Thomson, I.3
Boyle, S.4
Kerr, E.5
Perry, P.6
Ylstra, B.7
Chubb, J.R.8
Bickmore, W.A.9
-
12
-
-
0027934564
-
C-Krox, a transcriptional regulator of type i collagen gene expression, is preferentially expressed in skin
-
P. Galéra, M. Musso, P. Ducy, and G. Karsenty c-Krox, a transcriptional regulator of type I collagen gene expression, is preferentially expressed in skin Proc. Natl. Acad. Sci. USA 91 1994 9372 9376
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 9372-9376
-
-
Galéra, P.1
Musso, M.2
Ducy, P.3
Karsenty, G.4
-
13
-
-
45149084413
-
Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
-
L. Guelen, L. Pagie, E. Brasset, W. Meuleman, M.B. Faza, W. Talhout, B.H. Eussen, A. de Klein, L. Wessels, W. de Laat, and B. van Steensel Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions Nature 453 2008 948 951
-
(2008)
Nature
, vol.453
, pp. 948-951
-
-
Guelen, L.1
Pagie, L.2
Brasset, E.3
Meuleman, W.4
Faza, M.B.5
Talhout, W.6
Eussen, B.H.7
De Klein, A.8
Wessels, L.9
De Laat, W.10
Van Steensel, B.11
-
14
-
-
77952300542
-
The role of ThPOK in control of CD4/CD8 lineage commitment
-
X. He, K. Park, and D.J. Kappes The role of ThPOK in control of CD4/CD8 lineage commitment Annu. Rev. Immunol. 28 2010 295 320
-
(2010)
Annu. Rev. Immunol.
, vol.28
, pp. 295-320
-
-
He, X.1
Park, K.2
Kappes, D.J.3
-
15
-
-
77954818442
-
Genome-nuclear lamina interactions and gene regulation
-
J. Kind, and B. van Steensel Genome-nuclear lamina interactions and gene regulation Curr. Opin. Cell Biol. 22 2010 320 325
-
(2010)
Curr. Opin. Cell Biol.
, vol.22
, pp. 320-325
-
-
Kind, J.1
Van Steensel, B.2
-
16
-
-
0037023361
-
Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development
-
S.T. Kosak, J.A. Skok, K.L. Medina, R. Riblet, M.M. Le Beau, A.G. Fisher, and H. Singh Subnuclear compartmentalization of immunoglobulin loci during lymphocyte development Science 296 2002 158 162
-
(2002)
Science
, vol.296
, pp. 158-162
-
-
Kosak, S.T.1
Skok, J.A.2
Medina, K.L.3
Riblet, R.4
Le Beau, M.M.5
Fisher, A.G.6
Singh, H.7
-
17
-
-
38349043904
-
A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence
-
R.I. Kumaran, and D.L. Spector A genetic locus targeted to the nuclear periphery in living cells maintains its transcriptional competence J. Cell Biol. 180 2008 51 65
-
(2008)
J. Cell Biol.
, vol.180
, pp. 51-65
-
-
Kumaran, R.I.1
Spector, D.L.2
-
18
-
-
0041669439
-
Nuclear speckles: A model for nuclear organelles
-
A.I. Lamond, and D.L. Spector Nuclear speckles: a model for nuclear organelles Nat. Rev. Mol. Cell Biol. 4 2003 605 612
-
(2003)
Nat. Rev. Mol. Cell Biol.
, vol.4
, pp. 605-612
-
-
Lamond, A.I.1
Spector, D.L.2
-
19
-
-
66049140973
-
Dynamic patterns of histone methylation are associated with ontogenic expression of the Cyp3a genes during mouse liver maturation
-
Y. Li, Y. Cui, S.N. Hart, C.D. Klaassen, and X.B. Zhong Dynamic patterns of histone methylation are associated with ontogenic expression of the Cyp3a genes during mouse liver maturation Mol. Pharmacol. 75 2009 1171 1179
-
(2009)
Mol. Pharmacol.
, vol.75
, pp. 1171-1179
-
-
Li, Y.1
Cui, Y.2
Hart, S.N.3
Klaassen, C.D.4
Zhong, X.B.5
-
20
-
-
33947715599
-
Barrier-to-autointegration factor - A BAFfling little protein
-
A. Margalit, A. Brachner, J. Gotzmann, R. Foisner, and Y. Gruenbaum Barrier-to-autointegration factor - a BAFfling little protein Trends Cell Biol. 17 2007 202 208
-
(2007)
Trends Cell Biol.
, vol.17
, pp. 202-208
-
-
Margalit, A.1
Brachner, A.2
Gotzmann, J.3
Foisner, R.4
Gruenbaum, Y.5
-
22
-
-
77950920142
-
The spatial dynamics of tissue-specific promoters during C. elegans development
-
P. Meister, B.D. Towbin, B.L. Pike, A. Ponti, and S.M. Gasser The spatial dynamics of tissue-specific promoters during C. elegans development Genes Dev. 24 2010 766 782
-
(2010)
Genes Dev.
, vol.24
, pp. 766-782
-
-
Meister, P.1
Towbin, B.D.2
Pike, B.L.3
Ponti, A.4
Gasser, S.M.5
-
23
-
-
0036183641
-
Critical residues within the BTB domain of PLZF and Bcl-6 modulate interaction with corepressors
-
A. Melnick, G. Carlile, K.F. Ahmad, C.-L. Kiang, C. Corcoran, V. Bardwell, G.G. Prive, and J.D. Licht Critical residues within the BTB domain of PLZF and Bcl-6 modulate interaction with corepressors Mol. Cell. Biol. 22 2002 1804 1818
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 1804-1818
-
-
Melnick, A.1
Carlile, G.2
Ahmad, K.F.3
Kiang, C.-L.4
Corcoran, C.5
Bardwell, V.6
Prive, G.G.7
Licht, J.D.8
-
24
-
-
62849083222
-
The emerging role of nuclear architecture in DNA repair and genome maintenance
-
T. Misteli, and E. Soutoglou The emerging role of nuclear architecture in DNA repair and genome maintenance Nat. Rev. Mol. Cell Biol. 10 2009 243 254
-
(2009)
Nat. Rev. Mol. Cell Biol.
, vol.10
, pp. 243-254
-
-
Misteli, T.1
Soutoglou, E.2
-
25
-
-
77952576224
-
Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation
-
D. Peric-Hupkes, W. Meuleman, L. Pagie, S.W.M. Bruggeman, I. Solovei, W. Brugman, S. Gräf, P. Flicek, R.M. Kerkhoven, and M. van Lohuizen Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation Mol. Cell 38 2010 603 613
-
(2010)
Mol. Cell
, vol.38
, pp. 603-613
-
-
Peric-Hupkes, D.1
Meuleman, W.2
Pagie, L.3
Bruggeman, S.W.M.4
Solovei, I.5
Brugman, W.6
Gräf, S.7
Flicek, P.8
Kerkhoven, R.M.9
Van Lohuizen, M.10
-
26
-
-
38849183559
-
Sparse representation and Bayesian detection of genome copy number alterations from microarray data
-
R. Pique-Regi, J. Monso-Varona, A. Ortega, R.C. Seeger, T.J. Triche, and S. Asgharzadeh Sparse representation and Bayesian detection of genome copy number alterations from microarray data Bioinformatics 24 2008 309 318
-
(2008)
Bioinformatics
, vol.24
, pp. 309-318
-
-
Pique-Regi, R.1
Monso-Varona, J.2
Ortega, A.3
Seeger, R.C.4
Triche, T.J.5
Asgharzadeh, S.6
-
27
-
-
0028606857
-
The Drosophila GAGA transcription factor is associated with specific regions of heterochromatin throughout the cell cycle
-
J.W. Raff, R. Kellum, and B. Alberts The Drosophila GAGA transcription factor is associated with specific regions of heterochromatin throughout the cell cycle EMBO J. 13 1994 5977 5983
-
(1994)
EMBO J.
, vol.13
, pp. 5977-5983
-
-
Raff, J.W.1
Kellum, R.2
Alberts, B.3
-
28
-
-
33744779614
-
The locus control region is required for association of the murine beta-globin locus with engaged transcription factories during erythroid maturation
-
T. Ragoczy, M.A. Bender, A. Telling, R. Byron, and M. Groudine The locus control region is required for association of the murine beta-globin locus with engaged transcription factories during erythroid maturation Genes Dev. 20 2006 1447 1457
-
(2006)
Genes Dev.
, vol.20
, pp. 1447-1457
-
-
Ragoczy, T.1
Bender, M.A.2
Telling, A.3
Byron, R.4
Groudine, M.5
-
29
-
-
40749122641
-
Transcriptional repression mediated by repositioning of genes to the nuclear lamina
-
K.L. Reddy, J.M. Zullo, E. Bertolino, and H. Singh Transcriptional repression mediated by repositioning of genes to the nuclear lamina Nature 452 2008 243 247
-
(2008)
Nature
, vol.452
, pp. 243-247
-
-
Reddy, K.L.1
Zullo, J.M.2
Bertolino, E.3
Singh, H.4
-
30
-
-
0030461543
-
In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition
-
C.C. Robinett, A. Straight, G. Li, C. Willhelm, G. Sudlow, A. Murray, and A.S. Belmont In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition J. Cell Biol. 135 1996 1685 1700
-
(1996)
J. Cell Biol.
, vol.135
, pp. 1685-1700
-
-
Robinett, C.C.1
Straight, A.2
Li, G.3
Willhelm, C.4
Sudlow, G.5
Murray, A.6
Belmont, A.S.7
-
31
-
-
34249668426
-
Proteins that associate with lamins: Many faces, many functions
-
E.C. Schirmer, and R. Foisner Proteins that associate with lamins: many faces, many functions Exp. Cell Res. 313 2007 2167 2179
-
(2007)
Exp. Cell Res.
, vol.313
, pp. 2167-2179
-
-
Schirmer, E.C.1
Foisner, R.2
-
32
-
-
58049195492
-
The A- and B-type nuclear lamin networks: Microdomains involved in chromatin organization and transcription
-
T. Shimi, K. Pfleghaar, S.-i. Kojima, C.-G. Pack, I. Solovei, A.E. Goldman, S.A. Adam, D.K. Shumaker, M. Kinjo, T. Cremer, and R.D. Goldman The A- and B-type nuclear lamin networks: microdomains involved in chromatin organization and transcription Genes Dev. 22 2008 3409 3421
-
(2008)
Genes Dev.
, vol.22
, pp. 3409-3421
-
-
Shimi, T.1
Pfleghaar, K.2
Kojima, S.-I.3
Pack, C.-G.4
Solovei, I.5
Goldman, A.E.6
Adam, S.A.7
Shumaker, D.K.8
Kinjo, M.9
Cremer, T.10
Goldman, R.D.11
-
33
-
-
26444589253
-
The nuclear envelope protein and transcriptional repressor LAP2beta interacts with HDAC3 at the nuclear periphery, and induces histone H4 deacetylation
-
R. Somech, S. Shaklai, O. Geller, N. Amariglio, A.J. Simon, G. Rechavi, and E.N. Gal-Yam The nuclear envelope protein and transcriptional repressor LAP2beta interacts with HDAC3 at the nuclear periphery, and induces histone H4 deacetylation J. Cell Sci. 118 2005 4017 4025
-
(2005)
J. Cell Sci.
, vol.118
, pp. 4017-4025
-
-
Somech, R.1
Shaklai, S.2
Geller, O.3
Amariglio, N.4
Simon, A.J.5
Rechavi, G.6
Gal-Yam, E.N.7
-
34
-
-
67649766870
-
Transcription factories: Gene expression in unions?
-
H. Sutherland, and W.A. Bickmore Transcription factories: gene expression in unions? Nat. Rev. Genet. 10 2009 457 466
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 457-466
-
-
Sutherland, H.1
Bickmore, W.A.2
-
35
-
-
1942503933
-
Separation of silencing from perinuclear anchoring functions in yeast Ku80, Sir4 and Esc1 proteins
-
A. Taddei, F. Hediger, F.R. Neumann, C. Bauer, and S.M. Gasser Separation of silencing from perinuclear anchoring functions in yeast Ku80, Sir4 and Esc1 proteins EMBO J. 23 2004 1301 1312
-
(2004)
EMBO J.
, vol.23
, pp. 1301-1312
-
-
Taddei, A.1
Hediger, F.2
Neumann, F.R.3
Bauer, C.4
Gasser, S.M.5
-
37
-
-
34250791291
-
Detection of in vivo protein-DNA interactions using DamID in mammalian cells
-
M.J. Vogel, D. Peric-Hupkes, and B. van Steensel Detection of in vivo protein-DNA interactions using DamID in mammalian cells Nat. Protoc. 2 2007 1467 1478
-
(2007)
Nat. Protoc.
, vol.2
, pp. 1467-1478
-
-
Vogel, M.J.1
Peric-Hupkes, D.2
Van Steensel, B.3
-
38
-
-
67649947773
-
Sizing up the nucleus: Nuclear shape, size and nuclear envelope assembly
-
M. Webster, K.L. Witkin, and O. Cohen-Fix Sizing up the nucleus: nuclear shape, size and nuclear envelope assembly J. Cell Sci. 122 2009 1477 1486
-
(2009)
J. Cell Sci.
, vol.122
, pp. 1477-1486
-
-
Webster, M.1
Witkin, K.L.2
Cohen-Fix, O.3
-
39
-
-
59149083658
-
Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells
-
B. Wen, H. Wu, Y. Shinkai, R.A. Irizarry, and A.P. Feinberg Large histone H3 lysine 9 dimethylated chromatin blocks distinguish differentiated from embryonic stem cells Nat. Genet. 41 2009 246 250
-
(2009)
Nat. Genet.
, vol.41
, pp. 246-250
-
-
Wen, B.1
Wu, H.2
Shinkai, Y.3
Irizarry, R.A.4
Feinberg, A.P.5
-
40
-
-
21744452476
-
Sites that direct nuclear compartmentalization are near the 5′ end of the mouse immunoglobulin heavy-chain locus
-
Q. Yang, R. Riblet, and C.L. Schildkraut Sites that direct nuclear compartmentalization are near the 5′ end of the mouse immunoglobulin heavy-chain locus Mol. Cell. Biol. 25 2005 6021 6030
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 6021-6030
-
-
Yang, Q.1
Riblet, R.2
Schildkraut, C.L.3
-
41
-
-
73349139918
-
G9a selectively represses a class of late-replicating genes at the nuclear periphery
-
T. Yokochi, K. Poduch, T. Ryba, J. Lu, I. Hiratani, M. Tachibana, Y. Shinkai, and D.M. Gilbert G9a selectively represses a class of late-replicating genes at the nuclear periphery Proc. Natl. Acad. Sci. USA 106 2009 19363 19368
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 19363-19368
-
-
Yokochi, T.1
Poduch, K.2
Ryba, T.3
Lu, J.4
Hiratani, I.5
Tachibana, M.6
Shinkai, Y.7
Gilbert, D.M.8
-
42
-
-
0037925529
-
A SANT motif in the SMRT co-repressor interprets the histone code and promotes histone deacetylation
-
J. Yu, Y. Li, T. Ishizuka, M.G. Guenther, and M.A. Lazar A SANT motif in the SMRT co-repressor interprets the histone code and promotes histone deacetylation EMBO J. 22 2003 3403 3410
-
(2003)
EMBO J.
, vol.22
, pp. 3403-3410
-
-
Yu, J.1
Li, Y.2
Ishizuka, T.3
Guenther, M.G.4
Lazar, M.A.5
-
43
-
-
4544255977
-
Transcription-dependent spatial arrangements of CFTR and adjacent genes in human cell nuclei
-
D. Zink, M.D. Amaral, A. Englmann, S. Lang, L.A. Clarke, C. Rudolph, F. Alt, K. Luther, C. Braz, and N. Sadoni Transcription-dependent spatial arrangements of CFTR and adjacent genes in human cell nuclei J. Cell Biol. 166 2004 815 825
-
(2004)
J. Cell Biol.
, vol.166
, pp. 815-825
-
-
Zink, D.1
Amaral, M.D.2
Englmann, A.3
Lang, S.4
Clarke, L.A.5
Rudolph, C.6
Alt, F.7
Luther, K.8
Braz, C.9
Sadoni, N.10
-
44
-
-
38849183559
-
Sparse representation and Bayesian detection of genome copy number alterations from microarray data
-
Pique-Regi, R.; Monso-Varona, J.; Ortega, A.; Seeger, R.C.; Triche, T.J.; Asgharzadeh, S. (2008). Sparse representation and Bayesian detection of genome copy number alterations from microarray data. Bioinformatics 24, 309-318.
-
(2008)
Bioinformatics
, vol.24
, pp. 309-318
-
-
Pique-Regi, R.1
Monso-Varona, J.2
Ortega, A.3
Seeger, R.C.4
Triche, T.J.5
Asgharzadeh, S.6
-
45
-
-
40749122641
-
Transcriptional repression mediated by repositioning of genes to the nuclear lamina
-
Reddy, K.L.; Zullo, J.M.; Bertolino, E.; Singh, H. (2008). Transcriptional repression mediated by repositioning of genes to the nuclear lamina. Nature 452, 243-247.
-
(2008)
Nature
, vol.452
, pp. 243-247
-
-
Reddy, K.L.1
Zullo, J.M.2
Bertolino, E.3
Singh, H.4
-
46
-
-
34250791291
-
Detection of in vivo protein-DNA interactions using DamID in mammalian cells
-
Vogel, M.J.; Peric-Hupkes, D.; van Steensel, B. (2007). Detection of in vivo protein-DNA interactions using DamID in mammalian cells. Nat. Protoc. 2, 1467-1478.
-
(2007)
Nat. Protoc.
, vol.2
, pp. 1467-1478
-
-
Vogel, M.J.1
Peric-Hupkes, D.2
Van Steensel, B.3
|