-
1
-
-
25144450143
-
Contributions of low molecule number and chromosomal positioning to stochastic gene expression
-
Becskei A, Kaufmann BB, van Oudenaarden A (2005) Contributions of low molecule number and chromosomal positioning to stochastic gene expression. Nat Genet 37: 937-944.
-
(2005)
Nat Genet
, vol.37
, pp. 937-944
-
-
Becskei, A.1
Kaufmann, B.B.2
Van Oudenaarden, A.3
-
4
-
-
28944434119
-
Real-time kinetics of gene activity in individual bacteria
-
Golding I, Paulsson J, Zawilski SM, Cox EC (2005) Real-time kinetics of gene activity in individual bacteria. Cell 123: 1025-1036.
-
(2005)
Cell
, vol.123
, pp. 1025-1036
-
-
Golding, I.1
Paulsson, J.2
Zawilski, S.M.3
Cox, E.C.4
-
5
-
-
2942718723
-
Control of stochasticity in eukaryotic gene expression
-
Raser JM, O'Shea EK (2004) Control of stochasticity in eukaryotic gene expression. Science 304: 1811-1814.
-
(2004)
Science
, vol.304
, pp. 1811-1814
-
-
Raser, J.M.1
O'Shea, E.K.2
-
6
-
-
15544371346
-
Gene regulation at the single-cell level
-
Rosenfeld N, Young JW, Alon U, Swain PS, Elowitz MB (2005) Gene regulation at the single-cell level. Science 307: 1962-1965.
-
(2005)
Science
, vol.307
, pp. 1962-1965
-
-
Rosenfeld, N.1
Young, J.W.2
Alon, U.3
Swain, P.S.4
Elowitz, M.B.5
-
7
-
-
0036578645
-
Regulation of noise in the expression of a single gene
-
Ozbudak EM, Thattai M, Kurtser I, Grossman AD, van Oudenaarden A (2002) Regulation of noise in the expression of a single gene. Nat Genet 31: 69-73.
-
(2002)
Nat Genet
, vol.31
, pp. 69-73
-
-
Ozbudak, E.M.1
Thattai, M.2
Kurtser, I.3
Grossman, A.D.4
Van Oudenaarden, A.5
-
8
-
-
18744361871
-
Enhancement of cellular memory by reducing stochastic transitions
-
Acar M, Becskei A, van Oudenaarden A (2005) Enhancement of cellular memory by reducing stochastic transitions. Nature 435: 228-232.
-
(2005)
Nature
, vol.435
, pp. 228-232
-
-
Acar, M.1
Becskei, A.2
Van Oudenaarden, A.3
-
9
-
-
0842332406
-
Dynamics of the p53-Mdm2 feedback loop in individual cells
-
Lahav G, Rosenfeld N, Sigal A, Geva-Zatorsky N, Levine AJ, et al. (2004) Dynamics of the p53-Mdm2 feedback loop in individual cells. Nat Genet 36: 147-150.
-
(2004)
Nat Genet
, vol.36
, pp. 147-150
-
-
Lahav, G.1
Rosenfeld, N.2
Sigal, A.3
Geva-Zatorsky, N.4
Levine, A.J.5
-
10
-
-
17644423916
-
Bistability in the Bacillus subtilis K-state (competence) system requires a positive feedback loop
-
Maamar H, Dubnau D (2005) Bistability in the Bacillus subtilis K-state (competence) system requires a positive feedback loop. Mol Microbiol 56: 615-624.
-
(2005)
Mol Microbiol
, vol.56
, pp. 615-624
-
-
Maamar, H.1
Dubnau, D.2
-
11
-
-
0031879114
-
Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells
-
Arkin A, Ross J, McAdams HH (1998) Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells. Genetics 149: 1633-1648.
-
(1998)
Genetics
, vol.149
, pp. 1633-1648
-
-
Arkin, A.1
Ross, J.2
McAdams, H.H.3
-
12
-
-
22744441386
-
Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity
-
Weinberger LS, Burnett JC, Toettcher JE, Arkin AP, Schaffer DV (2005) Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 Tat fluctuations drive phenotypic diversity. Cell 122: 169-182.
-
(2005)
Cell
, vol.122
, pp. 169-182
-
-
Weinberger, L.S.1
Burnett, J.C.2
Toettcher, J.E.3
Arkin, A.P.4
Schaffer, D.V.5
-
13
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Elowitz MB, Leibler S (2000) A synthetic oscillatory network of transcriptional regulators. Nature 403: 335-338.
-
(2000)
Nature
, vol.403
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
-
14
-
-
17144456808
-
Positive feedback in eukaryotic gene networks: Cell differentiation by graded to binary response conversion
-
Becskei A, Seraphin B, Serrano L (2001) Positive feedback in eukaryotic gene networks: Cell differentiation by graded to binary response conversion. Embo J 20: 2528-2535.
-
(2001)
Embo J
, vol.20
, pp. 2528-2535
-
-
Becskei, A.1
Seraphin, B.2
Serrano, L.3
-
15
-
-
0036790975
-
Intrinsic and extrinsic contributions to stochasticity in gene expression
-
Swain PS, Elowitz MB, Siggia ED (2002) Intrinsic and extrinsic contributions to stochasticity in gene expression. Proc Natl Acad Sci U S A 99: 12795-12800.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 12795-12800
-
-
Swain, P.S.1
Elowitz, M.B.2
Siggia, E.D.3
-
16
-
-
32844454497
-
Origins of extrinsic variability in eukaryotic gene expression
-
Volfson D, Marciniak J, Blake WJ, Ostroff N, Tsimring LS, et al. (2006) Origins of extrinsic variability in eukaryotic gene expression. Nature 439: 861-864.
-
(2006)
Nature
, vol.439
, pp. 861-864
-
-
Volfson, D.1
Marciniak, J.2
Blake, W.J.3
Ostroff, N.4
Tsimring, L.S.5
-
17
-
-
33745220278
-
Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
-
Newman JR, Ghaemmaghami S, Ihmels J, Breslow DK, Noble M, et al. (2006) Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nature 411: 840-846.
-
(2006)
Nature
, vol.411
, pp. 840-846
-
-
Newman, J.R.1
Ghaemmaghami, S.2
Ihmels, J.3
Breslow, D.K.4
Noble, M.5
-
18
-
-
33745287724
-
Noise in protein expression scales with natural protein abundance
-
Bar-Even A, Paulsson J, Maheshri N, Carmi M, O'Shea E, et al. (2006) Noise in protein expression scales with natural protein abundance. Nat Genet 38: 636-643.
-
(2006)
Nat Genet
, vol.38
, pp. 636-643
-
-
Bar-Even, A.1
Paulsson, J.2
Maheshri, N.3
Carmi, M.4
O'Shea, E.5
-
19
-
-
0000111447
-
Markovian modeling of gene-product synthesis
-
Peccoud J, Ycart B (1995) Markovian modeling of gene-product synthesis. Theor Population Biol 48: 222-234.
-
(1995)
Theor Population Biol
, vol.48
, pp. 222-234
-
-
Peccoud, J.1
Ycart, B.2
-
20
-
-
25844433114
-
Gene expression profiling in single cells from the pancreatic islets of Langerhans reveals lognormal distribution of mRNA levels
-
Bengtsson M, Stahlberg A, Rorsman P, Kubista M (2005) Gene expression profiling in single cells from the pancreatic islets of Langerhans reveals lognormal distribution of mRNA levels. Genome Res 15: 1388-1392.
-
(2005)
Genome Res
, vol.15
, pp. 1388-1392
-
-
Bengtsson, M.1
Stahlberg, A.2
Rorsman, P.3
Kubista, M.4
-
21
-
-
0037317674
-
Dynamic patterns of growth hormone gene transcription in individual living pituitary cells
-
Norris AJ, Stirland JA, McFerran DW, Seymour ZC, Spiller DG, et al. (2003) Dynamic patterns of growth hormone gene transcription in individual living pituitary cells. Mol Endocrinol 17: 193-202.
-
(2003)
Mol Endocrinol
, vol.17
, pp. 193-202
-
-
Norris, A.J.1
Stirland, J.A.2
McFerran, D.W.3
Seymour, Z.C.4
Spiller, D.G.5
-
22
-
-
0029155607
-
Enhancers increase the probability but not the level of gene expression
-
Walters MC, Fiering S, Eidemiller J, Magis W, Groudine M, et al. (1995) Enhancers increase the probability but not the level of gene expression. Proc Natl Acad Sci U S A 92: 7125-7129.
-
(1995)
Proc Natl Acad Sci U S A
, vol.92
, pp. 7125-7129
-
-
Walters, M.C.1
Fiering, S.2
Eidemiller, J.3
Magis, W.4
Groudine, M.5
-
24
-
-
0025127307
-
The dose dependence of glucocorticoid-inducible gene expression results from changes in the number of transcriptionally active templates
-
Ko MS, Nakauchi H, Takahashi N (1990) The dose dependence of glucocorticoid-inducible gene expression results from changes in the number of transcriptionally active templates. EMBO J 9: 2835-2842.
-
(1990)
EMBO J
, vol.9
, pp. 2835-2842
-
-
Ko, M.S.1
Nakauchi, H.2
Takahashi, N.3
-
25
-
-
28044451048
-
Mechanism of mRNA transport in the nucleus
-
Vargas DY, Raj A, Marras SA, Kramer FR, Tyagi S (2005) Mechanism of mRNA transport in the nucleus. Proc Natl Acad Sci U S A 102: 17008-17013.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 17008-17013
-
-
Vargas, D.Y.1
Raj, A.2
Marras, S.A.3
Kramer, F.R.4
Tyagi, S.5
-
26
-
-
12144289862
-
From silencing to gene expression: Real-time analysis in single cells
-
Janicki SM, Tsukamoto T, Salghetti SE, Tansey WP, Sachidanandam R, et al. (2004) From silencing to gene expression: Real-time analysis in single cells. Cell 116: 683-698.
-
(2004)
Cell
, vol.116
, pp. 683-698
-
-
Janicki, S.M.1
Tsukamoto, T.2
Salghetti, S.E.3
Tansey, W.P.4
Sachidanandam, R.5
-
27
-
-
0026720075
-
Tight control of gene expression in mammalian cells by tetracycline-responsive promoters
-
Gossen M, Bujard H (1992) Tight control of gene expression in mammalian cells by tetracycline-responsive promoters. Proc Natl Acad Sci U S A 89: 5547-5551.
-
(1992)
Proc Natl Acad Sci U S A
, vol.89
, pp. 5547-5551
-
-
Gossen, M.1
Bujard, H.2
-
29
-
-
0000111447
-
Markovian modeling of gene-product synthesis
-
Peccoud J, Ycart B (1995) Markovian modeling of gene-product synthesis. Theor Population Biol 48: 222-234.
-
(1995)
Theor Population Biol
, vol.48
, pp. 222-234
-
-
Peccoud, J.1
Ycart, B.2
-
30
-
-
33645429016
-
Exact stochastic simulation of coupled chemical reactions
-
Gillespie DT (1977) Exact stochastic simulation of coupled chemical reactions. J Phys Chem 81: 2340-2361.
-
(1977)
J Phys Chem
, vol.81
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
31
-
-
0842285841
-
Summing up the noise in gene networks
-
Paulsson J (2004) Summing up the noise in gene networks. Nature 427: 415-418.
-
(2004)
Nature
, vol.427
, pp. 415-418
-
-
Paulsson, J.1
-
32
-
-
15544388848
-
Noise propagation in gene networks
-
Pedraza JM, van Oudenaarden A (2005) Noise propagation in gene networks. Science 307: 1965-1969.
-
(2005)
Science
, vol.307
, pp. 1965-1969
-
-
Pedraza, J.M.1
Van Oudenaarden, A.2
-
33
-
-
0035193294
-
Stochasticity in transcriptional regulation: Origins, consequences, and mathematical representations
-
Kepler TB, Elston TC (2001) Stochasticity in transcriptional regulation: Origins, consequences, and mathematical representations. Biophys J 81: 3116-3136.
-
(2001)
Biophys J
, vol.81
, pp. 3116-3136
-
-
Kepler, T.B.1
Elston, T.C.2
-
34
-
-
0033612538
-
Large-scale chromatin unfolding and remodeling induced by VP16 acidic activation domain
-
Tumbar T, Sudlow G, Belmont AS (1999) Large-scale chromatin unfolding and remodeling induced by VP16 acidic activation domain. J Cell Biol 145: 1341-1354.
-
(1999)
J Cell Biol
, vol.145
, pp. 1341-1354
-
-
Tumbar, T.1
Sudlow, G.2
Belmont, A.S.3
-
35
-
-
0037314175
-
Sequential recruitment of HAT and SWI/ SNF components to condensed chromatin by VP16
-
Memedula S, Belmont AS (2003) Sequential recruitment of HAT and SWI/ SNF components to condensed chromatin by VP16. Curr Biol 13: 241-246.
-
(2003)
Curr Biol
, vol.13
, pp. 241-246
-
-
Memedula, S.1
Belmont, A.S.2
-
37
-
-
0034307684
-
Probability in transcriptional regulation and its implications for leukocyte differentiation and inducible gene expression
-
Hume DA (2000) Probability in transcriptional regulation and its implications for leukocyte differentiation and inducible gene expression. Blood 96: 2323-2328.
-
(2000)
Blood
, vol.96
, pp. 2323-2328
-
-
Hume, D.A.1
-
38
-
-
4644343922
-
Bacterial persistence as a phenotypic switch
-
Balaban NQ, Merrin J, Chait R, Kowalik L, Leibler S (2004) Bacterial persistence as a phenotypic switch. Science 305: 1622-1625.
-
(2004)
Science
, vol.305
, pp. 1622-1625
-
-
Balaban, N.Q.1
Merrin, J.2
Chait, R.3
Kowalik, L.4
Leibler, S.5
-
39
-
-
33644856456
-
Stochastic spineless expression creates the retinal mosaic for colour vision
-
Wernet MF, Mazzoni EO, Celik A, Duncan DM, Duncan I, et al. (2006) Stochastic spineless expression creates the retinal mosaic for colour vision. Nature 440: 174-180.
-
(2006)
Nature
, vol.440
, pp. 174-180
-
-
Wernet, M.F.1
Mazzoni, E.O.2
Celik, A.3
Duncan, D.M.4
Duncan, I.5
-
40
-
-
0030461543
-
In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition
-
Robinett CC, Straight A, Li G, Willhelm C, Sudlow G, et al. (1996) In vivo localization of DNA sequences and visualization of large-scale chromatin organization using lac operator/repressor recognition. J Cell Biol 135: 1685-1700.
-
(1996)
J Cell Biol
, vol.135
, pp. 1685-1700
-
-
Robinett, C.C.1
Straight, A.2
Li, G.3
Willhelm, C.4
Sudlow, G.5
|