메뉴 건너뛰기




Volumn 41, Issue 5, 2013, Pages 3257-3273

Development of bis-locked nucleic acid (bisLNA) oligonucleotides for efficient invasion of supercoiled duplex DNA

Author keywords

[No Author keywords available]

Indexed keywords

BIS LOCKED NUCLEIC ACID; DOUBLE STRANDED DNA; ION; LOCKED NUCLEIC ACID; OLIGONUCLEOTIDE; PLASMID DNA; SUPERCOILED DUPLEX DNA; UNCLASSIFIED DRUG;

EID: 84876401355     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkt007     Document Type: Article
Times cited : (25)

References (80)
  • 1
    • 77949512140 scopus 로고    scopus 로고
    • RNA targeting therapeutics: Molecular mechanisms of antisense oligonucleotides as a therapeutic platform
    • Bennett, C.F. and Swayze, E.E. (2010) RNA targeting therapeutics: molecular mechanisms of antisense oligonucleotides as a therapeutic platform. Annu. Rev. Pharmacol. Toxicol., 50, 259-293.
    • (2010) Annu. Rev. Pharmacol. Toxicol. , vol.50 , pp. 259-293
    • Bennett, C.F.1    Swayze, E.E.2
  • 2
    • 0023619361 scopus 로고
    • Sequence-specific cleavage of double helical DNA by triple helix formation
    • Moser, H.E. and Dervan, P.B. (1987) Sequence-specific cleavage of double helical DNA by triple helix formation. Science, 238, 645-650.
    • (1987) Science , vol.238 , pp. 645-650
    • Moser, H.E.1    Dervan, P.B.2
  • 3
    • 0023652076 scopus 로고
    • Sequence-specific recognition, photocrosslinking and cleavage of the DNA double helix by an oligo-[alpha]-thymidylate covalently linked to an azidoproflavine derivative
    • Le Doan, T., Perrouault, L., Praseuth, D., Habhoub, N., Decout, J.L., Thuong, N.T., Lhomme, J. and Helene, C. (1987) Sequence-specific recognition, photocrosslinking and cleavage of the DNA double helix by an oligo-[alpha]-thymidylate covalently linked to an azidoproflavine derivative. Nucleic Acids Res., 15, 7749-7760.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 7749-7760
    • Le Doan, T.1    Perrouault, L.2    Praseuth, D.3    Habhoub, N.4    Decout, J.L.5    Thuong, N.T.6    Lhomme, J.7    Helene, C.8
  • 5
    • 0028998491 scopus 로고
    • Inhibition of in vitro transcription by a triplex-forming oligonucleotide targeted to human c-myc P2 promoter
    • Kim, H.G. and Miller, D.M. (1995) Inhibition of in vitro transcription by a triplex-forming oligonucleotide targeted to human c-myc P2 promoter. Biochemistry, 34, 8165-8171.
    • (1995) Biochemistry , vol.34 , pp. 8165-8171
    • Kim, H.G.1    Miller, D.M.2
  • 6
    • 0037096781 scopus 로고    scopus 로고
    • Design of a novel triple helix-forming oligodeoxyribonucleotide directed to the major promoter of the c-myc gene
    • McGuffie, E.M. and Catapano, C.V. (2002) Design of a novel triple helix-forming oligodeoxyribonucleotide directed to the major promoter of the c-myc gene. Nucleic Acids Res., 30, 2701-2709.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 2701-2709
    • McGuffie, E.M.1    Catapano, C.V.2
  • 7
    • 0033547754 scopus 로고    scopus 로고
    • Inhibition of transcription elongation in the HER-2/neu coding sequence by triplex-directed covalent modification of the template strand
    • Ebbinghaus, S.W., Fortinberry, H. and Gamper, H.B. Jr (1999) Inhibition of transcription elongation in the HER-2/neu coding sequence by triplex-directed covalent modification of the template strand. Biochemistry, 38, 619-628.
    • (1999) Biochemistry , vol.38 , pp. 619-628
    • Ebbinghaus, S.W.1    Fortinberry, H.2    Gamper Jr., H.B.3
  • 10
    • 0033977775 scopus 로고    scopus 로고
    • Activation of human gamma-globin gene expression via triplex-forming oligonucleotide (TFO)-directed mutations in the gamma-globin gene 50 flanking region
    • Xu, X.S., Glazer, P.M. and Wang, G. (2000) Activation of human gamma-globin gene expression via triplex-forming oligonucleotide (TFO)-directed mutations in the gamma-globin gene 50 flanking region. Gene, 242, 219-228.
    • (2000) Gene , vol.242 , pp. 219-228
    • Xu, X.S.1    Glazer, P.M.2    Wang, G.3
  • 11
    • 0028859271 scopus 로고
    • Targeted mutagenesis in mammalian cells mediated by intracellular triple helix formation
    • Wang, G., Levy, D.D., Seidman, M.M. and Glazer, P.M. (1995) Targeted mutagenesis in mammalian cells mediated by intracellular triple helix formation. Mol. Cell. Biol., 15, 1759-1768.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 1759-1768
    • Wang, G.1    Levy, D.D.2    Seidman, M.M.3    Glazer, P.M.4
  • 12
    • 20444472024 scopus 로고    scopus 로고
    • Triplex-induced recombination and repair in the pyrimidine motif
    • Kalish, J.M., Seidman, M.M., Weeks, D.L. and Glazer, P.M. (2005) Triplex-induced recombination and repair in the pyrimidine motif. Nucleic Acids Res., 33, 3492-3502.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 3492-3502
    • Kalish, J.M.1    Seidman, M.M.2    Weeks, D.L.3    Glazer, P.M.4
  • 14
    • 0242317685 scopus 로고    scopus 로고
    • Effect of DNA target sequence on triplex formation by oligo-20-deoxy-and 20-O-methylribonucleotides
    • Cassidy, R.A., Puri, N. and Miller, P.S. (2003) Effect of DNA target sequence on triplex formation by oligo-20-deoxy-and 20-O-methylribonucleotides. Nucleic Acids Res., 31, 4099-4108.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 4099-4108
    • Cassidy, R.A.1    Puri, N.2    Miller, P.S.3
  • 15
    • 78649822317 scopus 로고    scopus 로고
    • Gene targeting and expression modulation by peptide nucleic acids (PNA)
    • Nielsen, P.E. (2010) Gene targeting and expression modulation by peptide nucleic acids (PNA). Curr. Pharm. Des., 16, 3118-3123.
    • (2010) Curr. Pharm. Des. , vol.16 , pp. 3118-3123
    • Nielsen, P.E.1
  • 16
    • 1842531403 scopus 로고    scopus 로고
    • Sequence and pH effects of LNA-containing triple helix-forming oligonucleotides: Physical chemistry, biochemistry, and modeling studies
    • Sun, B.W., Babu, B.R., Sorensen, M.D., Zakrzewska, K., Wengel, J. and Sun, J.S. (2004) Sequence and pH effects of LNA-containing triple helix-forming oligonucleotides: physical chemistry, biochemistry, and modeling studies. Biochemistry, 43, 4160-4169.
    • (2004) Biochemistry , vol.43 , pp. 4160-4169
    • Sun, B.W.1    Babu, B.R.2    Sorensen, M.D.3    Zakrzewska, K.4    Wengel, J.5    Sun, J.S.6
  • 17
    • 21244489606 scopus 로고    scopus 로고
    • Exploring cellular activity of locked nucleic acid-modified triplex-forming oligonucleotides and defining its molecular basis
    • Brunet, E., Alberti, P., Perrouault, L., Babu, R., Wengel, J. and Giovannangeli, C. (2005) Exploring cellular activity of locked nucleic acid-modified triplex-forming oligonucleotides and defining its molecular basis. J. Biol. Chem., 280, 20076-20085.
    • (2005) J. Biol. Chem. , vol.280 , pp. 20076-20085
    • Brunet, E.1    Alberti, P.2    Perrouault, L.3    Babu, R.4    Wengel, J.5    Giovannangeli, C.6
  • 18
    • 33750024841 scopus 로고    scopus 로고
    • Targeting chromosomal sites with locked nucleic acid-modified triplex-forming oligonucleotides: Study of efficiency dependence on DNA nuclear environment
    • Brunet, E., Corgnali, M., Cannata, F., Perrouault, L. and Giovannangeli, C. (2006) Targeting chromosomal sites with locked nucleic acid-modified triplex-forming oligonucleotides: study of efficiency dependence on DNA nuclear environment. Nucleic Acids Res., 34, 4546-4553.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 4546-4553
    • Brunet, E.1    Corgnali, M.2    Cannata, F.3    Perrouault, L.4    Giovannangeli, C.5
  • 19
  • 21
    • 1242320280 scopus 로고    scopus 로고
    • Triplex-forming oligonucleotide target sequences in the human genome
    • Goni, J.R., de la Cruz, X. and Orozco, M. (2004) Triplex-forming oligonucleotide target sequences in the human genome. Nucleic Acids Res., 32, 354-360.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 354-360
    • Goni, J.R.1    De La Cruz, X.2    Orozco, M.3
  • 22
    • 33645787290 scopus 로고    scopus 로고
    • Exploring the reasons for the large density of triplex-forming oligonucleotide target sequences in the human regulatory regions
    • Goni, J.R., Vaquerizas, J.M., Dopazo, J. and Orozco, M. (2006) Exploring the reasons for the large density of triplex-forming oligonucleotide target sequences in the human regulatory regions. BMC Genomics, 7, 63.
    • (2006) BMC Genomics , vol.7 , pp. 63
    • Goni, J.R.1    Vaquerizas, J.M.2    Dopazo, J.3    Orozco, M.4
  • 23
    • 0028931130 scopus 로고
    • An overabundance of long oligopurine tracts occurs in the genome of simple and complex eukaryotes
    • Behe, M.J. (1995) An overabundance of long oligopurine tracts occurs in the genome of simple and complex eukaryotes. Nucleic Acids Res., 23, 689-695.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 689-695
    • Behe, M.J.1
  • 25
    • 0023780437 scopus 로고
    • Single strands, triple strands, and kinks in H-DNA
    • Htun, H. and Dahlberg, J.E. (1988) Single strands, triple strands, and kinks in H-DNA. Science, 241, 1791-1796.
    • (1988) Science , vol.241 , pp. 1791-1796
    • Htun, H.1    Dahlberg, J.E.2
  • 26
    • 0030006487 scopus 로고    scopus 로고
    • Invasion of the CAG triplet repeats by a complementary peptide nucleic acid inhibits transcription of the androgen receptor and TATA-binding protein genes and correlates with refolding of an active nucleosome containing a unique AR gene sequence
    • Boffa, L.C., Morris, P.L., Carpaneto, E.M., Louissaint, M. and Allfrey, V.G. (1996) Invasion of the CAG triplet repeats by a complementary peptide nucleic acid inhibits transcription of the androgen receptor and TATA-binding protein genes and correlates with refolding of an active nucleosome containing a unique AR gene sequence. J. Biol. Chem., 271, 13228-13233.
    • (1996) J. Biol. Chem. , vol.271 , pp. 13228-13233
    • Boffa, L.C.1    Morris, P.L.2    Carpaneto, E.M.3    Louissaint, M.4    Allfrey, V.G.5
  • 27
    • 34250793309 scopus 로고    scopus 로고
    • Inhibiting gene expression with peptide nucleic acid (PNA)-peptide conjugates that target chromosomal DNA
    • Hu, J. and Corey, D.R. (2007) Inhibiting gene expression with peptide nucleic acid (PNA)-peptide conjugates that target chromosomal DNA. Biochemistry, 46, 7581-7589.
    • (2007) Biochemistry , vol.46 , pp. 7581-7589
    • Hu, J.1    Corey, D.R.2
  • 28
    • 57649131046 scopus 로고    scopus 로고
    • Recognition of chromosomal DNA inside cells by locked nucleic acids
    • Beane, R., Gabillet, S., Montaillier, C., Arar, K. and Corey, D.R. (2008) Recognition of chromosomal DNA inside cells by locked nucleic acids. Biochemistry, 47, 13147-13149.
    • (2008) Biochemistry , vol.47 , pp. 13147-13149
    • Beane, R.1    Gabillet, S.2    Montaillier, C.3    Arar, K.4    Corey, D.R.5
  • 29
    • 0345445891 scopus 로고    scopus 로고
    • Combined triplex/ duplex invasion of double-stranded DNA by ''tail-clamp'' peptide nucleic acid
    • Bentin, T., Larsen, H.J. and Nielsen, P.E. (2003) Combined triplex/ duplex invasion of double-stranded DNA by ''tail-clamp'' peptide nucleic acid. Biochemistry, 42, 13987-13995.
    • (2003) Biochemistry , vol.42 , pp. 13987-13995
    • Bentin, T.1    Larsen, H.J.2    Nielsen, P.E.3
  • 31
    • 0034744290 scopus 로고    scopus 로고
    • 20-O, 40-C-Methylene bridged nucleic acid (20, 40-BNA): Synthesis and triplex-forming properties
    • Obika, S., Uneda, T., Sugimoto, T., Nanbu, D., Minami, T., Doi, T. and Imanishi, T. (2001) 20-O, 40-C-Methylene bridged nucleic acid (20, 40-BNA): synthesis and triplex-forming properties. Bioorg. Med. Chem., 9, 1001-1011.
    • (2001) Bioorg. Med. Chem. , vol.9 , pp. 1001-1011
    • Obika, S.1    Uneda, T.2    Sugimoto, T.3    Nanbu, D.4    Minami, T.5    Doi, T.6    Imanishi, T.7
  • 32
    • 21244489606 scopus 로고    scopus 로고
    • Exploring cellular activity of locked nucleic acid-modified triplex-forming oligonucleotides and defining its molecular basis
    • Brunet, E., Alberti, P., Perrouault, L., Babu, R., Wengel, J. and Giovannangeli, C. (2005) Exploring cellular activity of locked nucleic acid-modified triplex-forming oligonucleotides and defining its molecular basis. J. Biol. Chem., 280, 20076-20085.
    • (2005) J. Biol. Chem. , vol.280 , pp. 20076-20085
    • Brunet, E.1    Alberti, P.2    Perrouault, L.3    Babu, R.4    Wengel, J.5    Giovannangeli, C.6
  • 33
    • 0035951767 scopus 로고    scopus 로고
    • 20-O, 40-C-methylene bridged nucleic acid modification promotes pyrimidine motif triplex DNA formation at physiological pH: Thermodynamic and kinetic studies
    • Torigoe, H., Hari, Y., Sekiguchi, M., Obika, S. and Imanishi, T. (2001) 20-O, 40-C-methylene bridged nucleic acid modification promotes pyrimidine motif triplex DNA formation at physiological pH: thermodynamic and kinetic studies. J. Biol. Chem., 276, 2354-2360.
    • (2001) J. Biol. Chem. , vol.276 , pp. 2354-2360
    • Torigoe, H.1    Hari, Y.2    Sekiguchi, M.3    Obika, S.4    Imanishi, T.5
  • 34
    • 0025369611 scopus 로고
    • Spectroscopic and calorimetric investigation on the DNA triplex formed by d(C TCTTCTTTCTTTTCTTTCTTCTC) and d(GAGAAGAAAGA) at acidic pH
    • Xodo, L.E., Manzini, G. and Quadrifoglio, F. (1990) Spectroscopic and calorimetric investigation on the DNA triplex formed by d(C TCTTCTTTCTTTTCTTTCTTCTC) and d(GAGAAGAAAGA) at acidic pH. Nucleic Acids Res., 18, 3557-3564.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 3557-3564
    • Xodo, L.E.1    Manzini, G.2    Quadrifoglio, F.3
  • 35
    • 0025942240 scopus 로고
    • Sequence specificity in triple-helix formation: Experimental and theoretical studies of the effect of mismatches on triplex stability
    • Mergny, J.L., Sun, J.S., Rougee, M., Montenay-Garestier, T., Barcelo, F., Chomilier, J. and Helene, C. (1991) Sequence specificity in triple-helix formation: experimental and theoretical studies of the effect of mismatches on triplex stability. Biochemistry, 30, 9791-9798.
    • (1991) Biochemistry , vol.30 , pp. 9791-9798
    • Mergny, J.L.1    Sun, J.S.2    Rougee, M.3    Montenay-Garestier, T.4    Barcelo, F.5    Chomilier, J.6    Helene, C.7
  • 36
    • 0028091661 scopus 로고
    • Single-strand-targeted triplex formation: Stability, specificity and RNase H activation properties
    • Kandimalla, E.R. and Agrawal, S. (1994) Single-strand-targeted triplex formation: stability, specificity and RNase H activation properties. Gene, 149, 115-121.
    • (1994) Gene , vol.149 , pp. 115-121
    • Kandimalla, E.R.1    Agrawal, S.2
  • 37
    • 0028928953 scopus 로고
    • Efficient pH-independent sequence-specific DNA binding by pseudoisocytosine-containing bis-PNA
    • Egholm, M., Christensen, L., Dueholm, K.L., Buchardt, O., Coull, J. and Nielsen, P.E. (1995) Efficient pH-independent sequence-specific DNA binding by pseudoisocytosine-containing bis-PNA. Nucleic Acids Res., 23, 217-222.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 217-222
    • Egholm, M.1    Christensen, L.2    Dueholm, K.L.3    Buchardt, O.4    Coull, J.5    Nielsen, P.E.6
  • 38
    • 33745928141 scopus 로고    scopus 로고
    • Biological activity and biotechnological aspects of peptide nucleic acid
    • Lundin, K.E., Good, L., Stromberg, R., Graslund, A. and Smith, C.I. (2006) Biological activity and biotechnological aspects of peptide nucleic acid. Adv. Genet., 56, 1-51.
    • (2006) Adv. Genet. , vol.56 , pp. 1-51
    • Lundin, K.E.1    Good, L.2    Stromberg, R.3    Graslund, A.4    Smith, C.I.5
  • 40
    • 0033548529 scopus 로고    scopus 로고
    • An experimental study of mechanism and specificity of peptide nucleic acid (PNA) binding to duplex DNA
    • Kuhn, H., Demidov, V.V., Nielsen, P.E. and Frank-Kamenetskii, M.D. (1999) An experimental study of mechanism and specificity of peptide nucleic acid (PNA) binding to duplex DNA. J. Mol. Biol., 286, 1337-1345.
    • (1999) J. Mol. Biol. , vol.286 , pp. 1337-1345
    • Kuhn, H.1    Demidov, V.V.2    Nielsen, P.E.3    Frank-Kamenetskii, M.D.4
  • 41
    • 0345014787 scopus 로고    scopus 로고
    • Extending recognition by peptide nucleic acids (PNAs): Binding to duplex DNA and inhibition of transcription by tail-clamp PNA-peptide conjugates
    • Kaihatsu, K., Shah, R.H., Zhao, X. and Corey, D.R. (2003) Extending recognition by peptide nucleic acids (PNAs): binding to duplex DNA and inhibition of transcription by tail-clamp PNA-peptide conjugates. Biochemistry, 42, 13996-14003.
    • (2003) Biochemistry , vol.42 , pp. 13996-14003
    • Kaihatsu, K.1    Shah, R.H.2    Zhao, X.3    Corey, D.R.4
  • 42
    • 33845679853 scopus 로고    scopus 로고
    • Structural diversity of target-specific homopyrimidine peptide nucleic acid-dsDNA complexes
    • Bentin, T., Hansen, G.I. and Nielsen, P.E. (2006) Structural diversity of target-specific homopyrimidine peptide nucleic acid-dsDNA complexes. Nucleic Acids Res., 34, 5790-5799.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 5790-5799
    • Bentin, T.1    Hansen, G.I.2    Nielsen, P.E.3
  • 43
    • 0344874534 scopus 로고    scopus 로고
    • Use of locked nucleic acid oligonucleotides to add functionality to plasmid DNA
    • Hertoghs, K.M., Ellis, J.H. and Catchpole, I.R. (2003) Use of locked nucleic acid oligonucleotides to add functionality to plasmid DNA. Nucleic Acids Res., 31, 5817-5830.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5817-5830
    • Hertoghs, K.M.1    Ellis, J.H.2    Catchpole, I.R.3
  • 44
    • 2042542807 scopus 로고    scopus 로고
    • Cooperative strand invasion of supercoiled plasmid DNA by mixed linear PNA and PNA-peptide chimeras
    • Lundin, K.E., Ge, R., Svahn, M.G., Tornquist, E., Leijon, M., Branden, L.J. and Smith, C.I. (2004) Cooperative strand invasion of supercoiled plasmid DNA by mixed linear PNA and PNA-peptide chimeras. Biomol. Eng., 21, 51-59.
    • (2004) Biomol. Eng. , vol.21 , pp. 51-59
    • Lundin, K.E.1    Ge, R.2    Svahn, M.G.3    Tornquist, E.4    Leijon, M.5    Branden, L.J.6    Smith, C.I.7
  • 46
    • 11944257696 scopus 로고
    • Structural effects in the recognition of DNA by circular oligonucleotides
    • Prakash, G. and Kool, E.T. (1992) Structural effects in the recognition of DNA by circular oligonucleotides. J. Am. Chem. Soc., 114, 3523-3527.
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 3523-3527
    • Prakash, G.1    Kool, E.T.2
  • 47
    • 11944266948 scopus 로고
    • Structural optimization of non-nucleotide loop replacements for duplex and triplex DNAs
    • Rumney, S. and Kool, E.T. (1995) Structural optimization of non-nucleotide loop replacements for duplex and triplex DNAs. J. Am. Chem. Soc., 117, 5635-5646.
    • (1995) J. Am. Chem. Soc. , vol.117 , pp. 5635-5646
    • Rumney, S.1    Kool, E.T.2
  • 48
    • 0023057178 scopus 로고
    • Phosphorothioate-modified oligodeoxyribonucleotides III. NMR and UV spectroscopic studies of the Rp-Rp, Sp-Sp, and Rp-Sp duplexes, [d(GGSAATTCC)]2, derived from diastereomeric O-ethyl phosphorothioates
    • LaPlanche, L.A., James, T.L., Powell, C., Wilson, W.D., Uznanski, B., Stec, W.J., Summers, M.F. and Zon, G. (1986) Phosphorothioate-modified oligodeoxyribonucleotides. III. NMR and UV spectroscopic studies of the Rp-Rp, Sp-Sp, and Rp-Sp duplexes, [d(GGSAATTCC)]2, derived from diastereomeric O-ethyl phosphorothioates. Nucleic Acids Res., 14, 9081-9093.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 9081-9093
    • Laplanche, L.A.1    James, T.L.2    Powell, C.3    Wilson, W.D.4    Uznanski, B.5    Stec, W.J.6    Summers, M.F.7    Zon, G.8
  • 49
    • 0028227632 scopus 로고
    • Phosphorothioate oligonucleotide-directed triple helix formation
    • Hacia, J.G., Wold, B.J. and Dervan, P.B. (1994) Phosphorothioate oligonucleotide-directed triple helix formation. Biochemistry, 33, 5367-5369.
    • (1994) Biochemistry , vol.33 , pp. 5367-5369
    • Hacia, J.G.1    Wold, B.J.2    Dervan, P.B.3
  • 50
    • 27944467877 scopus 로고    scopus 로고
    • Increased stability and specificity through combined hybridization of peptide nucleic acid (PNA) and locked nucleic acid (LNA) to supercoiled plasmids for PNA-anchored ''Bioplex'' formation
    • Lundin, K.E., Hasan, M., Moreno, P.M., Tornquist, E., Oprea, I., Svahn, M.G., Simonson, E.O. and Smith, C.I. (2005) Increased stability and specificity through combined hybridization of peptide nucleic acid (PNA) and locked nucleic acid (LNA) to supercoiled plasmids for PNA-anchored ''Bioplex'' formation. Biomol. Eng., 22, 185-192.
    • (2005) Biomol. Eng. , vol.22 , pp. 185-192
    • Lundin, K.E.1    Hasan, M.2    Moreno, P.M.3    Tornquist, E.4    Oprea, I.5    Svahn, M.G.6    Simonson, E.O.7    Smith, C.I.8
  • 51
    • 33748054317 scopus 로고    scopus 로고
    • Efficient and persistent splice switching by systemically delivered LNA oligonucleotides in mice
    • Roberts, J., Palma, E., Sazani, P., Orum, H., Cho, M. and Kole, R. (2006) Efficient and persistent splice switching by systemically delivered LNA oligonucleotides in mice. Mol. Ther., 14, 471-475.
    • (2006) Mol. Ther. , vol.14 , pp. 471-475
    • Roberts, J.1    Palma, E.2    Sazani, P.3    Orum, H.4    Cho, M.5    Kole, R.6
  • 52
    • 79953767743 scopus 로고    scopus 로고
    • Down-modulation of cancer targets using locked nucleic acid (LNA)-based antisense oligonucleotides without transfection
    • Zhang, Y., Qu, Z., Kim, S., Shi, V., Liao, B., Kraft, P., Bandaru, R., Wu, Y., Greenberger, L.M. and Horak, I.D. (2011) Down-modulation of cancer targets using locked nucleic acid (LNA)-based antisense oligonucleotides without transfection. Gene Ther., 18, 326-333.
    • (2011) Gene Ther. , vol.18 , pp. 326-333
    • Zhang, Y.1    Qu, Z.2    Kim, S.3    Shi, V.4    Liao, B.5    Kraft, P.6    Bandaru, R.7    Wu, Y.8    Greenberger, L.M.9    Horak, I.D.10
  • 56
    • 37849040469 scopus 로고    scopus 로고
    • Strand invasion of mixed-sequence B-DNA by acridine-linked, gamma-peptide nucleic acid (gamma-PNA)
    • Rapireddy, S., He, G., Roy, S., Armitage, B.A. and Ly, D.H. (2007) Strand invasion of mixed-sequence B-DNA by acridine-linked, gamma-peptide nucleic acid (gamma-PNA). J. Am. Chem. Soc., 129, 15596-15600.
    • (2007) J. Am. Chem. Soc. , vol.129 , pp. 15596-15600
    • Rapireddy, S.1    He, G.2    Roy, S.3    Armitage, B.A.4    Ly, D.H.5
  • 57
    • 54349087593 scopus 로고    scopus 로고
    • A simple cytosine to G-clamp nucleobase substitution enables chiral gamma-PNAs to invade mixed-sequence double-helical B-form DNA
    • Chenna, V., Rapireddy, S., Sahu, B., Ausin, C., Pedroso, E. and Ly, D.H. (2008) A simple cytosine to G-clamp nucleobase substitution enables chiral gamma-PNAs to invade mixed-sequence double-helical B-form DNA. ChemBioChem, 9, 2388-2391.
    • (2008) ChemBioChem , vol.9 , pp. 2388-2391
    • Chenna, V.1    Rapireddy, S.2    Sahu, B.3    Ausin, C.4    Pedroso, E.5    Ly, D.H.6
  • 58
    • 33746841845 scopus 로고    scopus 로고
    • Structure of the biologically relevant G-quadruplex in the c-MYC promoter
    • Yang, D. and Hurley, L.H. (2006) Structure of the biologically relevant G-quadruplex in the c-MYC promoter. Nucleosides Nucleotides Nucleic Acids, 25, 951-968.
    • (2006) Nucleosides Nucleotides Nucleic Acids , vol.25 , pp. 951-968
    • Yang, D.1    Hurley, L.H.2
  • 60
    • 4544288618 scopus 로고    scopus 로고
    • Naturally occurring H-DNA-forming sequences are mutagenic in mammalian cells
    • Wang, G. and Vasquez, K.M. (2004) Naturally occurring H-DNA-forming sequences are mutagenic in mammalian cells. Proc. Natl. Acad. Sci. USA, 101, 13448-13453.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 13448-13453
    • Wang, G.1    Vasquez, K.M.2
  • 61
    • 0020491921 scopus 로고
    • Chloroacetaldehyde-treated ribo- and deoxyribopolynucleotides. 1. Reaction products
    • Kusmierek, J.T. and Singer, B. (1982) Chloroacetaldehyde-treated ribo- and deoxyribopolynucleotides. 1. Reaction products. Biochemistry, 21, 5717-5722.
    • (1982) Biochemistry , vol.21 , pp. 5717-5722
    • Kusmierek, J.T.1    Singer, B.2
  • 62
    • 0026802570 scopus 로고
    • Detection of non-BDNA structures at specific sites in supercoiled plasmid DNA and chromatin with haloacetaldehyde and diethyl pyrocarbonate
    • Kohwi-Shigematsu, T. and Kohwi, Y. (1992) Detection of non-BDNA structures at specific sites in supercoiled plasmid DNA and chromatin with haloacetaldehyde and diethyl pyrocarbonate. Methods Enzymol., 212, 155-180.
    • (1992) Methods Enzymol. , vol.212 , pp. 155-180
    • Kohwi-Shigematsu, T.1    Kohwi, Y.2
  • 63
    • 0023256126 scopus 로고
    • A single mode of DNA base-pair opening drives imino proton exchange
    • Gueron, M., Kochoyan, M. and Leroy, J.L. (1987) A single mode of DNA base-pair opening drives imino proton exchange. Nature, 328, 89-92.
    • (1987) Nature , vol.328 , pp. 89-92
    • Gueron, M.1    Kochoyan, M.2    Leroy, J.L.3
  • 64
    • 32644444430 scopus 로고    scopus 로고
    • Sequence-dependent base pair opening in DNA double helix
    • Krueger, A., Protozanova, E. and Frank-Kamenetskii, M.D. (2006) Sequence-dependent base pair opening in DNA double helix. Biophys. J., 90, 3091-3099.
    • (2006) Biophys. J. , vol.90 , pp. 3091-3099
    • Krueger, A.1    Protozanova, E.2    Frank-Kamenetskii, M.D.3
  • 65
    • 0023433855 scopus 로고
    • Supercoiling of the DNA template during transcription
    • Liu, L.F. and Wang, J.C. (1987) Supercoiling of the DNA template during transcription. Proc. Natl. Acad. Sci. USA, 84, 7024-7027.
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 7024-7027
    • Liu, L.F.1    Wang, J.C.2
  • 66
    • 84855897667 scopus 로고    scopus 로고
    • Quantitative model of R-loop forming structures reveals a novel level of RNA-DNA interactome complexity
    • Wongsurawat, T., Jenjaroenpun, P., Kwoh, C.K. and Kuznetsov, V. (2013) Quantitative model of R-loop forming structures reveals a novel level of RNA-DNA interactome complexity. Nucleic Acids Res., 40, e16.
    • (2013) Nucleic Acids Res. , vol.40
    • Wongsurawat, T.1    Jenjaroenpun, P.2    Kwoh, C.K.3    Kuznetsov, V.4
  • 67
    • 84860338675 scopus 로고    scopus 로고
    • R loops: From transcription byproducts to threats to genome stability
    • Aguilera, A. and Garcia-Muse, T. (2012) R loops: from transcription byproducts to threats to genome stability. Mol. Cell, 46, 115-124.
    • (2012) Mol. Cell , vol.46 , pp. 115-124
    • Aguilera, A.1    Garcia-Muse, T.2
  • 69
    • 0032713003 scopus 로고    scopus 로고
    • The solution structure of a locked nucleic acid (LNA) hybridized to DNA
    • Nielsen, C.B., Singh, S.K., Wengel, J. and Jacobsen, J.P. (1999) The solution structure of a locked nucleic acid (LNA) hybridized to DNA. J. Biomol. Struct. Dyn., 17, 175-191.
    • (1999) J. Biomol. Struct. Dyn. , vol.17 , pp. 175-191
    • Nielsen, C.B.1    Singh, S.K.2    Wengel, J.3    Jacobsen, J.P.4
  • 70
    • 0034023314 scopus 로고    scopus 로고
    • Solution structure of an LNA hybridized to DNA: NMR study of the d(CT(L) GCT (L)T(LCTLGCdGCAGAAGCAG duplex containing four locked nucleotides
    • Nielsen, K.E., Singh, S.K., Wengel, J. and Jacobsen, J.P. (2000) Solution structure of an LNA hybridized to DNA: NMR study of the d(CT(L)GCT(L)T(L)CT(L) GC):d(GCAGAAGCAG) duplex containing four locked nucleotides. Bioconjug. Chem., 11, 228-238.
    • (2000) Bioconjug Chem , vol.11 , pp. 228-238
    • Nielsen, K.E.1    Singh, S.K.2    Wengel, J.3    Jacobsen, J.P.4
  • 71
    • 2442695613 scopus 로고    scopus 로고
    • NMR studies of fully modified locked nucleic acid (LNA) hybrids: Solution structure of an LNA:RNA hybrid and characterization of an LNA:DNA hybrid
    • Nielsen, K.E., Rasmussen, J., Kumar, R., Wengel, J., Jacobsen, J.P. and Petersen, M. (2004) NMR studies of fully modified locked nucleic acid (LNA) hybrids: solution structure of an LNA:RNA hybrid and characterization of an LNA:DNA hybrid. Bioconjug. Chem., 15, 449-457.
    • (2004) Bioconjug. Chem. , vol.15 , pp. 449-457
    • Nielsen, K.E.1    Rasmussen, J.2    Kumar, R.3    Wengel, J.4    Jacobsen, J.P.5    Petersen, M.6
  • 72
    • 35148869236 scopus 로고    scopus 로고
    • The structure of LNA:DNA hybrids from molecular dynamics simulations: The effect of locked nucleotides
    • Ivanova, A. and Rosch, N. (2007) The structure of LNA:DNA hybrids from molecular dynamics simulations: the effect of locked nucleotides. J. Phys. Chem. A, 111, 9307-9319.
    • (2007) J. Phys. Chem. A , vol.111 , pp. 9307-9319
    • Ivanova, A.1    Rosch, N.2
  • 73
    • 33745012353 scopus 로고    scopus 로고
    • Thermodynamic, counterion, and hydration effects for the incorporation of locked nucleic acid nucleotides into DNA duplexes
    • Kaur, H., Arora, A., Wengel, J. and Maiti, S. (2006) Thermodynamic, counterion, and hydration effects for the incorporation of locked nucleic acid nucleotides into DNA duplexes. Biochemistry, 45, 7347-7355.
    • (2006) Biochemistry , vol.45 , pp. 7347-7355
    • Kaur, H.1    Arora, A.2    Wengel, J.3    Maiti, S.4
  • 74
    • 4243150790 scopus 로고    scopus 로고
    • Selectivity and affinity of triplex-forming oligonucleotides containing 20-aminoethoxy-5- (3-aminoprop-1-ynyl)uridine for recognizing at base pairs in duplex DNA
    • Osborne, S.D., Powers, V.E., Rusling, D.A., Lack, O., Fox, K.R. and Brown, T. (2004) Selectivity and affinity of triplex-forming oligonucleotides containing 20-aminoethoxy-5- (3-aminoprop-1-ynyl)uridine for recognizing AT base pairs in duplex DNA. Nucleic Acids Res., 32, 4439-4447.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 4439-4447
    • Osborne, S.D.1    Powers, V.E.2    Rusling, D.A.3    Lack, O.4    Fox, K.R.5    Brown, T.6
  • 76
    • 0028315891 scopus 로고
    • Base pairing and steric interactions between pyrimidine strand bridging loops and the purine strand in DNA pyrimidine.purine.pyrimidine triplexes
    • Booher, M.A., Wang, S. and Kool, E.T. (1994) Base pairing and steric interactions between pyrimidine strand bridging loops and the purine strand in DNA pyrimidine.purine.pyrimidine triplexes. Biochemistry, 33, 4645-4651.
    • (1994) Biochemistry , vol.33 , pp. 4645-4651
    • Booher, M.A.1    Wang, S.2    Kool, E.T.3
  • 77
    • 0024504005 scopus 로고
    • Triple helix formation of oligonucleotides on DNA extended to the physiological range
    • Povsic, T.J. and Dervan, P.B. (1989) Triple helix formation of oligonucleotides on DNA extended to the physiological range. J. Am. Chem. Soc., 11, 3059-3061.
    • (1989) J. Am. Chem. Soc. , vol.11 , pp. 3059-3061
    • Povsic, T.J.1    Dervan, P.B.2
  • 78
    • 34447101429 scopus 로고    scopus 로고
    • Inhibiting transcription of chromosomal DNA using antigene RNAs
    • Janowski, B.A. and Corey, D.R. (2005) Inhibiting transcription of chromosomal DNA using antigene RNAs. Nucleic Acids Symp. Ser. (Oxf), 49, 367-368.
    • (2005) Nucleic Acids Symp. Ser. (Oxf) , vol.49 , pp. 367-368
    • Janowski, B.A.1    Corey, D.R.2
  • 79
    • 34250886279 scopus 로고    scopus 로고
    • Inhibiting gene expression with locked nucleic acids (LNAs) that target chromosomal DNA
    • Beane, R.L., Ram, R., Gabillet, S., Arar, K., Monia, B.P. and Corey, D.R. (2007) Inhibiting gene expression with locked nucleic acids (LNAs) that target chromosomal DNA. Biochemistry, 46, 7572-7580.
    • (2007) Biochemistry , vol.46 , pp. 7572-7580
    • Beane, R.L.1    Ram, R.2    Gabillet, S.3    Arar, K.4    Monia, B.P.5    Corey, D.R.6
  • 80
    • 79957994004 scopus 로고    scopus 로고
    • Antisense and antigene inhibition of gene expression by cell-permeable oligonucleotide-oligospermine conjugates
    • Gagnon, K.T., Watts, J.K., Pendergraff, H.M., Montaillier, C., Thai, D., Potier, P. and Corey, D.R. (2011) Antisense and antigene inhibition of gene expression by cell-permeable oligonucleotide-oligospermine conjugates. J. Am. Chem. Soc., 133, 8404-8407.
    • (2011) J. Am. Chem. Soc. , vol.133 , pp. 8404-8407
    • Gagnon, K.T.1    Watts, J.K.2    Pendergraff, H.M.3    Montaillier, C.4    Thai, D.5    Potier, P.6    Corey, D.R.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.