-
1
-
-
0035941229
-
Eukaryotic DNA polymerases: Proposal for a revised nomenclature
-
Burgers, P. M., Koonin, E. V., Bruford, E., Blanco, L., Burtis, K. C., Christman, M. F., Copeland, W. C., Friedberg, E. C., Hanaoka, F., Hinkle, D. C., Lawrence, C. W., Nakanishi, M., Ohmori, H., Prakash, L., Prakash, S., Reynaud, C. A., Sugino, A., Todo, T., Wang, Z., Weill, J. C., and Woodgate, R. (2001) Eukaryotic DNA polymerases: Proposal for a revised nomenclature J. Biol. Chem. 276, 43487-43490
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 43487-43490
-
-
Burgers, P.M.1
Koonin, E.V.2
Bruford, E.3
Blanco, L.4
Burtis, K.C.5
Christman, M.F.6
Copeland, W.C.7
Friedberg, E.C.8
Hanaoka, F.9
Hinkle, D.C.10
Lawrence, C.W.11
Nakanishi, M.12
Ohmori, H.13
Prakash, L.14
Prakash, S.15
Reynaud, C.A.16
Sugino, A.17
Todo, T.18
Wang, Z.19
Weill, J.C.20
Woodgate, R.21
more..
-
2
-
-
79251481487
-
DNA polymerases and cancer
-
Lange, S. S., Takata, K., and Wood, R. D. (2011) DNA polymerases and cancer Nat. Rev. Cancer 11, 96-110
-
(2011)
Nat. Rev. Cancer
, vol.11
, pp. 96-110
-
-
Lange, S.S.1
Takata, K.2
Wood, R.D.3
-
3
-
-
73949096397
-
Structural determinant for switching between the polymerase and exonuclease modes in the PCNA-replicative DNA polymerase complex
-
Nishida, H., Mayanagi, K., Kiyonari, S., Sato, Y., Oyama, T., Ishino, Y., and Morikawa, K. (2009) Structural determinant for switching between the polymerase and exonuclease modes in the PCNA-replicative DNA polymerase complex Proc. Natl. Acad. Sci. U.S.A. 106, 20693-20698
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 20693-20698
-
-
Nishida, H.1
Mayanagi, K.2
Kiyonari, S.3
Sato, Y.4
Oyama, T.5
Ishino, Y.6
Morikawa, K.7
-
4
-
-
0041823551
-
Use of 2-aminopurine fluorescence to examine conformational changes during nucleotide incorporation by DNA polymerase i (Klenow fragment)
-
Purohit, V., Grindley, N. D., and Joyce, C. M. (2003) Use of 2-aminopurine fluorescence to examine conformational changes during nucleotide incorporation by DNA polymerase I (Klenow fragment) Biochemistry 42, 10200-10211
-
(2003)
Biochemistry
, vol.42
, pp. 10200-10211
-
-
Purohit, V.1
Grindley, N.D.2
Joyce, C.M.3
-
5
-
-
0037474275
-
Protein-protein interactions in the bacteriophage T4 replisome. The leading strand holoenzyme is physically linked to the lagging strand holoenzyme and the primosome
-
Ishmael, F. T., Trakselis, M. A., and Benkovic, S. J. (2003) Protein-protein interactions in the bacteriophage T4 replisome. The leading strand holoenzyme is physically linked to the lagging strand holoenzyme and the primosome J. Biol. Chem. 278, 3145-3152
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 3145-3152
-
-
Ishmael, F.T.1
Trakselis, M.A.2
Benkovic, S.J.3
-
6
-
-
0032509151
-
Transition between different binding modes in rat DNA polymerase β-ssDNA complexes
-
Jezewska, M. J., Rajendran, S., and Bujalowski, W. (1998) Transition between different binding modes in rat DNA polymerase β-ssDNA complexes J. Mol. Biol. 284, 1113-1131
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 1113-1131
-
-
Jezewska, M.J.1
Rajendran, S.2
Bujalowski, W.3
-
7
-
-
39449115715
-
Solution structures of 2:1 and 1:1 DNA polymerase-DNA complexes probed by ultracentrifugation and small-angle X-ray scattering
-
Tang, K. H., Niebuhr, M., Aulabaugh, A., and Tsai, M. D. (2008) Solution structures of 2:1 and 1:1 DNA polymerase-DNA complexes probed by ultracentrifugation and small-angle X-ray scattering Nucleic Acids Res. 36, 849-860
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 849-860
-
-
Tang, K.H.1
Niebuhr, M.2
Aulabaugh, A.3
Tsai, M.D.4
-
8
-
-
36049046743
-
Interactions of the DNA polymerase X from African swine fever virus with gapped DNA substrates. Quantitative analysis of functional structures of the formed complexes
-
Jezewska, M. J., Bujalowski, P. J., and Bujalowski, W. (2007) Interactions of the DNA polymerase X from African swine fever virus with gapped DNA substrates. Quantitative analysis of functional structures of the formed complexes Biochemistry 46, 12909-12924
-
(2007)
Biochemistry
, vol.46
, pp. 12909-12924
-
-
Jezewska, M.J.1
Bujalowski, P.J.2
Bujalowski, W.3
-
9
-
-
46049099805
-
Structure and function of 2:1 DNA polymerase.DNA complexes
-
Tang, K. H. and Tsai, M. D. (2008) Structure and function of 2:1 DNA polymerase.DNA complexes J. Cell. Physiol. 216, 315-320
-
(2008)
J. Cell. Physiol.
, vol.216
, pp. 315-320
-
-
Tang, K.H.1
Tsai, M.D.2
-
10
-
-
34547730912
-
Characterization of a triple DNA polymerase replisome
-
McInerney, P., Johnson, A., Katz, F., and O'Donnell, M. (2007) Characterization of a triple DNA polymerase replisome Mol. Cell 27, 527-538
-
(2007)
Mol. Cell
, vol.27
, pp. 527-538
-
-
McInerney, P.1
Johnson, A.2
Katz, F.3
O'Donnell, M.4
-
11
-
-
2942562192
-
The dynamic processivity of the T4 DNA polymerase during replication
-
Yang, J., Zhuang, Z., Roccasecca, R. M., Trakselis, M. A., and Benkovic, S. J. (2004) The dynamic processivity of the T4 DNA polymerase during replication Proc. Natl. Acad. Sci. U.S.A. 101, 8289-8294
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 8289-8294
-
-
Yang, J.1
Zhuang, Z.2
Roccasecca, R.M.3
Trakselis, M.A.4
Benkovic, S.J.5
-
12
-
-
79952746781
-
Simultaneous single-molecule measurements of phage T7 replisome composition and function reveal the mechanism of polymerase exchange
-
Loparo, J. J., Kulczyk, A. W., Richardson, C. C., and van Oijen, A. M. (2011) Simultaneous single-molecule measurements of phage T7 replisome composition and function reveal the mechanism of polymerase exchange Proc. Natl. Acad. Sci. U.S.A. 108, 3584-3589
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 3584-3589
-
-
Loparo, J.J.1
Kulczyk, A.W.2
Richardson, C.C.3
Van Oijen, A.M.4
-
13
-
-
0030868589
-
Comparison of archaeal and bacterial genomes: Computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea
-
Koonin, E. V., Mushegian, A. R., Galperin, M. Y., and Walker, D. R. (1997) Comparison of archaeal and bacterial genomes: Computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea Mol. Microbiol. 25, 619-637
-
(1997)
Mol. Microbiol.
, vol.25
, pp. 619-637
-
-
Koonin, E.V.1
Mushegian, A.R.2
Galperin, M.Y.3
Walker, D.R.4
-
15
-
-
65349186567
-
Evolution of DNA polymerases: An inactivated polymerase-exonuclease module in Pol μ and a chimeric origin of eukaryotic polymerases from two classes of archaeal ancestors
-
Tahirov, T. H., Makarova, K. S., Rogozin, I. B., Pavlov, Y. I., and Koonin, E. V. (2009) Evolution of DNA polymerases: An inactivated polymerase-exonuclease module in Pol μ and a chimeric origin of eukaryotic polymerases from two classes of archaeal ancestors Biol. Direct 4, 11
-
(2009)
Biol. Direct
, vol.4
, pp. 11
-
-
Tahirov, T.H.1
Makarova, K.S.2
Rogozin, I.B.3
Pavlov, Y.I.4
Koonin, E.V.5
-
16
-
-
7944222972
-
Insights into DNA replication: The crystal structure of DNA polymerase B1 from the archaeon Sulfolobus solfataricus
-
Savino, C., Federici, L., Johnson, K. A., Vallone, B., Nastopoulos, V., Rossi, M., Pisani, F. M., and Tsernoglou, D. (2004) Insights into DNA replication: The crystal structure of DNA polymerase B1 from the archaeon Sulfolobus solfataricus Structure 12, 2001-2008
-
(2004)
Structure
, vol.12
, pp. 2001-2008
-
-
Savino, C.1
Federici, L.2
Johnson, K.A.3
Vallone, B.4
Nastopoulos, V.5
Rossi, M.6
Pisani, F.M.7
Tsernoglou, D.8
-
17
-
-
0035890599
-
Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): An archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic pol
-
Boudsocq, F., Iwai, S., Hanaoka, F., and Woodgate, R. (2001) Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): An archaeal DinB-like DNA polymerase with lesion-bypass properties akin to eukaryotic pol Nucleic Acids Res. 29, 4607-4616
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 4607-4616
-
-
Boudsocq, F.1
Iwai, S.2
Hanaoka, F.3
Woodgate, R.4
-
18
-
-
0035812849
-
Crystal structure of a Y-family DNA polymerase in action: A mechanism for error-prone and lesion-bypass replication
-
Ling, H., Boudsocq, F., Woodgate, R., and Yang, W. (2001) Crystal structure of a Y-family DNA polymerase in action: A mechanism for error-prone and lesion-bypass replication Cell 107, 91-102
-
(2001)
Cell
, vol.107
, pp. 91-102
-
-
Ling, H.1
Boudsocq, F.2
Woodgate, R.3
Yang, W.4
-
19
-
-
0037205402
-
Low fidelity DNA synthesis by a Y-family DNA polymerase due to misalignment in the active site
-
Kokoska, R. J., Bebenek, K., Boudsocq, F., Woodgate, R., and Kunkel, T. A. (2002) Low fidelity DNA synthesis by a Y-family DNA polymerase due to misalignment in the active site J. Biol. Chem. 277, 19633-19638
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 19633-19638
-
-
Kokoska, R.J.1
Bebenek, K.2
Boudsocq, F.3
Woodgate, R.4
Kunkel, T.A.5
-
20
-
-
75349098593
-
A trimeric DNA polymerase complex increases the native replication processivity
-
Mikheikin, A. L., Lin, H. K., Mehta, P., Jen-Jacobson, L., and Trakselis, M. A. (2009) A trimeric DNA polymerase complex increases the native replication processivity Nucleic Acids Res. 37, 7194-7205
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 7194-7205
-
-
Mikheikin, A.L.1
Lin, H.K.2
Mehta, P.3
Jen-Jacobson, L.4
Trakselis, M.A.5
-
21
-
-
68249105256
-
Elucidating the kinetic mechanism of DNA polymerization catalyzed by Sulfolobus solfataricus P2 DNA polymerase B1
-
Brown, J. A. and Suo, Z. (2009) Elucidating the kinetic mechanism of DNA polymerization catalyzed by Sulfolobus solfataricus P2 DNA polymerase B1 Biochemistry 48, 7502-7511
-
(2009)
Biochemistry
, vol.48
, pp. 7502-7511
-
-
Brown, J.A.1
Suo, Z.2
-
22
-
-
34247181139
-
Mechanism of abasic lesion bypass catalyzed by a Y-family DNA polymerase
-
Fiala, K. A., Hypes, C. D., and Suo, Z. (2007) Mechanism of abasic lesion bypass catalyzed by a Y-family DNA polymerase J. Biol. Chem. 282, 8188-8198
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 8188-8198
-
-
Fiala, K.A.1
Hypes, C.D.2
Suo, Z.3
-
23
-
-
1242307762
-
Mechanism of DNA polymerization catalyzed by Sulfolobus solfataricus P2 DNA polymerase IV
-
Fiala, K. A. and Suo, Z. (2004) Mechanism of DNA polymerization catalyzed by Sulfolobus solfataricus P2 DNA polymerase IV Biochemistry 43, 2116-2125
-
(2004)
Biochemistry
, vol.43
, pp. 2116-2125
-
-
Fiala, K.A.1
Suo, Z.2
-
24
-
-
1242285442
-
Pre-steady-state kinetic studies of the fidelity of Sulfolobus solfataricus P2 DNA polymerase IV
-
Fiala, K. A. and Suo, Z. (2004) Pre-steady-state kinetic studies of the fidelity of Sulfolobus solfataricus P2 DNA polymerase IV Biochemistry 43, 2106-2115
-
(2004)
Biochemistry
, vol.43
, pp. 2106-2115
-
-
Fiala, K.A.1
Suo, Z.2
-
25
-
-
33644866040
-
Efficient and high fidelity incorporation of dCTP opposite 7,8-dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA polymerase Dpo4
-
Zang, H., Irimia, A., Choi, J. Y., Angel, K. C., Loukachevitch, L. V., Egli, M., and Guengerich, F. P. (2006) Efficient and high fidelity incorporation of dCTP opposite 7,8-dihydro-8-oxodeoxyguanosine by Sulfolobus solfataricus DNA polymerase Dpo4 J. Biol. Chem. 281, 2358-2372
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 2358-2372
-
-
Zang, H.1
Irimia, A.2
Choi, J.Y.3
Angel, K.C.4
Loukachevitch, L.V.5
Egli, M.6
Guengerich, F.P.7
-
26
-
-
23844454020
-
DNA adduct bypass polymerization by Sulfolobus solfataricus DNA polymerase Dpo4: Analysis and crystal structures of multiple base pair substitution and frameshift products with the adduct 1,N2-ethenoguanine
-
Zang, H., Goodenough, A. K., Choi, J. Y., Irimia, A., Loukachevitch, L. V., Kozekov, I. D., Angel, K. C., Rizzo, C. J., Egli, M., and Guengerich, F. P. (2005) DNA adduct bypass polymerization by Sulfolobus solfataricus DNA polymerase Dpo4: Analysis and crystal structures of multiple base pair substitution and frameshift products with the adduct 1,N2-ethenoguanine J. Biol. Chem. 280, 29750-29764
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 29750-29764
-
-
Zang, H.1
Goodenough, A.K.2
Choi, J.Y.3
Irimia, A.4
Loukachevitch, L.V.5
Kozekov, I.D.6
Angel, K.C.7
Rizzo, C.J.8
Egli, M.9
Guengerich, F.P.10
-
27
-
-
84859008782
-
Roles of the Y-family DNA polymerase Dbh in accurate replication of the Sulfolobus genome at high temperature
-
Sakofsky, C. J., Foster, P. L., and Grogan, D. W. (2012) Roles of the Y-family DNA polymerase Dbh in accurate replication of the Sulfolobus genome at high temperature DNA Repair 11, 391-400
-
(2012)
DNA Repair
, vol.11
, pp. 391-400
-
-
Sakofsky, C.J.1
Foster, P.L.2
Grogan, D.W.3
-
28
-
-
33847255445
-
Biochemical evidence of a physical interaction between Sulfolobus solfataricus B-family and Y-family DNA polymerases
-
De Felice, M., Medagli, B., Esposito, L., De Falco, M., Pucci, B., Rossi, M., Gruz, P., Nohmi, T., and Pisani, F. M. (2007) Biochemical evidence of a physical interaction between Sulfolobus solfataricus B-family and Y-family DNA polymerases Extremophiles 11, 277-282
-
(2007)
Extremophiles
, vol.11
, pp. 277-282
-
-
De Felice, M.1
Medagli, B.2
Esposito, L.3
De Falco, M.4
Pucci, B.5
Rossi, M.6
Gruz, P.7
Nohmi, T.8
Pisani, F.M.9
-
29
-
-
0034435652
-
Structural and thermodynamic strategies for site-specific DNA binding proteins
-
Jen-Jacobson, L., Engler, L. E., and Jacobson, L. A. (2000) Structural and thermodynamic strategies for site-specific DNA binding proteins Structure 8, 1015-1023
-
(2000)
Structure
, vol.8
, pp. 1015-1023
-
-
Jen-Jacobson, L.1
Engler, L.E.2
Jacobson, L.A.3
-
30
-
-
0034556938
-
Thermodynamic parameters of specific and nonspecific protein-DNA binding
-
Jen-Jacobson, L., Engler, L. E., Ames, J. T., Kurpiewski, M. R., and Grigorescu, A. (2000) Thermodynamic parameters of specific and nonspecific protein-DNA binding Supramol. Chem. 12, 143-160
-
(2000)
Supramol. Chem.
, vol.12
, pp. 143-160
-
-
Jen-Jacobson, L.1
Engler, L.E.2
Ames, J.T.3
Kurpiewski, M.R.4
Grigorescu, A.5
-
31
-
-
0141940263
-
Thermodynamics of the binding of Thermus aquaticus DNA polymerase to primed-template DNA
-
Datta, K. and LiCata, V. J. (2003) Thermodynamics of the binding of Thermus aquaticus DNA polymerase to primed-template DNA Nucleic Acids Res. 31, 5590-5597
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 5590-5597
-
-
Datta, K.1
Licata, V.J.2
-
32
-
-
33646144457
-
Temperature dependence and thermodynamics of Klenow polymerase binding to primed-template DNA
-
Datta, K., Wowor, A. J., Richard, A. J., and LiCata, V. J. (2006) Temperature dependence and thermodynamics of Klenow polymerase binding to primed-template DNA Biophys. J. 90, 1739-1751
-
(2006)
Biophys. J.
, vol.90
, pp. 1739-1751
-
-
Datta, K.1
Wowor, A.J.2
Richard, A.J.3
Licata, V.J.4
-
33
-
-
0026656932
-
Thermodynamics of Cro protein-DNA interactions
-
Takeda, Y., Ross, P. D., and Mudd, C. P. (1992) Thermodynamics of Cro protein-DNA interactions Proc. Natl. Acad. Sci. U.S.A. 89, 8180-8184
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 8180-8184
-
-
Takeda, Y.1
Ross, P.D.2
Mudd, C.P.3
-
34
-
-
0032489503
-
Thermodynamic characterization of non-sequence-specific DNA-binding by the Sso7d protein from Sulfolobus solfataricus
-
Lundback, T., Hansson, H., Knapp, S., Ladenstein, R., and Hard, T. (1998) Thermodynamic characterization of non-sequence-specific DNA-binding by the Sso7d protein from Sulfolobus solfataricus J. Mol. Biol. 276, 775-786
-
(1998)
J. Mol. Biol.
, vol.276
, pp. 775-786
-
-
Lundback, T.1
Hansson, H.2
Knapp, S.3
Ladenstein, R.4
Hard, T.5
-
35
-
-
0028283502
-
A thermodynamic study of the trp repressor-operator interaction
-
Ladbury, J. E., Wright, J. G., Sturtevant, J. M., and Sigler, P. B. (1994) A thermodynamic study of the trp repressor-operator interaction J. Mol. Biol. 238, 669-681
-
(1994)
J. Mol. Biol.
, vol.238
, pp. 669-681
-
-
Ladbury, J.E.1
Wright, J.G.2
Sturtevant, J.M.3
Sigler, P.B.4
-
36
-
-
0030592095
-
Structure of Taq polymerase with DNA at the polymerase active site
-
Eom, S. H., Wang, J., and Steitz, T. A. (1996) Structure of Taq polymerase with DNA at the polymerase active site Nature 382, 278-281
-
(1996)
Nature
, vol.382
, pp. 278-281
-
-
Eom, S.H.1
Wang, J.2
Steitz, T.A.3
-
37
-
-
0027231782
-
Structure of DNA polymerase i Klenow fragment bound to duplex DNA
-
Beese, L. S., Derbyshire, V., and Steitz, T. A. (1993) Structure of DNA polymerase I Klenow fragment bound to duplex DNA Science 260, 352-355
-
(1993)
Science
, vol.260
, pp. 352-355
-
-
Beese, L.S.1
Derbyshire, V.2
Steitz, T.A.3
-
38
-
-
14844294424
-
Protein production by auto-induction in high density shaking cultures
-
Studier, F. W. (2005) Protein production by auto-induction in high density shaking cultures Protein Expression Purif. 41, 207-234
-
(2005)
Protein Expression Purif.
, vol.41
, pp. 207-234
-
-
Studier, F.W.1
-
39
-
-
0032720338
-
Isothermal titration calorimetry of protein-protein interactions
-
Pierce, M. M., Raman, C. S., and Nall, B. T. (1999) Isothermal titration calorimetry of protein-protein interactions Methods 19, 213-221
-
(1999)
Methods
, vol.19
, pp. 213-221
-
-
Pierce, M.M.1
Raman, C.S.2
Nall, B.T.3
-
40
-
-
0034009520
-
Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling
-
Schuck, P. (2000) Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and Lamm equation modeling Biophys. J. 78, 1606-1619
-
(2000)
Biophys. J.
, vol.78
, pp. 1606-1619
-
-
Schuck, P.1
-
41
-
-
0002498995
-
Computer-aided interpretation of analytical sedimentation data for proteins
-
In (Harding, S. E. Ed.) pp, Royal Society of Chemistry, Cambridge, U.K
-
Laue, T. M., Saha, B. D., Ridgeway, T. M., and Pellettier, S. L. (1992) Computer-aided interpretation of analytical sedimentation data for proteins. In Analytical Ultracentrifugation in Biochemistry and Polymer Science (Harding, S. E., Ed.) pp 90-125, Royal Society of Chemistry, Cambridge, U.K.
-
(1992)
Analytical Ultracentrifugation in Biochemistry and Polymer Science
, pp. 90-125
-
-
Laue, T.M.1
Saha, B.D.2
Ridgeway, T.M.3
Pellettier, S.L.4
-
42
-
-
0042855798
-
On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation
-
Schuck, P. (2003) On the analysis of protein self-association by sedimentation velocity analytical ultracentrifugation Anal. Biochem. 320, 104-124
-
(2003)
Anal. Biochem.
, vol.320
, pp. 104-124
-
-
Schuck, P.1
-
43
-
-
36049004653
-
Selection of fluorophore and quencher pairs for fluorescent nucleic acid hybridization probes
-
Marras, S. A. (2006) Selection of fluorophore and quencher pairs for fluorescent nucleic acid hybridization probes Methods Mol. Biol. 335, 3-16
-
(2006)
Methods Mol. Biol.
, vol.335
, pp. 3-16
-
-
Marras, S.A.1
-
44
-
-
43049105331
-
Snapshots of a Y-family DNA polymerase in replication: Substrate-induced conformational transitions and implications for fidelity of Dpo4
-
Wong, J. H., Fiala, K. A., Suo, Z., and Ling, H. (2008) Snapshots of a Y-family DNA polymerase in replication: Substrate-induced conformational transitions and implications for fidelity of Dpo4 J. Mol. Biol. 379, 317-330
-
(2008)
J. Mol. Biol.
, vol.379
, pp. 317-330
-
-
Wong, J.H.1
Fiala, K.A.2
Suo, Z.3
Ling, H.4
-
45
-
-
0030040323
-
Reduced surface: An efficient way to compute molecular surfaces
-
Sanner, M. F., Olson, A. J., and Spehner, J. C. (1996) Reduced surface: An efficient way to compute molecular surfaces Biopolymers 38, 305-320
-
(1996)
Biopolymers
, vol.38
, pp. 305-320
-
-
Sanner, M.F.1
Olson, A.J.2
Spehner, J.C.3
-
46
-
-
0026684671
-
Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water
-
Spolar, R. S., Livingstone, J. R., and Record, M. T. (1992) Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water Biochemistry 31, 3947-3955
-
(1992)
Biochemistry
, vol.31
, pp. 3947-3955
-
-
Spolar, R.S.1
Livingstone, J.R.2
Record, M.T.3
-
47
-
-
67650546933
-
Structure-function relationships in miscoding by Sulfolobus solfataricus DNA polymerase Dpo4: Guanine N2,N2-dimethyl substitution produces inactive and miscoding polymerase complexes
-
Zhang, H., Eoff, R. L., Kozekov, I. D., Rizzo, C. J., Egli, M., and Guengerich, F. P. (2009) Structure-function relationships in miscoding by Sulfolobus solfataricus DNA polymerase Dpo4: Guanine N2,N2-dimethyl substitution produces inactive and miscoding polymerase complexes J. Biol. Chem. 284, 17687-17699
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 17687-17699
-
-
Zhang, H.1
Eoff, R.L.2
Kozekov, I.D.3
Rizzo, C.J.4
Egli, M.5
Guengerich, F.P.6
-
48
-
-
79951962335
-
Fluorescence-detected sedimentation in dilute and highly concentrated solutions
-
Kingsbury, J. S. and Laue, T. M. (2011) Fluorescence-detected sedimentation in dilute and highly concentrated solutions Methods Enzymol. 492, 283-304
-
(2011)
Methods Enzymol.
, vol.492
, pp. 283-304
-
-
Kingsbury, J.S.1
Laue, T.M.2
-
49
-
-
0024378717
-
Role of the hydrophobic effect in stability of site-specific protein-DNA complexes
-
Ha, J. H., Spolar, R. S., and Record, M. T., Jr. (1989) Role of the hydrophobic effect in stability of site-specific protein-DNA complexes J. Mol. Biol. 209, 801-816
-
(1989)
J. Mol. Biol.
, vol.209
, pp. 801-816
-
-
Ha, J.H.1
Spolar, R.S.2
Record Jr., M.T.3
-
50
-
-
23444450909
-
Coupling of local folding to site-specific binding of proteins to DNA
-
Spolar, R. S. and Record, M. T., Jr. (1994) Coupling of local folding to site-specific binding of proteins to DNA Science 263, 777-784
-
(1994)
Science
, vol.263
, pp. 777-784
-
-
Spolar, R.S.1
Record Jr., M.T.2
-
51
-
-
0033042625
-
Heat capacity and compactness of denatured proteins
-
Lazaridis, T. and Karplus, M. (1999) Heat capacity and compactness of denatured proteins Biophys. Chem. 78, 207-217
-
(1999)
Biophys. Chem.
, vol.78
, pp. 207-217
-
-
Lazaridis, T.1
Karplus, M.2
-
52
-
-
0029080688
-
Thermodynamic and kinetic characterization of the binding of the TATA binding protein to the adenovirus E4 promoter
-
Petri, V., Hsieh, M., and Brenowitz, M. (1995) Thermodynamic and kinetic characterization of the binding of the TATA binding protein to the adenovirus E4 promoter Biochemistry 34, 9977-9984
-
(1995)
Biochemistry
, vol.34
, pp. 9977-9984
-
-
Petri, V.1
Hsieh, M.2
Brenowitz, M.3
-
53
-
-
0030478012
-
Coupled folding and site-specific binding of the GCN4-bZIP transcription factor to the AP-1 and ATF/CREB DNA sites studied by microcalorimetry
-
Berger, C., Jelesarov, I., and Bosshard, H. R. (1996) Coupled folding and site-specific binding of the GCN4-bZIP transcription factor to the AP-1 and ATF/CREB DNA sites studied by microcalorimetry Biochemistry 35, 14984-14991
-
(1996)
Biochemistry
, vol.35
, pp. 14984-14991
-
-
Berger, C.1
Jelesarov, I.2
Bosshard, H.R.3
-
54
-
-
0027241925
-
Thermodynamics of the glucocorticoid receptor-DNA interaction: Binding of wild-type GR DBD to different response elements
-
Lundback, T., Cairns, C., Gustafsson, J. A., Carlstedt-Duke, J., and Hard, T. (1993) Thermodynamics of the glucocorticoid receptor-DNA interaction: Binding of wild-type GR DBD to different response elements Biochemistry 32, 5074-5082
-
(1993)
Biochemistry
, vol.32
, pp. 5074-5082
-
-
Lundback, T.1
Cairns, C.2
Gustafsson, J.A.3
Carlstedt-Duke, J.4
Hard, T.5
-
55
-
-
0029860343
-
Water-mediated protein-DNA interactions: The relationship of thermodynamics to structural detail
-
Morton, C. J. and Ladbury, J. E. (1996) Water-mediated protein-DNA interactions: The relationship of thermodynamics to structural detail Protein Sci. 5, 2115-2118
-
(1996)
Protein Sci.
, vol.5
, pp. 2115-2118
-
-
Morton, C.J.1
Ladbury, J.E.2
-
56
-
-
70350434060
-
Role of Water and Effects of Small Ions in Site-specific Protein-DNA Interactions
-
In, Chapter 2, pp, The Royal Society of Chemistry, Cambridge, U.K
-
Jen-Jacobson, L. and Jacobson, L. A. (2008) Role of Water and Effects of Small Ions in Site-specific Protein-DNA Interactions. In Protein-Nucleic Acid Interactions: Structural Biology, Chapter 2, pp 13-46, The Royal Society of Chemistry, Cambridge, U.K.
-
(2008)
Protein-Nucleic Acid Interactions: Structural Biology
, pp. 13-46
-
-
Jen-Jacobson, L.1
Jacobson, L.A.2
-
57
-
-
0020953558
-
On the processivity of DNA replication
-
Fairfield, F. R., Newport, J. W., Dolejsi, M. K., and von Hippel, P. H. (1983) On the processivity of DNA replication J. Biomol. Struct. Dyn. 1, 715-727
-
(1983)
J. Biomol. Struct. Dyn.
, vol.1
, pp. 715-727
-
-
Fairfield, F.R.1
Newport, J.W.2
Dolejsi, M.K.3
Von Hippel, P.H.4
-
58
-
-
68949136996
-
Conformational changes during nucleotide selection by Sulfolobus solfataricus DNA polymerase Dpo4
-
Eoff, R. L., Sanchez-Ponce, R., and Guengerich, F. P. (2009) Conformational changes during nucleotide selection by Sulfolobus solfataricus DNA polymerase Dpo4 J. Biol. Chem. 284, 21090-21099
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 21090-21099
-
-
Eoff, R.L.1
Sanchez-Ponce, R.2
Guengerich, F.P.3
-
59
-
-
41849102779
-
Mechanistic consequences of temperature on DNA polymerization catalyzed by a Y-family DNA polymerase
-
Fiala, K. A., Sherrer, S. M., Brown, J. A., and Suo, Z. (2008) Mechanistic consequences of temperature on DNA polymerization catalyzed by a Y-family DNA polymerase Nucleic Acids Res. 36, 1990-2001
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 1990-2001
-
-
Fiala, K.A.1
Sherrer, S.M.2
Brown, J.A.3
Suo, Z.4
-
60
-
-
34247183642
-
Sloppy bypass of an abasic lesion catalyzed by a Y-family DNA polymerase
-
Fiala, K. A. and Suo, Z. (2007) Sloppy bypass of an abasic lesion catalyzed by a Y-family DNA polymerase J. Biol. Chem. 282, 8199-8206
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 8199-8206
-
-
Fiala, K.A.1
Suo, Z.2
-
61
-
-
27144542782
-
Fidelity of Dpo4: Effect of metal ions, nucleotide selection and pyrophosphorolysis
-
Vaisman, A., Ling, H., Woodgate, R., and Yang, W. (2005) Fidelity of Dpo4: Effect of metal ions, nucleotide selection and pyrophosphorolysis EMBO J. 24, 2957-2967
-
(2005)
EMBO J.
, vol.24
, pp. 2957-2967
-
-
Vaisman, A.1
Ling, H.2
Woodgate, R.3
Yang, W.4
-
62
-
-
1642382214
-
Snapshots of replication through an abasic lesion; Structural basis for base substitutions and frameshifts
-
Ling, H., Boudsocq, F., Woodgate, R., and Yang, W. (2004) Snapshots of replication through an abasic lesion; structural basis for base substitutions and frameshifts Mol. Cell 13, 751-762
-
(2004)
Mol. Cell
, vol.13
, pp. 751-762
-
-
Ling, H.1
Boudsocq, F.2
Woodgate, R.3
Yang, W.4
-
63
-
-
80052406753
-
Roles of the four DNA polymerases of the crenarchaeon Sulfolobus solfataricus and accessory proteins in DNA replication
-
Choi, J. Y., Eoff, R. L., Pence, M. G., Wang, J., Martin, M. V., Kim, E. J., Folkmann, L. M., and Guengerich, F. P. (2011) Roles of the four DNA polymerases of the crenarchaeon Sulfolobus solfataricus and accessory proteins in DNA replication J. Biol. Chem. 286, 31180-31193
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 31180-31193
-
-
Choi, J.Y.1
Eoff, R.L.2
Pence, M.G.3
Wang, J.4
Martin, M.V.5
Kim, E.J.6
Folkmann, L.M.7
Guengerich, F.P.8
-
64
-
-
65249138294
-
Mechanistic studies of the bypass of a bulky single-base lesion catalyzed by a Y-family DNA polymerase
-
Sherrer, S. M., Brown, J. A., Pack, L. R., Jasti, V. P., Fowler, J. D., Basu, A. K., and Suo, Z. (2009) Mechanistic studies of the bypass of a bulky single-base lesion catalyzed by a Y-family DNA polymerase J. Biol. Chem. 284, 6379-6388
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 6379-6388
-
-
Sherrer, S.M.1
Brown, J.A.2
Pack, L.R.3
Jasti, V.P.4
Fowler, J.D.5
Basu, A.K.6
Suo, Z.7
-
65
-
-
33845638804
-
Mechanism of template-independent nucleotide incorporation catalyzed by a template-dependent DNA polymerase
-
Fiala, K. A., Brown, J. A., Ling, H., Kshetry, A. K., Zhang, J., Taylor, J. S., Yang, W., and Suo, Z. (2007) Mechanism of template-independent nucleotide incorporation catalyzed by a template-dependent DNA polymerase J. Mol. Biol. 365, 590-602
-
(2007)
J. Mol. Biol.
, vol.365
, pp. 590-602
-
-
Fiala, K.A.1
Brown, J.A.2
Ling, H.3
Kshetry, A.K.4
Zhang, J.5
Taylor, J.S.6
Yang, W.7
Suo, Z.8
-
66
-
-
70350714934
-
Structural and functional analysis of Sulfolobus solfataricus Y-family DNA polymerase Dpo4-catalyzed bypass of the malondialdehyde-deoxyguanosine adduct
-
Eoff, R. L., Stafford, J. B., Szekely, J., Rizzo, C. J., Egli, M., Guengerich, F. P., and Marnett, L. J. (2009) Structural and functional analysis of Sulfolobus solfataricus Y-family DNA polymerase Dpo4-catalyzed bypass of the malondialdehyde-deoxyguanosine adduct Biochemistry 48, 7079-7088
-
(2009)
Biochemistry
, vol.48
, pp. 7079-7088
-
-
Eoff, R.L.1
Stafford, J.B.2
Szekely, J.3
Rizzo, C.J.4
Egli, M.5
Guengerich, F.P.6
Marnett, L.J.7
-
67
-
-
37549025441
-
Structure and activity of Y-class DNA polymerase Dpo4 from Sulfolobus solfataricus with templates containing the hydrophobic thymine analog 2,4-difluorotoluene
-
Irimia, A., Eoff, R. L., Pallan, P. S., Guengerich, F. P., and Egli, M. (2007) Structure and activity of Y-class DNA polymerase Dpo4 from Sulfolobus solfataricus with templates containing the hydrophobic thymine analog 2,4-difluorotoluene J. Biol. Chem. 282, 36421-36433
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 36421-36433
-
-
Irimia, A.1
Eoff, R.L.2
Pallan, P.S.3
Guengerich, F.P.4
Egli, M.5
-
68
-
-
0034762679
-
Crystal structure of a DinB family error-prone DNA polymerase from Sulfolobus solfataricus
-
Silvian, L. F., Toth, E. A., Pham, P., Goodman, M. F., and Ellenberger, T. (2001) Crystal structure of a DinB family error-prone DNA polymerase from Sulfolobus solfataricus Nat. Struct. Biol. 8, 984-989
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 984-989
-
-
Silvian, L.F.1
Toth, E.A.2
Pham, P.3
Goodman, M.F.4
Ellenberger, T.5
-
69
-
-
40849124424
-
Structural insights into the generation of single-base deletions by the y family DNA polymerase dbh
-
Wilson, R. C. and Pata, J. D. (2008) Structural insights into the generation of single-base deletions by the Y family DNA polymerase dbh Mol. Cell 29, 767-779
-
(2008)
Mol. Cell
, vol.29
, pp. 767-779
-
-
Wilson, R.C.1
Pata, J.D.2
-
70
-
-
77949570579
-
Structural diversity of the Y-family DNA polymerases
-
Pata, J. D. (2010) Structural diversity of the Y-family DNA polymerases Biochim. Biophys. Acta 1804, 1124-1135
-
(2010)
Biochim. Biophys. Acta
, vol.1804
, pp. 1124-1135
-
-
Pata, J.D.1
-
71
-
-
0242317687
-
Processing of DNA lesions by archaeal DNA polymerases from Sulfolobus solfataricus
-
Gruz, P., Shimizu, M., Pisani, F. M., De, F. M., Kanke, Y., and Nohmi, T. (2003) Processing of DNA lesions by archaeal DNA polymerases from Sulfolobus solfataricus Nucleic Acids Res. 31, 4024-4030
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 4024-4030
-
-
Gruz, P.1
Shimizu, M.2
Pisani, F.M.3
De, F.M.4
Kanke, Y.5
Nohmi, T.6
-
72
-
-
70350508554
-
Global conformational dynamics of a Y-family DNA polymerase during catalysis
-
Xu, C., Maxwell, B. A., Brown, J. A., Zhang, L., and Suo, Z. (2009) Global conformational dynamics of a Y-family DNA polymerase during catalysis PLoS Biol. 7, e1000225
-
(2009)
PLoS Biol.
, vol.7
, pp. 1000225
-
-
Xu, C.1
Maxwell, B.A.2
Brown, J.A.3
Zhang, L.4
Suo, Z.5
-
73
-
-
3543028588
-
Investigating the role of the little finger domain of Y-family DNA polymerases in low fidelity synthesis and translesion replication
-
Boudsocq, F., Kokoska, R. J., Plosky, B. S., Vaisman, A., Ling, H., Kunkel, T. A., Yang, W., and Woodgate, R. (2004) Investigating the role of the little finger domain of Y-family DNA polymerases in low fidelity synthesis and translesion replication J. Biol. Chem. 279, 32932-32940
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 32932-32940
-
-
Boudsocq, F.1
Kokoska, R.J.2
Plosky, B.S.3
Vaisman, A.4
Ling, H.5
Kunkel, T.A.6
Yang, W.7
Woodgate, R.8
-
74
-
-
79958854387
-
Strand annealing and terminal transferase activities of a B-family DNA polymerase
-
Zuo, Z., Lin, H. K., and Trakselis, M. A. (2011) Strand annealing and terminal transferase activities of a B-family DNA polymerase Biochemistry 50, 5379-5390
-
(2011)
Biochemistry
, vol.50
, pp. 5379-5390
-
-
Zuo, Z.1
Lin, H.K.2
Trakselis, M.A.3
-
75
-
-
0002638463
-
Heat capacity and entropy changes in processes involving proteins
-
Sturtevant, J. M. (1977) Heat capacity and entropy changes in processes involving proteins Proc. Natl. Acad. Sci. U.S.A. 74, 2236-2240
-
(1977)
Proc. Natl. Acad. Sci. U.S.A.
, vol.74
, pp. 2236-2240
-
-
Sturtevant, J.M.1
-
76
-
-
0021093448
-
Enthalpy-entropy compensation and heat capacity changes for protein-ligand interactions: General thermodynamic models and data for the binding of nucleotides to ribonuclease A
-
Eftink, M. R., Anusiem, A. C., and Biltonen, R. L. (1983) Enthalpy-entropy compensation and heat capacity changes for protein-ligand interactions: General thermodynamic models and data for the binding of nucleotides to ribonuclease A Biochemistry 22, 3884-3896
-
(1983)
Biochemistry
, vol.22
, pp. 3884-3896
-
-
Eftink, M.R.1
Anusiem, A.C.2
Biltonen, R.L.3
-
77
-
-
15444375819
-
Effect of mutation of the Sac7d intercalating residues on the temperature dependence of DNA distortion and binding thermodynamics
-
Peters, W. B., Edmondson, S. P., and Shriver, J. W. (2005) Effect of mutation of the Sac7d intercalating residues on the temperature dependence of DNA distortion and binding thermodynamics Biochemistry 44, 4794-4804
-
(2005)
Biochemistry
, vol.44
, pp. 4794-4804
-
-
Peters, W.B.1
Edmondson, S.P.2
Shriver, J.W.3
-
79
-
-
33645971001
-
Effects of monovalent anions on a temperature-dependent heat capacity change for Escherichia coli SSB tetramer binding to single-stranded DNA
-
Kozlov, A. G. and Lohman, T. M. (2006) Effects of monovalent anions on a temperature-dependent heat capacity change for Escherichia coli SSB tetramer binding to single-stranded DNA Biochemistry 45, 5190-5205
-
(2006)
Biochemistry
, vol.45
, pp. 5190-5205
-
-
Kozlov, A.G.1
Lohman, T.M.2
-
80
-
-
0033780671
-
Large contributions of coupled protonation equilibria to the observed enthalpy and heat capacity changes for ssDNA binding to Escherichia coli SSB protein
-
Kozlov, A. G. and Lohman, T. M. (2000) Large contributions of coupled protonation equilibria to the observed enthalpy and heat capacity changes for ssDNA binding to Escherichia coli SSB protein Proteins 4 (Suppl.) 8-22
-
(2000)
Proteins
, vol.4
, Issue.SUPPL.
, pp. 8-22
-
-
Kozlov, A.G.1
Lohman, T.M.2
-
81
-
-
0035816212
-
Specific and non-specific interactions of integration host factor with DNA: Thermodynamic evidence for disruption of multiple IHF surface salt-bridges coupled to DNA binding
-
Holbrook, J. A., Tsodikov, O. V., Saecker, R. M., and Record, M. T., Jr. (2001) Specific and non-specific interactions of integration host factor with DNA: Thermodynamic evidence for disruption of multiple IHF surface salt-bridges coupled to DNA binding J. Mol. Biol. 310, 379-401
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 379-401
-
-
Holbrook, J.A.1
Tsodikov, O.V.2
Saecker, R.M.3
Record Jr., M.T.4
-
82
-
-
1042298819
-
Heat capacity effects of water molecules and ions at a protein-DNA interface
-
Bergqvist, S., Williams, M. A., O'Brien, R., and Ladbury, J. E. (2004) Heat capacity effects of water molecules and ions at a protein-DNA interface J. Mol. Biol. 336, 829-842
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 829-842
-
-
Bergqvist, S.1
Williams, M.A.2
O'Brien, R.3
Ladbury, J.E.4
-
83
-
-
80052322490
-
Interactions of replication versus repair DNA substrates with the Pol i DNA polymerases from Escherichia coli and Thermus aquaticus
-
Yang, Y. and LiCata, V. J. (2011) Interactions of replication versus repair DNA substrates with the Pol I DNA polymerases from Escherichia coli and Thermus aquaticus Biophys. Chem. 159, 188-193
-
(2011)
Biophys. Chem.
, vol.159
, pp. 188-193
-
-
Yang, Y.1
Licata, V.J.2
-
84
-
-
67650559447
-
Local conformations and competitive binding affinities of single- and double-stranded primer-template DNA at the polymerization and editing active sites of DNA polymerases
-
Datta, K., Johnson, N. P., LiCata, V. J., and von Hippel, P. H. (2009) Local conformations and competitive binding affinities of single- and double-stranded primer-template DNA at the polymerization and editing active sites of DNA polymerases J. Biol. Chem. 284, 17180-17193
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 17180-17193
-
-
Datta, K.1
Johnson, N.P.2
Licata, V.J.3
Von Hippel, P.H.4
-
85
-
-
0037470558
-
The thermodynamics of protein-protein recognition as characterized by a combination of volumetric and calorimetric techniques: The binding of turkey ovomucoid third domain to α-chymotrypsin
-
Filfil, R. and Chalikian, T. V. (2003) The thermodynamics of protein-protein recognition as characterized by a combination of volumetric and calorimetric techniques: The binding of turkey ovomucoid third domain to α-chymotrypsin J. Mol. Biol. 326, 1271-1288
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 1271-1288
-
-
Filfil, R.1
Chalikian, T.V.2
-
86
-
-
0031547981
-
Dissecting the energetics of a protein-protein interaction: The binding of ovomucoid third domain to elastase
-
Baker, B. M. and Murphy, K. P. (1997) Dissecting the energetics of a protein-protein interaction: The binding of ovomucoid third domain to elastase J. Mol. Biol. 268, 557-569
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 557-569
-
-
Baker, B.M.1
Murphy, K.P.2
-
87
-
-
47649130715
-
Thermodynamics of T-cell receptor-peptide/MHC interactions: Progress and opportunities
-
Armstrong, K. M., Insaidoo, F. K., and Baker, B. M. (2008) Thermodynamics of T-cell receptor-peptide/MHC interactions: Progress and opportunities J. Mol. Recognit. 21, 275-287
-
(2008)
J. Mol. Recognit.
, vol.21
, pp. 275-287
-
-
Armstrong, K.M.1
Insaidoo, F.K.2
Baker, B.M.3
-
88
-
-
0031552366
-
Thermodynamics of the interaction of barnase and barstar: Changes in free energy versus changes in enthalpy on mutation
-
Frisch, C., Schreiber, G., Johnson, C. M., and Fersht, A. R. (1997) Thermodynamics of the interaction of barnase and barstar: Changes in free energy versus changes in enthalpy on mutation J. Mol. Biol. 267, 696-706
-
(1997)
J. Mol. Biol.
, vol.267
, pp. 696-706
-
-
Frisch, C.1
Schreiber, G.2
Johnson, C.M.3
Fersht, A.R.4
-
89
-
-
0033616833
-
Regulation of catalytic activity and processivity of human telomerase
-
Sun, D., Lopez-Guajardo, C. C., Quada, J., Hurley, L. H., and Von Hoff, D. D. (1999) Regulation of catalytic activity and processivity of human telomerase Biochemistry 38, 4037-4044
-
(1999)
Biochemistry
, vol.38
, pp. 4037-4044
-
-
Sun, D.1
Lopez-Guajardo, C.C.2
Quada, J.3
Hurley, L.H.4
Von Hoff, D.D.5
-
90
-
-
0035179213
-
Intricacies in ATP-dependent clamp loading: Variations across replication systems
-
Trakselis, M. A. and Benkovic, S. J. (2001) Intricacies in ATP-dependent clamp loading: Variations across replication systems Structure 9, 999-1004
-
(2001)
Structure
, vol.9
, pp. 999-1004
-
-
Trakselis, M.A.1
Benkovic, S.J.2
-
91
-
-
33645303495
-
The phi29 DNA polymerase: Protein-primer structure suggests a model for the initiation to elongation transition
-
Kamtekar, S., Berman, A. J., Wang, J., Lazaro, J. M., de, V. M., Blanco, L., Salas, M., and Steitz, T. A. (2006) The phi29 DNA polymerase: Protein-primer structure suggests a model for the initiation to elongation transition EMBO J. 25, 1335-1343
-
(2006)
EMBO J.
, vol.25
, pp. 1335-1343
-
-
Kamtekar, S.1
Berman, A.J.2
Wang, J.3
Lazaro, J.M.4
De, V.M.5
Blanco, L.6
Salas, M.7
Steitz, T.A.8
-
92
-
-
0024335104
-
Highly efficient DNA synthesis by the phage phi29 DNA polymerase. Symmetrical mode of DNA replication
-
Blanco, L., Bernad, A., Lazaro, J. M., Martin, G., Garmendia, C., and Salas, M. (1989) Highly efficient DNA synthesis by the phage phi29 DNA polymerase. Symmetrical mode of DNA replication J. Biol. Chem. 264, 8935-8940
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 8935-8940
-
-
Blanco, L.1
Bernad, A.2
Lazaro, J.M.3
Martin, G.4
Garmendia, C.5
Salas, M.6
-
93
-
-
61349147834
-
Kinetic analysis of correct nucleotide insertion by a Y-family DNA polymerase reveals conformational changes both prior to and following phosphodiester bond formation as detected by tryptophan fluorescence
-
Beckman, J. W., Wang, Q., and Guengerich, F. P. (2008) Kinetic analysis of correct nucleotide insertion by a Y-family DNA polymerase reveals conformational changes both prior to and following phosphodiester bond formation as detected by tryptophan fluorescence J. Biol. Chem. 283, 36711-36723
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 36711-36723
-
-
Beckman, J.W.1
Wang, Q.2
Guengerich, F.P.3
-
94
-
-
0037251411
-
A heterotrimeric PCNA in the hyperthermophilic archaeon Sulfolobus solfataricus
-
Dionne, I., Nookala, R. K., Jackson, S. P., Doherty, A. J., and Bell, S. D. (2003) A heterotrimeric PCNA in the hyperthermophilic archaeon Sulfolobus solfataricus Mol. Cell 11, 275-282
-
(2003)
Mol. Cell
, vol.11
, pp. 275-282
-
-
Dionne, I.1
Nookala, R.K.2
Jackson, S.P.3
Doherty, A.J.4
Bell, S.D.5
-
95
-
-
40549087271
-
On the mechanism of loading the PCNA sliding clamp by RFC
-
Dionne, I., Brown, N. J., Woodgate, R., and Bell, S. D. (2008) On the mechanism of loading the PCNA sliding clamp by RFC Mol. Microbiol. 68, 216-222
-
(2008)
Mol. Microbiol.
, vol.68
, pp. 216-222
-
-
Dionne, I.1
Brown, N.J.2
Woodgate, R.3
Bell, S.D.4
-
96
-
-
36749072168
-
Responses of hyperthermophilic crenarchaea to UV irradiation
-
Gotz, D., Paytubi, S., Munro, S., Lundgren, M., Bernander, R., and White, M. F. (2007) Responses of hyperthermophilic crenarchaea to UV irradiation Genome Biol. 8, R220
-
(2007)
Genome Biol.
, vol.8
, pp. 220
-
-
Gotz, D.1
Paytubi, S.2
Munro, S.3
Lundgren, M.4
Bernander, R.5
White, M.F.6
-
97
-
-
36749025630
-
Response of the hyperthermophilic archaeon Sulfolobus solfataricus to UV damage
-
Frols, S., Gordon, P. M., Panlilio, M. A., Duggin, I. G., Bell, S. D., Sensen, C. W., and Schleper, C. (2007) Response of the hyperthermophilic archaeon Sulfolobus solfataricus to UV damage J. Bacteriol. 189, 8708-8718
-
(2007)
J. Bacteriol.
, vol.189
, pp. 8708-8718
-
-
Frols, S.1
Gordon, P.M.2
Panlilio, M.A.3
Duggin, I.G.4
Bell, S.D.5
Sensen, C.W.6
Schleper, C.7
|