Response of the hyperthermophilic archaeon Sulfolobus solfataricus to UV damage

Journal of Bacteriology

Volumn 189, Issue 23, 2007, Pages 8708-8718

  Fröls, Sabrina ^a   Gordon, Paul M K ^b   Panlilio, Mayi Arcellana ^b   Duggin, Iain G ^c   Bell, Stephen D ^c   Sensen, Christoph W ^b,d   Schleper, Christa ^a  

^a UNIVERSITY OF BERGEN   (Norway)

^b UNIVERSITY OF CALGARY   (Canada)

^c HUTCHISON MRC RESEARCH CENTRE   (United Kingdom)

^d UNIVERSITY OF CALGARY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL CELL; BACTERIAL GENOME; CELL CYCLE; CELL GROWTH; CELL SURVIVAL; CONTROLLED STUDY; DNA MICROARRAY; DNA REPLICATION; FLOW CYTOMETRY; HYPERTHERMOPHILIC ARCHAEON; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SULFOLOBUS SOLFATARICUS; ULTRAVIOLET IRRADIATION; UPREGULATION;

BACTERIAL PROTEINS; CELL CYCLE; DNA DAMAGE; DNA REPAIR; DNA, BACTERIAL; DOSE-RESPONSE RELATIONSHIP, RADIATION; GENE EXPRESSION REGULATION, BACTERIAL; SULFOLOBUS SOLFATARICUS; TIME FACTORS; TRANSCRIPTION, GENETIC; ULTRAVIOLET RAYS;

ARCHAEA; CRENARCHAEOTA; SULFOLOBUS SOLFATARICUS;

EID: 36749025630     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.01016-07     Document Type: Article

References (52)

1. Albers, S. V., and A. J. Driessen. 2005. Analysis of ATPases of putative secretion operons in the thermoacidophilic archaeon Sulfolobus solfataricus. Microbiology 151:763-773.
2. Aravind, L., D. R. Walker, and E. V. Koonin. 1999. Conserved domains in DNA repair proteins and evolution of repair systems. Nucleic Acids Res. 27:1223-1242.
3. Baliga, N. S., S. J. Bjork, R. Bonneau, M. Pan, C. Iloanusi, M. C. Kottemann, L. Hood, and J. DiRuggiero. 2004. Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1. Genome Res. 14:1025-1035.
4. Bonura, T., and K. C. Smith. 1975. Enzymatic production of deoxyribonucleic acid double-strand breaks after ultraviolet irradiation of Escherichia coli K-12. J. Bacteriol. 121:511-517.
5. Chirgwin, J. M., A. E. Przybyla, R. J. MacDonald, and W. J. Rutter. 1979. Isolation of biologically active ribonucleic acid from sources enriched in ribonuclease. Biochemistry 18:5294-5299.
6. Constantinesco, F., P. Forterre, E. V. Koonin, L. Aravind, and C. Elie. 2004. A bipolar DNA helicase gene, herA, clusters with rad50, mre11 and nurA genes in thermophilic archaea. Nucleic Acids Res. 32:1439-1447.
7. Crowley, D. J., I. Boubriak, B. R. Berquist, M. Clark, E. Richard, L. Sullivan, S. Dassarma, and S. McCready. 2006. The uvrA, uvrB and uvrC genes are required for repair of ultraviolet light induced DNA photoproducts in Halobacterium sp. NRC-1. Saline Systems 2:11.
8. Dorazi, R., D. Gotz, S. Munro, R. Bernander, and M. F. White. 2007. Equal rates of repair of DNA photoproducts in transcribed and non-transcribed strands in Sulfolobus solfataricus. Mol. Microbiol. 63:521-529.
9. Frols, S., P. M. Gordon, M. A. Panlilio, C. Schleper, and C. W. Sensen. 2007. Elucidating the transcription cycle of the UV-inducible hyperthermophilic archaeal virus SSV1 by DNA microarrays. Virology 356:48-59.
10. Garinis, G. A., J. R. Mitchell, M. J. Moorhouse, K. Hanada, H. de Waard, D. Vandeputte, J. Jans, K. Brand, M. Smid, P. J. van der Spek, J. H. Hoeljmakers, R. Kanaar, and G. T. van der Horst. 2005. Transcriptome analysis reveals cyclobutane pyrimidine dimers as a major source of UV-induced DNA breaks. EMBO J. 24:3952-3962.
11. Garrett, R. A., and H.-P. Klenk. 2006. Archaea: evolution, physiology and molecular biology. Blackwell Publishing Professional, Maiden, MA.
12. Grogan, D. W. 1989. Phenotypic characterization of the archaebacterial genus Sulfolobus: comparison of five wild-type strains. J. Bacteriol. 171:6710-6719.
13. Grogan, D. W. 2004. Stability and repair of DNA in hyperthermophilic Archaea. Curr. Issues. Mol. Biol. 6:137-144.
14. Grogan, D. W. 2000. The question of DNA repair in hyperthermophilic archaea. Trends Microbiol. 8:180-185.
15. Grogan, D. W., G. T. Carver, and J. W. Drake. 2001. Genetic fidelity under harsh conditions: analysis of spontaneous mutation in the thermoacidophilic archaeon Sulfolobus acidocaldarius. Proc. Natl. Acad. Sci. USA 98:7928-7933.
16. Haber, J. E. 2006. Chromosome breakage and repair. Genetics 173:1181-1185.
17. Hansen, J. E., A. C. Dill, and D. W. Grogan. 2005. Conjugational genetic exchange in the hyperthermophilic archaeon Sulfolobus acidocaldarius: intragenic recombination with minimal dependence on marker separation. J. Bacteriol. 187:805-809.
18. Hanzelmann, P., and H. Schindelin. 2006. Binding of 5′-GTP to the C-terminal FeS cluster of the radical S-adenosylmethionine enzyme MoaA provides insights into its mechanism. Proc. Natl. Acad. Sci. USA 103:6829-6834.
19. Hayashi, M., T. Fukuzawa, H. Sorimachi, and T. Maeda. 2005. Constitutive activation of the pH-responsive Rim101 pathway in yeast mutants defective in late steps of the MVB/ESCRT pathway. Mol. Cell. Biol. 25:9478-9490.
20. Hjort, K., and R. Bernander. 1999. Changes in cell size and DNA content in Sulfolobus cultures during dilution and temperature shift experiments. J. Bacteriol. 181:5669-5675.
21. Hopfner, K. P., C. D. Putnam, and J. A. Tainer. 2002. DNA double-strand break repair from head to tail. Curr. Opin. Struct. Biol. 12:115-122.
22. Jazayeri, A., J. Falck, C. Lukas, J. Bartek, G. C. Smith, J. Lukas, and S. P. Jackson. 2006. ATM- and cell cycle-dependent regulation of ATR in response to DNA double-strand breaks. Nat. Cell Biol. 8:37-45.
23. Kelman, Z., and M. F. White. 2005. Archaeal DNA replication and repair. Curr. Opin. Microbiol. 8:669-676.
24. Kulaeva, O. I., E. V. Koonin, J. P. McDonald, S. K. Randall, N. Rabinovich, J. F. Connaughton, A. S. Levine, and R. Woodgate. 1996. Identification of a DinB/UmuC homolog in the archeon Sulfolobus solfataricus. Mutat. Res. 357:245-253.
25. Lundgren, M., and R. Bernander. 2007. Genome-wide transcription map of an archaeal cell cycle. Proc. Natl. Acad. Sci. USA 104:2939-2944.
26. Makarova, K. S., L. Aravind, N. V. Grishin, I. B. Rogozin, and E. V. Koonin. 2002. A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. Nucleic Acids Res. 30:482-496.
27. Martin, A., S. Yeats, D. Janekovic, W. D. Reiter, W. Aicher, and W. Zillig. 1984. SAV 1, a temperate U.V.-inducible DNA virus-like particle from the archaebacterium Sulfolobus acidocaldarius isolate B12. EMBO J. 3:2165-2168.
28. Martusewitsch, E., C. W. Sensen, and C. Schleper. 2000. High spontaneous mutation rate in the hyperthermophilic archaeon Sulfolobus solfataricus is mediated by transposable elements. J. Bacteriol. 182:2574-2581.
29. McCready, S., and L. Marcello. 2003. Repair of UV damage in Halobacterium salinarum. Biochem. Soc. Trans. 31:694-698.
30. McCready, S., J. A. Muller, I. Boubriak, B. R. Berquist, W. L. Ng, and S. Dassarma. 2005. UV irradiation induces homologous recombination genes in the model archaeon, Halobacterium sp. NRC-1. Saline Systems 1:3.
31. Papke, R. T., J. E. Koenig, F. Rodriguez-Valera, and W. F. Doolittle. 2004. Frequent recombination in a saltern population of Halorubrum. Science 306:1928-1929.
32. Raychaudhuri, S., P. Karmakar, D. Choudhary, A. Sarma, and A. R. Thakur. 2003. Effect of heavy ion irradiation on DNA DSB repair in Methanosarcina barkeri. Anaerobe 9:15-21.
33. Reilly, M. S., and D. W. Grogan. 2002. Biological effects of DNA damage in the hyperthermophilic archaeon Sulfolobus acidocaldarius. FEMS Microbiol. Lett. 208:29-34.
34. Reilly, M. S., and D. W. Grogan. 2001. Characterization of intragenic recombination in a hyperthermophilic archaeon via conjugational DNA exchange. J. Bacteriol. 183:2943-2946.
35. Reiter, W. D., P. Palm, and W. Zillig. 1988. Analysis of transcription in the archaebacterium Sulfolobus indicates that archaebacterial promoters are homologous to eukaryotic pol II promoters. Nucleic Acids Res. 16:1-19.
36. Robb, F. T., D. L. Maeder, J. R. Brown, J. DiRuggiero, M. D. Stump, R. K. Yeh, R. B. Weiss, and D. M. Dunn. 2001. Genomic sequence of hyperthermophile, Pyrococcus furiosus: implications for physiology and enzymology. Methods Enzymol. 330:134-157.
37. Robinson, N. P., K. A. Blood, S. A. McCallum, P. A. Edwards, and S. D. Bell. 2007. Sister chromatid junctions in the hyperthermophilic archaeon Sulfolobus solfataricus. EMBO J. 26:816-824.
38. Robinson, N. P., I. Dionne, M. Lundgren, V. L. Marsh, R. Bernander, and S. D. Bell. 2004. Identification of two origins of replication in the single chromosome of the archaeon Sulfolobus solfataricus. Cell 116:25-38.
39. Romano, V., A. Napoli, V. Salerno, A. Valenti, M. Rossi, and M. Ciaramella. 2007. Lack of strand-specific repair of UV-induced DNA lesions in three genes of the archaeon Sulfolobus solfataricus. J. Mol. Biol. 365:921-929.
40. Rosenshine, I., R. Tchelet, and M. Mevarech. 1989. The mechanism of DNA transfer in the mating system of an archaebacterium. Science 245:1387-1389.
41. Saeed, A. I., V. Sharov, J. White, J. Li, W. Liang, N. Bhagabati, J. Braisted, M. Klapa, T. Currier, M. Thiagarajan, A. Sturn, M. Snuffin, A. Rezantsev, D. Popov, A. Ryltsov, E. Kostukovich, I. Borisovsky, Z. Liu, A. Vinsavich, V. Trush, and J. Quackenbush. 2003. TM4: a free, open-source system for microarray data management and analysis. BioTechniques 34:374-378.
42. Salerno, V., A. Napoli, M. F. White, M. Rossi, and M. Ciaramella. 2003. Transcriptional response to DNA damage in the archaeon Sulfolobus solfataricus. Nucleic Acids Res. 31:6127-6138.
43. Sandler, S. J., L. H. Satin, H. S. Samra, and A. J. Clark. 1996. recA-like genes from three archaean species with putative protein products similar to Rad51 and Dmc1 proteins of the yeast Saccharomyces cerevisiae. Nucleic Acids Res. 24:2125-2132.
44. Schleper, C., I. Holz, D. Janekovic, J. Murphy, and W. Zillig. 1995. A multicopy plasmid of the extremely thermophilic archaeon Sulfolobus effects its transfer to recipients by mating. J. Bacteriol. 177:4417-4426.
45. Schleper, C., K. Kubo, and W. Zillig. 1992. The particle SSV1 from the extremely thermophilic archaeon Sulfolobus is a virus: demonstration of infectivity and of transfection with viral DNA. Proc. Natl. Acad. Sci. USA 89:7645-7649.
46. Schleper, C., R. Roder, T. Singer, and W. Zillig. 1994. An insertion element of the extremely thermophilic archaeon Sulfolobus solfataricus transposes into the endogenous beta-galactosidase gene. Mol. Gen. Genet. 243:91-96.
47. Schmidt, K. J., K. E. Beck, and D. W. Grogan. 1999. UV stimulation of chromosomal marker exchange in Sulfolobus acidocaldarius: implications for DNA repair, conjugation and homologous recombination at extremely high temperatures. Genetics 152:1407-1415.
48. Stetter, K. 2006. History of discovery of the first hyperthermophiles. Extremophiles 10:357-362.
49. Stohl, E. A., and H. S. Seifert. 2006. Neisseria gonorrhoeae DNA recombination and repair enzymes protect against oxidative damage caused by hydrogen peroxide. J. Bacteriol. 188:7645-7651.
50. Turinsky, A. L., A. C. Ah-Seng, P. M. Gordon, J. N. Stromer, M. L. Taschuk, E. W. Xu, and C. W. Sensen. 2005. Bioinformatics visualization and integration with open standards: the Bluejay genomic browser. In Silico Biol. 5:187-198.
51. Williams, E., T. M. Lowe, J. Savas, and J. Diruggiero. 2007. Microarray analysis of the hyperthermophilic archaeon Pyrococcus furiosus exposed to gamma irradiation. Extremophilcs 11:19-29.
52. Wood, E. R., F. Ghane, and D. W. Grogan. 1997. Genetic responses of the thermophilic archaeon Sulfolobus acidocaldarius to short-wavelength UV light. J. Bacteriol. 179:5693-5698.