Eukaryotic DNA Polymerases: Proposal for a Revised Nomenclature

Journal of Biological Chemistry

Volumn 276, Issue 47, 2001, Pages 43487-43490

  Burgers, Peter M J ^a   Koonin, Eugene V ^b   Bruford, Elspeth ^c   Blanco, Luis ^d   Burtis, Kenneth C ^e   Christman, Michael F ^f   Copeland, William C ^g   Friedberg, Errol C ^h   Hanaoka, Fumio ⁱ   Hinkle, David C ^j   Lawrence, Christopher W ^k   Nakanishi, Makoto ^l   Ohmori, Haruo ^m   Prakash, Louise ⁿ   Prakash, Satya ⁿ   Reynaud, Claude Agnes ^o   Sugino, Akio ^p   Todo, Takeshi ^m   Wang, Zhigang ^q   Weill, Jean Claude ^o   Woodgate, Roger ^r   more..

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b NATIONAL INSTITUTES OF HEALTH   (United States)

^c UNIVERSITY COLLEGE LONDON   (United Kingdom)

^d UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

^e UNIVERSITY OF CALIFORNIA   (United States)

^f UNIVERSITY OF VIRGINIA   (United States)

^g NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES   (United States)

^h UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

ⁱ OSAKA UNIVERSITY   (Japan)

^j UNIVERSITY OF ROCHESTER   (United States)

^k UNIVERSITY OF ROCHESTER SCHOOL OF MEDICINE AND DENTISTRY   (United States)

^l NAGOYA CITY UNIV MEDICAL SCHOOL   (Japan)

^m KYOTO UNIVERSITY   (Japan)

ⁿ UNIVERSITY OF TEXAS MEDICAL BRANCH   (United States)

^o UNIVERSITÉ PARIS DESCARTES   (France)

^p OSAKA UNIVERSITY   (Japan)

^q UNIVERSITY OF KENTUCKY   (United States)

^r EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH AND HUMAN DEVELOPMENT   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

DNA POLYMERASE; DNA DIRECTED DNA POLYMERASE;

ANIMAL CELL; DNA DAMAGE; DNA REPLICATION; EUKARYOTIC CELL; EXCISION REPAIR; GENE ISOLATION; HUMAN GENOME; MULTIGENE FAMILY; NOMENCLATURE; NONHUMAN; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SHORT SURVEY; ANIMAL; ENZYMOLOGY; HUMAN; REVIEW;

ANIMALIA; EUKARYOTA;

ANIMALS; DNA-DIRECTED DNA POLYMERASE; EUKARYOTIC CELLS; HUMANS; TERMINOLOGY;

EID: 0035941229     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.R100056200     Document Type: Short Survey

References (63)

1. Weissbach, A., Baltimore, D., Bollum, F., Gallo, R., and Korn, D. (1975) Science 190, 401-402
2. Burgers, P. M. J., Bambara, R. A., Campbell, J. L., Chang, L. M. S., Downey, K. M., Hubscher, U., Lee, M. Y. W. T., Linn, S. M., So, A. G., and Spadari, S. (1990) Eur. J. Biochem. 191, 617-618
3. Sharief, F. S., Vojta, P. J., Ropp, P. A., and Copeland, W. C. (1999) Genomics 59, 90-96
4. Aoufouchi, S., Flatter, E., Dahan, A., Faili, A., Bertocci, B., Storck, S., Delbos, F., Cocea, L., Gupta, N., Weill, J. C., and Reynaud, C. A. (2000) Nucleic Acids Res. 28, 3684-3693
5. Dominguez, O., Ruiz, J. F., Lain de Lera, T., Garcia-Diaz, M., Gonzalez, M. A., Kirchhoff, T., Martinez, A. C., Bernad, A., and Blanco, L. (2000) EMBO J. 19, 1731-1742
6. Garcia-Diaz, M., Dominguez, O., Lopez-Fernandez, L. A., de Lera, L. T., Saniger, M. L., Ruiz, J. F., Parraga, M., Garcia-Ortiz, M. J., Kirchhoff, T., del Mazo, J., Bernad, A., and Blanco, L. (2000) J. Mol. Biol. 301, 851-867
7. Tang, M., Shen, X., Frank, E. G., O'Donnell, M., Woodgate, R., and Goodman, M. F. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 8919-8924
8. Reuven, N. B., Arad, G., Maor-Shoshani, A., and Livneh, Z. (1999) J. Biol. Chem. 274, 31763-31766
9. Wagner, J., Gruz, P., Kim, S. R., Yamada, M., Matsui, K., Fuchs, R. P., and Nohmi, T. (1999) Mol. Cell 4, 281-286
10. Johnson, R. E., Prakash, S., and Prakash, L. (1999) Science 283, 1001-1004
11. Masutani, C., Kusumoto, R., Yamada, A., Dohmae, N., Yokoi, M., Yuasa, M., Araki, M., Iwai, S., Takio, K., and Hanaoka, F. (1999) Nature 399, 700-704
12. Aravind, L., and Koonin, E. V. (1998) Nucleic Acids Res. 26, 3746-3752
13. Aravind, L., and Koonin, E. V. (1999) Nucleic Acids Res. 27, 1609-1618
14. Wang, Z., Castaño, I. B., De Las Peñas, A., Adams, C., and Christman, M. F. (2000) Science 289, 774-779
15. Nagasawa, K., Kitamura, K., Yasui, A., Nimura, Y., Ikeda, K., Hirai, M., Matsukage, A., and Nakanishi, M. (2000) J. Biol. Chem. 275, 31233-31238
16. Burtis, K. C., and Harris, P. V. (1997) Curr. Biol. 7, R743-R744
17. Harris, P. V. (1999) Molecular cloning and expression of Drosophila mus308 and human POLQ, a new class of eukaryotic DNA polymerase with potential involvement in the repair of DNA interstrand crosslinks. Ph.D. thesis, University of California, Davis
18. Johnson, R. E., Prakash, S., and Prakash, L. (2000) Proc. Natl. Acad. Sci. U. S. A. 97, 3838-3843
19. Ohashi, E., Ogi, T., Kusumoto, R., Iwai, S., Masutani, C., Hanaoka, F., and Ohmori, H. (2000) Genes Dev. 14, 1589-1594
20. Ohashi, E., Bebenek, K., Matsuda, T., Feaver, W. J., Gerlach, V. L., Friedberg, E. C., Ohmori, H., and Kunkel, T. A. (2000) J. Biol. Chem. 275, 39678-39684
21. Zhang, Y., Yuan, F., Wu, X., Wang, M., Rechkoblit, O., Taylor, J. S., Geacintov, N. E., and Wang, Z. (2000) Nucleic Acids Res. 28, 4138-4146
22. Wang, S. W., Toda, T., MacCallum, R., Harris, A. L., and Norbury, C. (2000) Mol. Cell. Biol. 20, 3234-3244
23. Nelson, J. R., Lawrence, C. W., and Hinkle, D. C. (1996) Nature 382, 729-731
24. Ohmori, H., Friedberg, E., Fuchs, R., Goodman, M., Hanaoka, F., Hinkle, D., Kunkel, T., Lawrence, C., Livneh, Z., Nohmi, T., Prakash, L., Prakash, S., Todo, T., Walker, G., Wang, Z., and Woodgate, R. (2001) Mol. Cell 8, 7-8
25. Ito, J., and Braithwaite, D. K. (1991) Nucleic Acids Res. 19, 4045-4057
26. Braithwaite, D. K., and Ito, J. (1993) Nucleic Acids Res. 21, 787-802
27. Cann, I. K., and Ishino, Y. (1999) Genetics 152, 1249-1267
28. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D. J. (1997) Nucleic Acids Res. 25, 3389-3402
29. Leipe, D. D., Aravind, L., and Koonin, E. V. (1999) Nucleic Acids Res. 27, 3389-3401
30. Sugino, A. (1995) Trends Biochem. Sci. 20, 319-323
31. Lawrence, C. W., and Hinkle, D. C. (1996) Cancer Surv. 28, 21-31
32. Hindges, R., and Hubscher, U. (1997) Biol. Chem. 378, 345-362
33. Burgers, P. M. (1998) Chromosoma 107, 218-227
34. Lawrence, C. W., and Maher, V. M. (2001) Philos. Trans. R. Soc. Lond. B Biol. Sci. 356, 41-46
35. Matsumoto, Y., and Kim, K. (1995) Science 269, 699-702
36. Garcia-Diaz, M., Bebenek, K., Kunkel, T. A., and Blanco, L. (2001) J. Biol. Chem. 276, 34659-34663
37. Reynaud, C. A., Frey, S., Aoufouchi, S., Faili, A., Bertocci, B., Dahan, A., Flatter, E., Delbos, F., Storck, S., Zober, C., and Weill, J. C. (2001) Philos. Trans. R. Soc. Lond. B Biol. Sci. 356, 91-97
38. Ruiz, J. F., Dominguez, O., Lain de Lera, T., Garcia-Diaz, M., Bernad, A., and Blanco, L. (2001) Philos. Trans. R. Soc. Lond. B Biol. Sci. 356, 99-109
39. Klungland, A., and Lindahl, T. (1997) EMBO J. 16, 3341-3348
40. Kim, K., Biade, S., and Matsumoto, Y. (1998) J. Biol. Chem. 273, 8842-8848
41. Prasad, R., Widen, S. G., Singhal, R. K., Watkins, J., Prakash, L., and Wilson, S. H. (1993) Nucleic Acids Res. 21, 5301-5307
42. Leem, S. H., Ropp, P. A., and Sugino, A. (1994) Nucleic Acids Res. 22, 3011-3017
43. Friedberg, E. C., and Gerlach, V. L. (1999) Cell 98, 413-416
44. Woodgate, R. (1999) Genes Dev. 13, 2191-2195
45. Johnson, R. E., Washington, M. T., Prakash, S., and Prakash, L. (1999) Proc. Natl. Acad. Sci. U. S. A. 96, 12224-12226
46. Goodman, M. F., and Tippin, B. (2000) Curr. Opin. Genet. Dev. 10, 162-168
47. Hubscher, U., Nasheuer, H. P., and Syvaoja, J. E. (2000) Trends Biochem. Sci. 25, 143-147
48. Livneh, Z. (2001) J. Biol. Chem. 276, 25639-25642
49. McDonald, J. P., Tissier, A., Frank, E. G., Iwai, S., Hanaoka, F., and Woodgate, R. (2001) Philos. Trans. R. Soc. Lond. B Biol. Sci. 356, 53-60
50. Johnson, R. E., Washington, M. T., Prakash, S., and Prakash, L. (2000) J. Biol. Chem. 275, 7447-7450
51. Tissier, A., Frank, E. G., McDonald, J. P., Iwai, S., Hanaoka, F., and Woodgate, R. (2000) EMBO J. 19, 5259-5266
52. Johnson, R. E., Washington, M. T., Haracska, L., Prakash, S., and Prakash, L. (2000) Nature 406, 1015-1019
53. Masutani, C., Kusumoto, R., Iwai, S., and Hanaoka, F. (2000) EMBO J. 19, 3100-3109
54. Vaisman, A., Masutani, C., Hanaoka, F., and Chaney, S. G. (2000) Biochemistry 39, 4575-4580
55. Yuan, F., Zhang, Y., Rajpal, D. K., Wu, X., Guo, D., Wang, M., Taylor, J. S., and Wang, Z. (2000) J. Biol. Chem. 275, 8233-8239
56. Tissier, A., McDonald, J. P., Frank, E. G., and Woodgate, R. (2000) Genes Dev. 14, 1642-1650
57. Zhang, Y., Yuan, F., Wu, X., and Wang, Z. (2000) Mol. Cell. Biol. 20, 7099-7108
58. Bebenek, K., Tissier, A., Frank, E. G., McDonald, J. P., Prasad, R., Wilson, S. H., Woodgate, R., and Kunkel, T. A. (2001) Science 291, 2156-2159
59. Harris, P. V., Mazina, O. M., Leonhardt, E. A., Case, R. B., Boyd, J. B., and Burtis, K. C. (1996) Mol. Cell. Biol. 16, 5764-5771
60. Sekelsky, J. J., Burtis, K. C., and Hawley, R. S. (1998) Genetics 148, 1587-1598
61. Oshige, M., Aoyagi, N. Harris, P. V., Burtis, K. C., and Sakaguchi, K. (1999) Mutat. Res. 433, 183-192
62. Tatusov, R. L., Koonin, E. V., and Lipman, D. J. (1997) Science 278, 631-637
63. Gerlach, V. L., Feaver, W. J., Fischhaber, P. L., Richardson, J. A., Aravind, L., Koonin, E. V., Bebenek, K., Kunkel, T. A., and Friedberg, E. C. (2000) Cold Spring Harbor Symp. Quant. Biol. 65, 41-49