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Volumn 2, Issue NOV, 2011, Pages

Is the genetic landscape of the deep subsurface biosphere affected by viruses?

Author keywords

Deep subsurface biosphere; Hydrothermal vents; Microbial evolution; Viral ecology

Indexed keywords


EID: 84864596942     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2011.00219     Document Type: Article
Times cited : (47)

References (129)
  • 1
    • 4444274584 scopus 로고    scopus 로고
    • An SOS response induced by high pressure in Escherichia coli
    • Aertsen, A., Van Houdt, R., Vanoirbeek, K., and Michiels, C. W. (2004). An SOS response induced by high pressure in Escherichia coli. J. Bacteriol. 186, 6133-6141.
    • (2004) J. Bacteriol. , vol.186 , pp. 6133-6141
    • Aertsen, A.1    Van Houdt, R.2    Vanoirbeek, K.3    Michiels, C.W.4
  • 2
    • 0035093350 scopus 로고    scopus 로고
    • Energetics of overall metabolic reactions of thermophilic and hyper-thermophilic archaea and bacteria
    • Amend, J. P., and Shock, E. L. (2001). Energetics of overall metabolic reactions of thermophilic and hyper-thermophilic archaea and bacteria. FEMS Microbiol. Rev. 25, 175-243.
    • (2001) FEMS Microbiol. Rev. , vol.25 , pp. 175-243
    • Amend, J.P.1    Shock, E.L.2
  • 3
    • 79960468271 scopus 로고    scopus 로고
    • Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage
    • Anderson, R. E., Brazelton, W. J., and Baross, J. A. (2011). Using CRISPRs as a metagenomic tool to identify microbial hosts of a diffuse flow hydrothermal vent viral assemblage. FEMS Microbiol. Ecol. 77, 120-133
    • (2011) FEMS Microbiol. Ecol. , vol.77 , pp. 120-133
    • Anderson, R.E.1    Brazelton, W.J.2    Baross, J.A.3
  • 5
    • 0001603062 scopus 로고
    • Submarine hydrothermal vents and associated gradient environments as sites for the origin and evolution of life
    • Baross, J. A., and Hoffman, S. E. (1985). Submarine hydrothermal vents and associated gradient environments as sites for the origin and evolution of life. Orig. Life Evol. Biosph. 15, 327-345.
    • (1985) Orig. Life Evol. Biosph. , vol.15 , pp. 327-345
    • Baross, J.A.1    Hoffman, S.E.2
  • 9
    • 48749117805 scopus 로고    scopus 로고
    • Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment
    • Biddle, J. F., Fitz-Gibbon, S., Schuster, S. C., Brenchley, J. E., and House, C. H. (2008). Metagenomic signatures of the Peru Margin subseafloor biosphere show a genetically distinct environment. Proc. Natl. Acad. Sci. U.S.A. 105, 10583-10588.
    • (2008) Proc. Natl. Acad. Sci. U. S. A. , vol.105 , pp. 10583-10588
    • Biddle, J.F.1    Fitz-Gibbon, S.2    Schuster, S.C.3    Brenchley, J.E.4    House, C.H.5
  • 10
    • 44249083757 scopus 로고    scopus 로고
    • Occurrence and expression of gene transfer agent (GTA) genes in marine bacterioplankton
    • Biers, E. J., Wang, K., Pennington, C., Belas, R., Chen, F., and Moran, M. A. (2008). Occurrence and expression of gene transfer agent (GTA) genes in marine bacterioplankton. Appl. Environ. Microbiol. 74, 2933-2939.
    • (2008) Appl. Environ. Microbiol. , vol.74 , pp. 2933-2939
    • Biers, E.J.1    Wang, K.2    Pennington, C.3    Belas, R.4    Chen, F.5    Moran, M.A.6
  • 11
    • 0342973218 scopus 로고    scopus 로고
    • Subsurface viruses and bacteria in Holocene/Late Pleistocene sediments of Saanich Inlet, BC: ODP Holes 1033B and 1034B, Leg 169S.
    • Bird, D. F., Juniper, S. K., Ricciardi-Regault, M., Martineu, P., Prairie, Y. T., and Calvert, S. E. (2001). Subsurface viruses and bacteria in Holocene/Late Pleistocene sediments of Saanich Inlet, BC: ODP Holes 1033B and 1034B, Leg 169S. Mar. Geol. 174, 227-239.
    • (2001) Mar. Geol. , vol.174 , pp. 227-239
    • Bird, D.F.1    Juniper, S.K.2    Ricciardi-Regault, M.3    Martineu, P.4    Prairie, Y.T.5    Calvert, S.E.6
  • 12
    • 23844505202 scopus 로고    scopus 로고
    • Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
    • Bolotin, A., Quinquis, B., Sorokin, A., and Ehrlich, S. D. (2005). Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology 151, 2551-2561.
    • (2005) Microbiology , vol.151 , pp. 2551-2561
    • Bolotin, A.1    Quinquis, B.2    Sorokin, A.3    Ehrlich, S.D.4
  • 13
    • 33749431828 scopus 로고    scopus 로고
    • Prophage finder: a prophage loci prediction tool for prokaryotic genome sequences
    • Bose, M., and Barber, R. (2006). Prophage finder: a prophage loci prediction tool for prokaryotic genome sequences. In Silico Biol. 6, 0020.
    • (2006) In Silico Biol , vol.6 , pp. 0020
    • Bose, M.1    Barber, R.2
  • 14
    • 72649088719 scopus 로고    scopus 로고
    • Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm
    • Brazelton, W. J., and Baross, J. A. (2009). Abundant transposases encoded by the metagenome of a hydrothermal chimney biofilm. ISME J. 3, 1420-1424.
    • (2009) ISME J , vol.3 , pp. 1420-1424
    • Brazelton, W.J.1    Baross, J.A.2
  • 17
    • 20344382957 scopus 로고    scopus 로고
    • Here a virus, there a virus, everywhere the same virus?
    • Breitbart, M., and Rohwer, F. (2005). Here a virus, there a virus, everywhere the same virus? Trends Microbiol. 13, 278-284.
    • (2005) Trends Microbiol , vol.13 , pp. 278-284
    • Breitbart, M.1    Rohwer, F.2
  • 20
    • 0035489758 scopus 로고    scopus 로고
    • Growth and phylogenetic properties of novel bacteria belonging to the epsilon subdivision of the proteobacteria enriched from Alvinella pompejana and deep-sea hydrothermal vents
    • Campbell, B. J., Jeanthon, C., Kostka, J. E., Luther, G. W. III, and Cary, S. C. (2001). Growth and phylogenetic properties of novel bacteria belonging to the epsilon subdivision of the proteobacteria enriched from Alvinella pompejana and deep-sea hydrothermal vents. Appl. Environ. Microbiol. 67, 4566-4572.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4566-4572
    • Campbell, B.J.1    Jeanthon, C.2    Kostka, J.E.3    Luther III, G.W.4    Cary, S.C.5
  • 21
    • 0001185532 scopus 로고
    • Prokaryotes and eukaryotes: strategies and successes
    • Carlile, M. (1982). Prokaryotes and eukaryotes: strategies and successes. Trends Biochem. Sci. 7, 128-130.
    • (1982) Trends Biochem. Sci. , vol.7 , pp. 128-130
    • Carlile, M.1
  • 28
    • 0034327406 scopus 로고    scopus 로고
    • Structural and mechanistic conservation in DNA ligases
    • Doherty, A. J., and Suh, S. W. (2000). Structural and mechanistic conservation in DNA ligases. Nucleic Acids Res. 28, 4051-4058.
    • (2000) Nucleic Acids Res , vol.28 , pp. 4051-4058
    • Doherty, A.J.1    Suh, S.W.2
  • 29
    • 23944436358 scopus 로고    scopus 로고
    • Geomicrobiology in oceanography: microbe-mineral interactions at and below the seafloor
    • Edwards, K. J., Bach, W., and McCollom, T. M. (2005). Geomicrobiology in oceanography: microbe-mineral interactions at and below the seafloor. Trends Microbiol. 13, 449-456.
    • (2005) Trends Microbiol , vol.13 , pp. 449-456
    • Edwards, K.J.1    Bach, W.2    McCollom, T.M.3
  • 30
    • 80052968809 scopus 로고    scopus 로고
    • Under the sea: microbial life in volcanic oceanic crust
    • Edwards,K.J.,Wheat,C.G., and Sylvan, J. B. (2011). Under the sea: microbial life in volcanic oceanic crust. Nat. Rev. Microbiol. 9, 703-712.
    • (2011) Nat. Rev. Microbiol. , vol.9 , pp. 703-712
    • Edwards, K.J.1    Wheat, C.G.2    Sylvan, J.B.3
  • 33
    • 0031555475 scopus 로고    scopus 로고
    • The universal stress protein, UspA, of Escherichia coli is phosphorylated in response to stasis
    • Freestone, P., Nyström, T., Trinei, M., and Norris, V. (1997). The universal stress protein, UspA, of Escherichia coli is phosphorylated in response to stasis. J. Mol. Biol. 274, 318-324.
    • (1997) J. Mol. Biol. , vol.274 , pp. 318-324
    • Freestone, P.1    Nyström, T.2    Trinei, M.3    Norris, V.4
  • 35
    • 33846551381 scopus 로고    scopus 로고
    • Biology's next revolution
    • Goldenfeld, N., and Woese, C. (2007). Biology's next revolution. Nature 445, 369.
    • (2007) Nature , vol.445 , pp. 369
    • Goldenfeld, N.1    Woese, C.2
  • 36
    • 34547579396 scopus 로고    scopus 로고
    • CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
    • Grissa, I., Vergnaud, G., and Pourcel, C. (2007a). CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res. 35, W52-W57.
    • (2007) Nucleic Acids Res , vol.35
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 37
    • 34250662138 scopus 로고    scopus 로고
    • The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats
    • doi: 10.1186/1471-2105-8-172
    • Grissa, I., Vergnaud, G., and Pourcel, C. (2007b). The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats. BMC Bioinformatics 8: 172. doi: 10.1186/1471-2105-8-172
    • (2007) BMC Bioinformatics , vol.8 , pp. 172
    • Grissa, I.1    Vergnaud, G.2    Pourcel, C.3
  • 39
    • 34248400310 scopus 로고    scopus 로고
    • A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes
    • doi:10.1371/journal.pcbi.0010060
    • Haft, D. H., Selengut, J., Mongodin, E. F., and Nelson, K. E. (2005). A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes. PLoS Comput. Biol. 1, e60. doi:10.1371/journal.pcbi.0010060
    • (2005) PLoS Comput. Biol. , vol.1
    • Haft, D.H.1    Selengut, J.2    Mongodin, E.F.3    Nelson, K.E.4
  • 42
    • 33746619610 scopus 로고    scopus 로고
    • The BarA-UvrY two-component system regulates virulence in avian pathogenic Escherichia coli O78:K80:H9
    • Herren, C. D., Mitra, A., Palaniyandi, S. K., Coleman, A., Elankumaran, S., and Mukhopadhyay, S. (2006). The BarA-UvrY two-component system regulates virulence in avian pathogenic Escherichia coli O78:K80:H9. Infect. Immun. 74, 4900-4909.
    • (2006) Infect. Immun. , vol.74 , pp. 4900-4909
    • Herren, C.D.1    Mitra, A.2    Palaniyandi, S.K.3    Coleman, A.4    Elankumaran, S.5    Mukhopadhyay, S.6
  • 44
    • 74249095519 scopus 로고    scopus 로고
    • CRISPR/Cas, the immune system of bacteria and archaea
    • Hovarth, P., and Barrangou, R. (2010). CRISPR/Cas, the immune system of bacteria and archaea. Science 327, 167-170.
    • (2010) Science , vol.327 , pp. 167-170
    • Hovarth, P.1    Barrangou, R.2
  • 45
    • 0037375056 scopus 로고    scopus 로고
    • Bacterial diversity in a subseafloor habitat following a deep-sea volcanic eruption
    • Huber, J. A., Butterfield, D. A., and Baross, J. A. (2003). Bacterial diversity in a subseafloor habitat following a deep-sea volcanic eruption. FEMS Microbiol. Ecol. 43, 393-309.
    • (2003) FEMS Microbiol. Ecol. , vol.43 , pp. 393-309
    • Huber, J.A.1    Butterfield, D.A.2    Baross, J.A.3
  • 47
    • 0345328152 scopus 로고    scopus 로고
    • Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing εproteobacterium isolated from hydrothermal sediments in the Mid-Okinawa trough
    • Inagaki, F., Takai, K., Kobayashi, H., Nealson, K. H., and Horikoshi, K. (2003). Sulfurimonas autotrophica gen. nov., sp. nov., a novel sulfur-oxidizing εproteobacterium isolated from hydrothermal sediments in the Mid-Okinawa trough. Int. J. Syst. Evol. Microbiol. 53, 1801-1805.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 1801-1805
    • Inagaki, F.1    Takai, K.2    Kobayashi, H.3    Nealson, K.H.4    Horikoshi, K.5
  • 48
    • 57349122987 scopus 로고    scopus 로고
    • Comparative genomics of two eco-types of the marine planktonic copi-otroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter
    • Ivars-Martinez, E., Martin-Cuadrado, A.-B., D'Auria, G., Mira, A., Ferriera, S., Johnson, J., Friedman, R., and Rodriguez-Valera, F. (2008). Comparative genomics of two eco-types of the marine planktonic copiotroph Alteromonas macleodii suggests alternative lifestyles associated with different kinds of particulate organic matter. ISME J. 2, 1194-1212.
    • (2008) ISME J , vol.2 , pp. 1194-1212
    • Ivars-Martinez, E.1    Martin-Cuadrado, A.-B.2    D'Auria, G.3    Mira, A.4    Ferriera, S.5    Johnson, J.6    Friedman, R.7    Rodriguez-Valera, F.8
  • 49
    • 0000738478 scopus 로고
    • Morphological survey of microbial mats near deep-sea thermal vents
    • Jannasch, H. W., and Wirsen, C. O. (1981). Morphological survey of microbial mats near deep-sea thermal vents. Appl. Environ. Microbiol. 41, 528-538.
    • (1981) Appl. Environ. Microbiol. , vol.41 , pp. 528-538
    • Jannasch, H.W.1    Wirsen, C.O.2
  • 50
    • 0031902076 scopus 로고    scopus 로고
    • Gene transfer by transduction in the marine environment
    • Jiang, S. C., and Paul, J. H. (1998). Gene transfer by transduction in the marine environment. Appl. Environ. Microbiol. 64, 2780-2787.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2780-2787
    • Jiang, S.C.1    Paul, J.H.2
  • 52
    • 0037640006 scopus 로고    scopus 로고
    • Thermococcus gammatolerans sp. nov., a hyperthermophilic archaeon from a deep-sea hydrothermal vent that resists ionizing radiation
    • Jolivet, E., L'Haridon, S., Corre, E., Forterre, P., and Prieur, D. (2003). Thermococcus gammatolerans sp. nov., a hyperthermophilic archaeon from a deep-sea hydrothermal vent that resists ionizing radiation. Int. J. Syst. Evol. Microbiol. 53, 847-851.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 847-851
    • Jolivet, E.1    L'Haridon, S.2    Corre, E.3    Forterre, P.4    Prieur, D.5
  • 53
    • 0021070752 scopus 로고
    • Methanococcus jannaschii sp. nov., an extremely thermophilic methanogen from a submarine hydrothermal vent
    • Jones, W. J., Leigh, J. A., Mayer, F., Woese, C. R., and Wolfe, R. S. (1983). Methanococcus jannaschii sp. nov., an extremely thermophilic methanogen from a submarine hydrothermal vent. Arch. Microbiol. 136, 254-261.
    • (1983) Arch. Microbiol. , vol.136 , pp. 254-261
    • Jones, W.J.1    Leigh, J.A.2    Mayer, F.3    Woese, C.R.4    Wolfe, R.S.5
  • 55
    • 0028976429 scopus 로고
    • Isolation and properties of barophilic and barotolerant bacteria from deep-sea mud samples
    • Kato, C., Sato, T., and Horikoshi, K. (1995). Isolation and properties of barophilic and barotolerant bacteria from deep-sea mud samples. Bio-divers. Conserv. 4, 1-9.
    • (1995) Bio-divers. Conserv. , vol.4 , pp. 1-9
    • Kato, C.1    Sato, T.2    Horikoshi, K.3
  • 56
    • 78349309251 scopus 로고    scopus 로고
    • Enumeration of viruses and prokaryotes in deep-sea sediments and cold seeps of the Gulf of Mexico
    • Kellogg, C. A. (2010). Enumeration of viruses and prokaryotes in deep-sea sediments and cold seeps of the Gulf of Mexico. Deep Sea Res. Part 2 Top. Stud. Oceanogr. 57, 2002-2007.
    • (2010) Deep Sea Res. Part 2 Top. Stud. Oceanogr. , vol.57 , pp. 2002-2007
    • Kellogg, C.A.1
  • 57
  • 58
    • 43449125894 scopus 로고    scopus 로고
    • Viruses in granitic groundwater from 69 to 450 m depth of the Äspö hard rock laboratory
    • Kyle, J. E., Eydal, H. S. C., Ferris, F. G., and Pedersen, K. (2008). Viruses in granitic groundwater from 69 to 450 m depth of the Äspö hard rock laboratory, Sweden. ISME J. 2, 571-574.
    • (2008) Sweden. ISME J. , vol.2 , pp. 571-574
    • Kyle, J.E.1    Eydal, H.S.C.2    Ferris, F.G.3    Pedersen, K.4
  • 60
    • 0034681148 scopus 로고    scopus 로고
    • Genetic analysis of a bacterial genetic exchange element: the gene transfer agent of Rhodobacter capsulatus
    • Lang, A. S., and Beatty, J. T. (2000). Genetic analysis of a bacterial genetic exchange element: the gene transfer agent of Rhodobacter capsulatus. Proc. Natl. Acad. Sci. U.S.A. 97, 859-864.
    • (2000) Proc. Natl. Acad. Sci. U. S. A. , vol.97 , pp. 859-864
    • Lang, A.S.1    Beatty, J.T.2
  • 61
    • 26444473132 scopus 로고    scopus 로고
    • Thermosediminibacter oceani gen. nov., sp. nov. and Thermosediminibacter litoriperuensis sp. nov., new anaerobic thermophilic bacteria isolated from Peru Margin
    • Lee, Y.-J., Wagner, I. D., Brice, M. E., Kevbrin, V. V., Mills, G. L., Romanek, C. S., and Wiegel, J. (2005). Thermosediminibacter oceani gen. nov., sp. nov. and Thermosediminibacter litoriperuensis sp. nov., new anaerobic thermophilic bacteria isolated from Peru Margin. Extremophiles 9, 375-383.
    • (2005) Extremophiles , vol.9 , pp. 375-383
    • Lee, Y.-J.1    Wagner, I.D.2    Brice, M.E.3    Kevbrin, V.V.4    Mills, G.L.5    Romanek, C.S.6    Wiegel, J.7
  • 62
    • 0016273515 scopus 로고
    • DNA ligase: structure, mechanism and function.
    • Lehnman, I. R. (1974). DNA ligase: structure, mechanism, and function. Science 186, 790-797.
    • (1974) Science , vol.186 , pp. 790-797
    • Lehnman, I.R.1
  • 64
    • 0001835935 scopus 로고
    • "Coevolution in bacteria and their viruses and plasmids," in Coevolution, eds D. J. Futuyma and M. Slatkin (Sunderland
    • Levin, B. R., and Lenski, R. E. (1983). "Coevolution in bacteria and their viruses and plasmids," in Coevolution, eds D. J. Futuyma and M. Slatkin (Sunderland, MA: Sinauer Associates), 99-127.
    • (1983) MA: Sinauer Associates) , pp. 99-127
    • Levin, B.R.1    Lenski, R.E.2
  • 65
    • 27744480467 scopus 로고    scopus 로고
    • Photosynthesis genes in marine viruses yield proteins during host infection
    • Lindell, D., Jaffe, J. D., Johnson, Z. I., Church, G. M., and Chisholm, S. W. (2005). Photosynthesis genes in marine viruses yield proteins during host infection. Nature 438, 86-89.
    • (2005) Nature , vol.438 , pp. 86-89
    • Lindell, D.1    Jaffe, J.D.2    Johnson, Z.I.3    Church, G.M.4    Chisholm, S.W.5
  • 67
    • 0035910123 scopus 로고    scopus 로고
    • Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halo-tolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge
    • Lu, J., Nogi, Y., and Takami, H. (2001). Oceanobacillus iheyensis gen. nov., sp. nov., a deep-sea extremely halo-tolerant and alkaliphilic species isolated from a depth of 1050 m on the Iheya Ridge. FEMS Microbiol. Lett. 205, 291-297.
    • (2001) FEMS Microbiol. Lett. , vol.205 , pp. 291-297
    • Lu, J.1    Nogi, Y.2    Takami, H.3
  • 68
    • 0037383069 scopus 로고    scopus 로고
    • Potential genomic determinants of hyperthermophily
    • Makarova, K. S., Wolf, Y. I., and Koonin, E. V. (2003). Potential genomic determinants of hyperthermophily. Trends Genet. 19, 172-176.
    • (2003) Trends Genet , vol.19 , pp. 172-176
    • Makarova, K.S.1    Wolf, Y.I.2    Koonin, E.V.3
  • 69
    • 42649102000 scopus 로고    scopus 로고
    • Prokaryote diversity and virus abundance in shallow hydrothermal vents of the Mediterranean Sea (Panarea Island) and the Pacific Ocean (North Sulawesi-Indonesia)
    • Manini, E., Luna, G. M., Corinaldesi, C., Zeppilli, D., Bortoluzzi, G., Caramanna, G., Raffa, F., and Danovaro, R. (2008). Prokaryote diversity and virus abundance in shallow hydrothermal vents of the Mediterranean Sea (Panarea Island) and the Pacific Ocean (North Sulawesi-Indonesia). Microb. Ecol. 55, 626-639.
    • (2008) Microb. Ecol. , vol.55 , pp. 626-639
    • Manini, E.1    Luna, G.M.2    Corinaldesi, C.3    Zeppilli, D.4    Bortoluzzi, G.5    Caramanna, G.6    Raffa, F.7    Danovaro, R.8
  • 71
    • 57849137502 scopus 로고    scopus 로고
    • CRISPR interference limits horizontal gene transfer in Staphylococci by targeting DNA
    • Marraffini, L. A., and Sontheimer, E. J. (2008). CRISPR interference limits horizontal gene transfer in Staphylococci by targeting DNA. Science 322, 1843-1845.
    • (2008) Science , vol.322 , pp. 1843-1845
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 72
    • 75749118174 scopus 로고    scopus 로고
    • Self versus non-self discrimination during CRISPR RNA-directed immunity
    • Marraffini, L. A., and Sontheimer, E. J. (2010). Self versus non-self discrimination during CRISPR RNA-directed immunity. Nature 463, 568-571.
    • (2010) Nature , vol.463 , pp. 568-571
    • Marraffini, L.A.1    Sontheimer, E.J.2
  • 73
    • 0032924862 scopus 로고    scopus 로고
    • Thermococcus barophilus sp. nov., a new barophilic and hyperthermophilic archaeon isolated under high hydrostatic pressure from a deep-sea hydrothermal vent
    • Marteinsson, V. T., Birrien, J. L., Reysenbach, A. L., Vernet, M., Marie, D., Gambacorta, A., Messner, P., Sleytr, U. B., and Prieur, D. (1999). Thermococcus barophilus sp. nov., a new barophilic and hyperthermophilic archaeon isolated under high hydrostatic pressure from a deep-sea hydrothermal vent. Int. J. Syst. Bacteriol. 49, 351-359.
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , pp. 351-359
    • Marteinsson, V.T.1    Birrien, J.L.2    Reysenbach, A.L.3    Vernet, M.4    Marie, D.5    Gambacorta, A.6    Messner, P.7    Sleytr, U.B.8    Prieur, D.9
  • 74
    • 24644436925 scopus 로고    scopus 로고
    • Identification of genes of VSH-1, a prophage-like gene transfer agent of Brachyspira hyodysenteriae
    • Matson, E. G., Thompson, M. G., Humphrey, S. B., Zuerner, R. L., and Stanton, T. B. (2005). Identification of genes of VSH-1, a prophage-like gene transfer agent of Brachyspira hyodysenteriae. J. Bacte-riol. 187, 5885-5892.
    • (2005) J. Bacteriol. , vol.187 , pp. 5885-5892
    • Matson, E.G.1    Thompson, M.G.2    Humphrey, S.B.3    Zuerner, R.L.4    Stanton, T.B.5
  • 75
    • 0037203886 scopus 로고    scopus 로고
    • Plankton blooms: lysogeny in marine Synechococcus
    • McDaniel, L., Houchin, L. A., Williamson, S. J., and Paul, J. H. (2002). Plankton blooms: lysogeny in marine Synechococcus. Nature 415, 496.
    • (2002) Nature , vol.415 , pp. 496
    • McDaniel, L.1    Houchin, L.A.2    Williamson, S.J.3    Paul, J.H.4
  • 77
    • 33845719945 scopus 로고    scopus 로고
    • Nitrogen fixation at 92°C by a hydrothermal vent archaeon
    • Mehta, M. P., and Baross, J. A. (2006). Nitrogen fixation at 92°C by a hydrothermal vent archaeon. Science 314, 1783-1786.
    • (2006) Science , vol.314 , pp. 1783-1786
    • Mehta, M.P.1    Baross, J.A.2
  • 79
    • 79956315966 scopus 로고    scopus 로고
    • Viral abundance and activity in the deep sub-seafloor biosphere
    • Middelboe, M., Glud, R. N., and Filippini, M. (2011). Viral abundance and activity in the deep sub-seafloor biosphere. Aquat. Microb. Ecol. 63, 1-8.
    • (2011) Aquat. Microb. Ecol. , vol.63 , pp. 1-8
    • Middelboe, M.1    Glud, R.N.2    Filippini, M.3
  • 81
    • 3342929288 scopus 로고    scopus 로고
    • Genetic organization of the psbAD region in phages infecting marine Synechococcus strains
    • Millard, A., Clokie, M. R. J., Shub, D.A., and Mann, N. H. (2004). Genetic organization of the psbAD region in phages infecting marine Synechococcus strains. Proc. Natl. Acad. Sci. U.S.A. 101, 11007-11012.
    • (2004) Proc. Natl. Acad. Sci. U. S. A. , vol.101 , pp. 11007-11012
    • Millard, A.1    Clokie, M.R.J.2    Shub, D.A.3    Mann, N.H.4
  • 83
    • 16444385662 scopus 로고    scopus 로고
    • Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements
    • Mojica, F. J. M., Díez-Villaseñor, C., García-Martínez, J., and Soria, E. (2005). Intervening sequences of regularly spaced prokary otic repeats derive from foreign genetic elements. J. Mol. Evol. 60, 174-182.
    • (2005) J. Mol. Evol. , vol.60 , pp. 174-182
    • Mojica, F.J.M.1    Díez-Villaseñor, C.2    García-Martínez, J.3    Soria, E.4
  • 84
    • 16844387103 scopus 로고    scopus 로고
    • Nitratiruptor tergarcus gen. nov., sp. nov. and Nitratifractor salsuginis gen. nov., sp. nov., nitrate-reducing chemolithoautotrophs of the Epsilonproteobacteria isolated from a deep-sea hydrothermal system in the Mid-Okinawa trough
    • Nakagawa, S., Takai, K., Inagaki, F., Horikoshi, K., and Sako, Y. (2005). Nitratiruptor tergarcus gen. nov., sp. nov. and Nitratifractor salsuginis gen. nov., sp. nov., nitrate-reducing chemolithoautotrophs of the Epsilonproteobacteria isolated from a deep-sea hydrothermal system in the Mid-Okinawa trough. Int. J. Syst. Evol. Microbiol. 55, 925-933.
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 925-933
    • Nakagawa, S.1    Takai, K.2    Inagaki, F.3    Horikoshi, K.4    Sako, Y.5
  • 86
    • 0031671525 scopus 로고    scopus 로고
    • Photobacterium profundum sp. nov., a new, moderately barophilic bacterial species isolated from a deep-sea sediment
    • Nogi, Y., Masui, N., and Kato, C. (1998). Photobacterium profundum sp. nov., a new, moderately barophilic bacterial species isolated from a deep-sea sediment. Extremophiles 2, 1-8.
    • (1998) Extremophiles , vol.2 , pp. 1-8
    • Nogi, Y.1    Masui, N.2    Kato, C.3
  • 87
    • 0028225734 scopus 로고
    • Expression and role of the universal stress protein, UspA, of Escherichia coli during growth arrest
    • Nyström, T., and Neidhardt, F. C. (1994). Expression and role of the universal stress protein, UspA, of Escherichia coli during growth arrest. Mol. Microbiol. 11, 537-544.
    • (1994) Mol. Microbiol. , vol.11 , pp. 537-544
    • Nyström, T.1    Neidhardt, F.C.2
  • 88
    • 79958053971 scopus 로고    scopus 로고
    • Microbial ecology of the dark ocean above, at, and below the seafloor
    • Orcutt, B. N., Sylvan, J. B., Knab, N. J., and Edwards, K. J. (2011). Microbial ecology of the dark ocean above, at, and below the seafloor. Microbiol. Mol. Biol. Rev. 75, 361-422.
    • (2011) Microbiol. Mol. Biol. Rev. , vol.75 , pp. 361-422
    • Orcutt, B.N.1    Sylvan, J.B.2    Knab, N.J.3    Edwards, K.J.4
  • 89
    • 20844432946 scopus 로고    scopus 로고
    • High abundances of viruses in a deep-sea hydrothermal vent system indicates viral mediated microbial mortality
    • Ortmann,A.C.,andSuttle,C.A. (2005). High abundances of viruses in a deep-sea hydrothermal vent system indicates viral mediated microbial mortality. Deep Sea Res. Part 2 Top. Stud. Oceanogr. 52, 1515-1527.
    • (2005) Deep Sea Res. Part 2 Top. Stud. Oceanogr. , vol.52 , pp. 1515-1527
    • Ortmann, A.C.1    andSuttle, C.A.2
  • 90
    • 34547152687 scopus 로고    scopus 로고
    • Viral abundance, decay, and diversity in the meso-and bathypelagic waters of the North Atlantic
    • Parada, V., Sintes, E., Van Aken, H. M., Weinbauer, M. G., and Herndl, G. J. (2007). Viral abundance, decay, and diversity in the meso-and bathypelagic waters of the North Atlantic. Appl. Environ. Microbiol. 73, 4429-4438.
    • (2007) Appl. Environ. Microbiol. , vol.73 , pp. 4429-4438
    • Parada, V.1    Sintes, E.2    Van Aken, H.M.3    Weinbauer, M.G.4    Herndl, G.J.5
  • 91
    • 44849088966 scopus 로고    scopus 로고
    • Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas?
    • Paul, J. H. (2008). Prophages in marine bacteria: dangerous molecular time bombs or the key to survival in the seas? ISME J. 2, 579-589.
    • (2008) ISME J , vol.2 , pp. 579-589
    • Paul, J.H.1
  • 92
    • 15844390228 scopus 로고    scopus 로고
    • CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies
    • Pourcel, C., Salvignol, G., and Vergnaud, G. (2005). CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology 151, 653-663.
    • (2005) Microbiology , vol.151 , pp. 653-663
    • Pourcel, C.1    Salvignol, G.2    Vergnaud, G.3
  • 94
    • 77950888128 scopus 로고    scopus 로고
    • The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation
    • doi:10.1186/1471-2164-11-247
    • Qin, Q.-L., Zhang, X.-Y., Wang, X.-M., Liu, G.-M., Chen, X.-L., Xie, B.-B., Dang, H.-Y., Zhou, B.-C., Yu, J., and Zhang, Y.-Z. (2010). The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation. BMC Genomics 11, 247. doi:10.1186/1471-2164-11-247
    • (2010) BMC Genomics , vol.11 , pp. 247
    • Qin, Q.-L.1    Zhang, X.-Y.2    Wang, X.-M.3    Liu, G.-M.4    Chen, X.-L.5    Xie, B.-B.6    Dang, H.-Y.7    Zhou, B.-C.8    Yu, J.9    Zhang, Y.-Z.10
  • 96
    • 66149151286 scopus 로고    scopus 로고
    • Viruses manipulate the marine environment
    • Rohwer, F., and Thurber, R. V. (2009). Viruses manipulate the marine environment. Nature 458, 207-212.
    • (2009) Nature , vol.458 , pp. 207-212
    • Rohwer, F.1    Thurber, R.V.2
  • 97
    • 0037217254 scopus 로고    scopus 로고
    • Marinithermus hydrothermalis gen. nov., sp. nov., a strictly aerobic, thermophilic bacterium from a deep-sea hydrothermal vent chimney
    • Sako, Y., Nakagawa, S., Takai, K., and Horikoshi, K. (2003). Marinithermus hydrothermalis gen. nov., sp. nov., a strictly aerobic, thermophilic bacterium from a deep-sea hydrothermal vent chimney. Int. J. Syst. Evol. Microbiol. 53, 59-65.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 59-65
    • Sako, Y.1    Nakagawa, S.2    Takai, K.3    Horikoshi, K.4
  • 100
    • 0038654460 scopus 로고    scopus 로고
    • Incidence and diversity of microorganisms within the walls of an active deep-sea sulfide chimney
    • Schrenk, M. O., Kelley, D. S., Delaney, J. R., and Baross, J. A. (2003). Incidence and diversity of microorganisms within the walls of an active deep-sea sulfide chimney. Appl. Environ. Microbiol. 69, 3580-3592.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 3580-3592
    • Schrenk, M.O.1    Kelley, D.S.2    Delaney, J.R.3    Baross, J.A.4
  • 102
    • 45849123249 scopus 로고    scopus 로고
    • Viral dynamics in a coastal sediment: seasonal pattern, controlling factors and relations to the pelagicbenthic coupling
    • Siem-Jørgensen, M., Glud, R. N., and Middelboe, M. (2008). Viral dynamics in a coastal sediment: seasonal pattern, controlling factors and relations to the pelagicbenthic coupling. Mar. Biol. Res. 4, 165-179.
    • (2008) Mar. Biol. Res. , vol.4 , pp. 165-179
    • Siem-Jørgensen, M.1    Glud, R.N.2    Middelboe, M.3
  • 104
    • 39149142575 scopus 로고    scopus 로고
    • CRISPR a widespread system that provides acquired resistance against phages in bacteria and archaea
    • Sorek, R., Kunin, V., and Hugenholtz, P. (2008). CRISPR a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat. Rev. Microbiol. 6, 181-186.
    • (2008) Nat. Rev. Microbiol. , vol.6 , pp. 181-186
    • Sorek, R.1    Kunin, V.2    Hugenholtz, P.3
  • 105
    • 34347250859 scopus 로고    scopus 로고
    • Prophage-like gene transfer agents-Novel mechanisms of gene exchange for Methanococcus, Desulfovibrio, Brachyspira, and Rhodobacter species
    • Stanton, T. B. (2007). Prophage-like gene transfer agents-Novel mechanisms of gene exchange for Methanococcus, Desulfovibrio, Brachyspira, and Rhodobacter species. Anaerobe 13, 43-49.
    • (2007) Anaerobe , vol.13 , pp. 43-49
    • Stanton, T.B.1
  • 106
    • 79958021198 scopus 로고    scopus 로고
    • Analysis of a viral metagenomic library from 200 m depth in Monterey Bay California constructed by direct shotgun cloning
    • Steward, G. F., and Preston, C. M. (2011). Analysis of a viral metagenomic library from 200 m depth in Monterey Bay, California constructed by direct shotgun cloning. Virol. J. 8, 287.
    • (2011) Virol. J. , vol.8 , pp. 287
    • Steward, G.F.1    Preston, C.M.2
  • 107
    • 21344461027 scopus 로고    scopus 로고
    • Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations
    • doi:10.1371/journal.pbio.0030144
    • Sullivan, M. B., Coleman, M. L.,Weigele, P., Rohwer, F., and Chisholm, S. W. (2005). Three Prochlorococcus cyanophage genomes: signature features and ecological interpretations. PLoS Biol. 3, e144. doi:10.1371/journal.pbio.0030144
    • (2005) PLoS Biol , vol.3
    • Sullivan, M.B.1    Coleman, M.L.2    Weigele, P.3    Rohwer, F.4    Chisholm, S.W.5
  • 109
    • 25144506135 scopus 로고    scopus 로고
    • Viruses in the sea
    • Suttle, C. A. (2005). Viruses in the sea. Nature 437, 356-361.
    • (2005) Nature , vol.437 , pp. 356-361
    • Suttle, C.A.1
  • 110
    • 0036022415 scopus 로고    scopus 로고
    • Methanothermococcus okinawensis sp. nov., a thermophilic, methane-producing archaeon isolated from a Western Pacific deep-sea hydrothermal vent system
    • Takai, K., Inoue, A., and Horikoshi, K. (2002). Methanothermococcus okinawensis sp. nov., a thermophilic, methane-producing archaeon isolated from a Western Pacific deep-sea hydrothermal vent system. Int. J. Syst. Evol. Microbiol. 52, 1089-1095.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 1089-1095
    • Takai, K.1    Inoue, A.2    Horikoshi, K.3
  • 111
    • 0037872700 scopus 로고    scopus 로고
    • Deferribacter desulfuricans sp. nov., a novel sulfur, nitrate and arsenate reducing thermophile isolated from a deep-sea hydrothermal vent
    • Takai, K., Kobayashi, H., Nealson, K. H., and Horikoshi, K. (2003). Deferribacter desulfuricans sp. nov., a novel sulfur, nitrate-and arsenate-reducing thermophile isolated from a deep-sea hydrothermal vent. Int. J. Syst. Evol. Microbiol. 53, 839-846.
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 839-846
    • Takai, K.1    Kobayashi, H.2    Nealson, K.H.3    Horikoshi, K.4
  • 113
    • 0002058563 scopus 로고    scopus 로고
    • Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand
    • Thingstad, T., and Lignell, R. (1997). Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand. Aquat. Microb. Ecol. 13, 19-27.
    • (1997) Aquat. Microb. Ecol. , vol.13 , pp. 19-27
    • Thingstad, T.1    Lignell, R.2
  • 119
    • 35748974830 scopus 로고    scopus 로고
    • Occurrence, classification, and biological function of hydrogenases: an overview
    • Vignais, P. M., and Billoud, B. (2007). Occurrence, classification, and biological function of hydrogenases: an overview. Chem. Rev. 107, 4206-4272.
    • (2007) Chem. Rev. , vol.107 , pp. 4206-4272
    • Vignais, P.M.1    Billoud, B.2
  • 120
    • 0030057090 scopus 로고    scopus 로고
    • Lysogenic conversion by a filamentous phage encoding cholera toxin
    • Waldor, M. K., and Mekalanos, J. J. (1996). Lysogenic conversion by a filamentous phage encoding cholera toxin. Science 272, 1910-1914.
    • (1996) Science , vol.272 , pp. 1910-1914
    • Waldor, M.K.1    Mekalanos, J.J.2
  • 121
    • 44849097921 scopus 로고    scopus 로고
    • Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3
    • doi:10.1371/journal.pone.0001937
    • Wang, F., Wang, J., Jian, H., Zhang, B., Li, S., Wang, F., Zeng, X., Gao, L., Bartlett, D. H., Yu, J., Hu, S., and Xiao, X. (2008). Environmental adaptation: genomic analysis of the piezotolerant and psychrotolerant deep-sea iron reducing bacterium Shewanella piezotolerans WP3. PLoS ONE 3, e1937. doi:10.1371/journal.pone.0001937
    • (2008) PLoS ONE , vol.3
    • Wang, F.1    Wang, J.2    Jian, H.3    Zhang, B.4    Li, S.5    Wang, F.6    Zeng, X.7    Gao, L.8    Bartlett, D.H.9    Yu, J.10    Hu, S.11    Xiao, X.12
  • 123
    • 1942486000 scopus 로고    scopus 로고
    • Ecology of prokaryotic viruses
    • Weinbauer, M. G. (2004). Ecology of prokaryotic viruses. FEMS Microbiol. Rev. 28, 127-181.
    • (2004) FEMS Microbiol. Rev. , vol.28 , pp. 127-181
    • Weinbauer, M.G.1
  • 124
    • 0030426083 scopus 로고    scopus 로고
    • Phosphate removal by oceanic hydrothermal processes: an update of the phosphorus budget in the oceans
    • Wheat, G. C., Feely, R. A., and Mottl, M. J. (1996). Phosphate removal by oceanic hydrothermal processes: an update of the phosphorus budget in the oceans. Geochim. Cosmochim. Acta 60, 3593-3608.
    • (1996) Geochim. Cosmochim. Acta , vol.60 , pp. 3593-3608
    • Wheat, G.C.1    Feely, R.A.2    Mottl, M.J.3
  • 129
    • 74549213613 scopus 로고    scopus 로고
    • Evolution of DNA ligases of nucleo-cytoplasmic large DNA viruses of eukaryotes: a case of hidden complexity
    • Yutin, N., and Koonin, E. V. (2009). Evolution of DNA ligases of nucleo-cytoplasmic large DNA viruses of eukaryotes: a case of hidden complexity. Biol. Direct 4, 51.
    • (2009) Biol. Direct , vol.4 , pp. 51
    • Yutin, N.1    Koonin, E.V.2


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