-
1
-
-
1942486000
-
Ecology of prokaryotic viruses
-
Weinbauer MG (2004) Ecology of prokaryotic viruses. FEMS Microbiol Rev 28: 127-181.
-
(2004)
FEMS Microbiol Rev
, vol.28
, pp. 127-181
-
-
Weinbauer, M.G.1
-
2
-
-
0028247937
-
Bacterial viruses in coastal seawater: Lytic rather than lysogenic production
-
Wilcox RM, Fuhrman JA (1994) Bacterial viruses in coastal seawater: Lytic rather than lysogenic production. Mar Ecol Prog Ser 114: 35-45.
-
(1994)
Mar Ecol Prog Ser
, vol.114
, pp. 35-45
-
-
Wilcox, R.M.1
Fuhrman, J.A.2
-
4
-
-
0043197312
-
Phage as agents of lateral gene transfer
-
Canchaya C, Fournous G, Chibani-Chennoufi S, Dillmann ML, Brussow H (2003) Phage as agents of lateral gene transfer. Curr Opin Microbiol 6: 417-424.
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 417-424
-
-
Canchaya, C.1
Fournous, G.2
Chibani-Chennoufi, S.3
Dillmann, M.L.4
Brussow, H.5
-
5
-
-
85157985211
-
Mobile genetic elements and bacteria pathogenesis
-
Craig NL, Gragie R, Gellert M, Lambowitz AM, editors. Washington (DC): ASM Press
-
Davis BM, Waldor MK (2002) Mobile genetic elements and bacteria pathogenesis. In: Craig NL, Gragie R, Gellert M, Lambowitz AM, editors. Mobile DNA II. Washington (DC): ASM Press. pp. 1040-1055.
-
(2002)
Mobile DNA II
, pp. 1040-1055
-
-
Davis, B.M.1
Waldor, M.K.2
-
6
-
-
3042569657
-
Bacterial genomes as new gene homes: The genealogy of ORFans in E. coli
-
Daubin V, Ochman H (2004) Bacterial genomes as new gene homes: The genealogy of ORFans in E. coli. Genome Res 14: 1036-1042.
-
(2004)
Genome Res
, vol.14
, pp. 1036-1042
-
-
Daubin, V.1
Ochman, H.2
-
7
-
-
0002058563
-
Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand
-
Thingstad TF, Lignell R (1997) Theoretical models for the control of bacterial growth rate, abundance, diversity and carbon demand. Aquat Microb Ecol 13: 19-27.
-
(1997)
Aquat Microb Ecol
, vol.13
, pp. 19-27
-
-
Thingstad, T.F.1
Lignell, R.2
-
8
-
-
33751064905
-
-
Kjelstrup S, Hustad J, Gundersen T, Røsjorde A, Tsatsaronis G, editors. Trondheim (Norway): Tapir Academic Press
-
Hoffmann K, Rodriguez-Brito B, Breitbart M, Bangor D, Angly FE, et al. (2005) The structure of marine phage populations. In: Kjelstrup S, Hustad J, Gundersen T, Røsjorde A, Tsatsaronis G, editors. Trondheim (Norway): Tapir Academic Press. 5 p.
-
(2005)
The Structure of Marine Phage Populations
-
-
Hoffmann, K.1
Rodriguez-Brito, B.2
Breitbart, M.3
Bangor, D.4
Angly, F.E.5
-
9
-
-
14544287770
-
Genotypic diversity within a natural coastal bacterioplankton population
-
Thompson JR, Pacocha S, Pharino C, Klepac-Ceraj V, Hunt DE, et al. (2005) Genotypic diversity within a natural coastal bacterioplankton population. Science 307: 1311-1313.
-
(2005)
Science
, vol.307
, pp. 1311-1313
-
-
Thompson, J.R.1
Pacocha, S.2
Pharino, C.3
Klepac-Ceraj, V.4
Hunt, D.E.5
-
10
-
-
0037195156
-
Genomic analysis of uncultured marine viral communities
-
Breitbart M, Salamon P, Andresen B, Mahaffy JM, Segall AM, et al. (2002) Genomic analysis of uncultured marine viral communities. Proc Natl Acad Sci U S A 99: 14250-14255.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 14250-14255
-
-
Breitbart, M.1
Salamon, P.2
Andresen, B.3
Mahaffy, J.M.4
Segall, A.M.5
-
11
-
-
1642363900
-
Diversity and population structure of a nearshore marine sediment viral community
-
Breitbart M, Felts B, Kelley S, Mahaffy J, Nulton J, et al. (2004) Diversity and population structure of a nearshore marine sediment viral community. Proc R Soc Lond Ser B Biol Sci 271: 565-574.
-
(2004)
Proc R Soc Lond Ser B Biol Sci
, vol.271
, pp. 565-574
-
-
Breitbart, M.1
Felts, B.2
Kelley, S.3
Mahaffy, J.4
Nulton, J.5
-
12
-
-
0141891348
-
Metagenomic analyses of an uncultured viral community from human feces
-
Breitbart M, Hewson I, Felts B, Mahaffy JM, Nulton J, et al. (2003) Metagenomic analyses of an uncultured viral community from human feces. J Bacteriol 85: 6220-6223.
-
(2003)
J Bacteriol
, vol.85
, pp. 6220-6223
-
-
Breitbart, M.1
Hewson, I.2
Felts, B.3
Mahaffy, J.M.4
Nulton, J.5
-
13
-
-
33644873469
-
Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing
-
Breitbart M, Rohwer F (2005) Method for discovering novel DNA viruses in blood using viral particle selection and shotgun sequencing. Biotechniques 39: 729-736.
-
(2005)
Biotechniques
, vol.39
, pp. 729-736
-
-
Breitbart, M.1
Rohwer, F.2
-
14
-
-
33745595097
-
Using pyrosequencing to shed light on deep mine microbial ecology
-
Edwards R, Rodriguez-Brito B, Wegley L, Haynes M, Breitbart M, et al. (2006) Using pyrosequencing to shed light on deep mine microbial ecology. BMC Genomics 7.
-
(2006)
BMC Genomics
, vol.7
-
-
Edwards, R.1
Rodriguez-Brito, B.2
Wegley, L.3
Haynes, M.4
Breitbart, M.5
-
15
-
-
31144459030
-
RNA viral community in human feces: Prevalence of plant pathogenic viruses
-
DOI: 10.1371/journal.pbio.0040003
-
Zhang T, Breitbart M, Lee W, Run J-Q, Wei C, et al. (2006) RNA viral community in human feces: Prevalence of plant pathogenic viruses. PLoS Biol 4: e3. DOI: 10.1371/journal.pbio.0040003.
-
(2006)
PLoS Biol
, vol.4
-
-
Zhang, T.1
Breitbart, M.2
Lee, W.3
Run, J.-Q.4
Wei, C.5
-
16
-
-
1542377296
-
Community structure and metabolism through reconstruction of microbial genomes from the environment
-
Tyson GW, Chapman J, Hugenholtz P, Allen EE, Ram RJ, et al. (2004) Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428: 37-43.
-
(2004)
Nature
, vol.428
, pp. 37-43
-
-
Tyson, G.W.1
Chapman, J.2
Hugenholtz, P.3
Allen, E.E.4
Ram, R.J.5
-
17
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, et al. (2004) Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 66-74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
-
18
-
-
20244376755
-
Comparativemetagenomics of microbial communities
-
Tringe SG, von Mering C, Kobayashi A, Salamov AA, Chen K, et al. (2005) Comparativemetagenomics of microbial communities. Science 308: 554-557.
-
(2005)
Science
, vol.308
, pp. 554-557
-
-
Tringe, S.G.1
Von Mering, C.2
Kobayashi, A.3
Salamov, A.A.4
Chen, K.5
-
19
-
-
31544483932
-
Community genomics among stratified microbial assemblages in the ocean's interior
-
DeLong EF, Preston CM, Mincer T, Rich V, Hallam SJ, et al. (2006) Community genomics among stratified microbial assemblages in the ocean's interior. Science 311: 496-503.
-
(2006)
Science
, vol.311
, pp. 496-503
-
-
DeLong, E.F.1
Preston, C.M.2
Mincer, T.3
Rich, V.4
Hallam, S.J.5
-
21
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-480.
-
(2005)
Nature
, vol.437
, pp. 376-480
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
-
22
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
23
-
-
0036330981
-
The phage proteomic tree: A genome based taxonomy for phage
-
Rohwer F, Edwards R (2002) The phage proteomic tree: A genome based taxonomy for phage. J Bacteriol 184: 4529-4535.
-
(2002)
J Bacteriol
, vol.184
, pp. 4529-4535
-
-
Rohwer, F.1
Edwards, R.2
-
24
-
-
0036324293
-
Phylogenetic approaches for describing and comparing the diversity of microbial communities
-
Martin AP (2002) Phylogenetic approaches for describing and comparing the diversity of microbial communities. Appl Environ Microbiol 68: 3673-3682.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 3673-3682
-
-
Martin, A.P.1
-
29
-
-
19144363310
-
PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information
-
Angly F, Rodriguez-Brito B, Bangor D, McNairnie P, Breitbart M, et al. (2005) PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information. BMC Bioinformatics 6: 41.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 41
-
-
Angly, F.1
Rodriguez-Brito, B.2
Bangor, D.3
McNairnie, P.4
Breitbart, M.5
-
31
-
-
0003607962
-
-
New York: WH Freeman
-
Ricklefs RE (1990) Ecology. New York: WH Freeman. 896 p.
-
(1990)
Ecology
-
-
Ricklefs, R.E.1
-
32
-
-
0030060552
-
Simplifying the jargon of community ecology: A conceptual approach
-
Fauth JE, Bernardo J, Camara M, Resetarits WJ, Buskirk JV, et al. (1996) Simplifying the jargon of community ecology: A conceptual approach. Am Nat 147: 5.
-
(1996)
Am Nat
, vol.147
, pp. 5
-
-
Fauth, J.E.1
Bernardo, J.2
Camara, M.3
Resetarits, W.J.4
Buskirk, J.V.5
-
34
-
-
21344461027
-
Three Prochlorococcus cyanophage genomes: Signature features and ecological interpretations
-
DOI: 10.1371/journal.pbio.0030144
-
Sullivan MB, Coleman ML, Weigele P, Rohwer F, Chisholm SW (2005) Three Prochlorococcus cyanophage genomes: Signature features and ecological interpretations. PLoS Biol 3: e144. DOI: 10.1371/journal.pbio.0030144.
-
(2005)
PLoS Biol
, vol.3
-
-
Sullivan, M.B.1
Coleman, M.L.2
Weigele, P.3
Rohwer, F.4
Chisholm, S.W.5
-
35
-
-
0142152459
-
Genome sequences of two closely related Vibrio parahaemolyticus phages, VP16T and VP16C, that coexist in the same host
-
Seguritan V, Feng IW, Rohwer F, Swift M, Segall AM (2003) Genome sequences of two closely related Vibrio parahaemolyticus phages, VP16T and VP16C, that coexist in the same host. J Bacteriol 185: 6434-6447.
-
(2003)
J Bacteriol
, vol.185
, pp. 6434-6447
-
-
Seguritan, V.1
Feng, I.W.2
Rohwer, F.3
Swift, M.4
Segall, A.M.5
-
36
-
-
0034111671
-
The complete genomic sequence of the marine phage Roseophage SIO1 shares homology with non-marine phages
-
Rohwer F, Segall AM, Steward G, Seguritan V, Breitbart M, et al. (2000) The complete genomic sequence of the marine phage Roseophage SIO1 shares homology with non-marine phages. Limnol Oceanogr 42: 408-418.
-
(2000)
Limnol Oceanogr
, vol.42
, pp. 408-418
-
-
Rohwer, F.1
Segall, A.M.2
Steward, G.3
Seguritan, V.4
Breitbart, M.5
-
37
-
-
22544481110
-
Potential photosynthesis gene recombination between Prochlorococcus and Synechococcus via viral intermediates
-
Zeidner G, Bielawski JP, Shmoish M, Scanlan DJ, Sabehi G, et al. (2005) Potential photosynthesis gene recombination between Prochlorococcus and Synechococcus via viral intermediates. Environmental Microbiology 7: 1505-1513.
-
(2005)
Environmental Microbiology
, vol.7
, pp. 1505-1513
-
-
Zeidner, G.1
Bielawski, J.P.2
Shmoish, M.3
Scanlan, D.J.4
Sabehi, G.5
-
38
-
-
33747369803
-
Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts
-
DOI: 10.1371/journal.pbio.0040234
-
Sullivan MB, Lindell D, Lee JA, Thompson LR, Bielawski JP, et al. (2006) Prevalence and evolution of core photosystem II genes in marine cyanobacterial viruses and their hosts. PLoS Biol 4: e234. DOI: 10.1371/journal.pbio.0040234.
-
(2006)
PLoS Biol
, vol.4
-
-
Sullivan, M.B.1
Lindell, D.2
Lee, J.A.3
Thompson, L.R.4
Bielawski, J.P.5
-
39
-
-
22144484194
-
Previously unknown virus infects marine diatom
-
Nagasaki K, Tomaru Y, Takao Y, Nishida K, Shirai Y, et al. (2005) Previously unknown virus infects marine diatom. Appl Environ Microbiol 71: 3528-3535.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 3528-3535
-
-
Nagasaki, K.1
Tomaru, Y.2
Takao, Y.3
Nishida, K.4
Shirai, Y.5
-
40
-
-
31544448331
-
Microbial biogeography: Putting microorganisms on the map
-
Martiny JBH, Bohannan BJM, Brown JH, Colwell RK, Fuhrman JA, et al. (2006) Microbial biogeography: Putting microorganisms on the map. Nat Rev Microbiol 4: 102-112.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 102-112
-
-
Martiny, J.B.H.1
Bohannan, B.J.M.2
Brown, J.H.3
Colwell, R.K.4
Fuhrman, J.A.5
-
41
-
-
28944439917
-
An introduction to the biogeography of aquatic microbes
-
Dolan JR (2005) An introduction to the biogeography of aquatic microbes. Aquat Microb Ecol 41: 39-48.
-
(2005)
Aquat Microb Ecol
, vol.41
, pp. 39-48
-
-
Dolan, J.R.1
-
42
-
-
3142570537
-
Global distribution of nearly identical phage-encoded DNA sequences
-
Breitbart M, Rohwer F (2004) Global distribution of nearly identical phage-encoded DNA sequences. FEMS Microbiol Lett 236: 245-252.
-
(2004)
FEMS Microbiol Lett
, vol.236
, pp. 245-252
-
-
Breitbart, M.1
Rohwer, F.2
-
43
-
-
12244252269
-
Nearly identical bacteriophage structural gene sequences are widely distributed in marine and freshwater environments
-
Short CM, Suttle CA (2005) Nearly identical bacteriophage structural gene sequences are widely distributed in marine and freshwater environments. Appl Environ Microbiol 71: 480-486.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 480-486
-
-
Short, C.M.1
Suttle, C.A.2
-
44
-
-
3042722162
-
Strength, slope and variability of marine latitudinal gradients
-
Hillebrand H (2004) Strength, slope and variability of marine latitudinal gradients. Marine Ecol Prog Ser 273: 251-267.
-
(2004)
Marine Ecol Prog Ser
, vol.273
, pp. 251-267
-
-
Hillebrand, H.1
-
45
-
-
0000123207
-
The paradox of the plankton
-
Hutchinson GE (1961) The paradox of the plankton. Am Nat 95: 137-145.
-
(1961)
Am Nat
, vol.95
, pp. 137-145
-
-
Hutchinson, G.E.1
-
46
-
-
33645232361
-
Genomic islands and the ecology and evolution of Prochlorococcus
-
Coleman ML, Sullivan MB, Martiny AC, Steglich C, Barry K, et al. (2006) Genomic islands and the ecology and evolution of Prochlorococcus. Science 311: 1768-1770.
-
(2006)
Science
, vol.311
, pp. 1768-1770
-
-
Coleman, M.L.1
Sullivan, M.B.2
Martiny, A.C.3
Steglich, C.4
Barry, K.5
-
47
-
-
0042364932
-
High diversity of unknown picorna-like viruses in the sea
-
Culley AI, Lang AS, Suttle CA (2003) High diversity of unknown picorna-like viruses in the sea. Nature 424: 1054-1057.
-
(2003)
Nature
, vol.424
, pp. 1054-1057
-
-
Culley, A.I.1
Lang, A.S.2
Suttle, C.A.3
-
48
-
-
33745513227
-
Metagenomic analysis of coastal RNA virus communities
-
Culley AI, Lang AS, Suttle CA (2006) Metagenomic analysis of coastal RNA virus communities. Science 312: 1795-1798.
-
(2006)
Science
, vol.312
, pp. 1795-1798
-
-
Culley, A.I.1
Lang, A.S.2
Suttle, C.A.3
-
49
-
-
0011190383
-
Electron microscopy of submicron particles in natural waters: Specimen preparation by centrifugation
-
Nomizu T, Mizuike A (1986) Electron microscopy of submicron particles in natural waters: Specimen preparation by centrifugation. Mikrochim Acta 1: 65-72.
-
(1986)
Mikrochim Acta
, vol.1
, pp. 65-72
-
-
Nomizu, T.1
Mizuike, A.2
-
50
-
-
0000963974
-
Preliminary observations on the concentration of marine bacteriophages in the water around Helgoland
-
Moebus K (1991) Preliminary observations on the concentration of marine bacteriophages in the water around Helgoland. Helgo Meeresunters 45: 411-422.
-
(1991)
Helgo Meeresunters
, vol.45
, pp. 411-422
-
-
Moebus, K.1
-
51
-
-
0034517760
-
Genome size distributions indicate variability and similarities among marine viral assemblages from diverse environments
-
Steward GF, Montiel JL, Azam F (2000) Genome size distributions indicate variability and similarities among marine viral assemblages from diverse environments. Limnol Oceanogr 45: 1697-1706.
-
(2000)
Limnol Oceanogr
, vol.45
, pp. 1697-1706
-
-
Steward, G.F.1
Montiel, J.L.2
Azam, F.3
-
52
-
-
28444495886
-
Cell-free cloning using phi29 DNA polymerase
-
Hutchison IIICA,, Smith HO, Pfannkoch C, Venter JC (2005) Cell-free cloning using phi29 DNA polymerase. Proc Natl Acad Sci U S A 102: 17332-17336.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 17332-17336
-
-
Hutchison III, C.A.1
Smith, H.O.2
Pfannkoch, C.3
Venter, J.C.4
-
53
-
-
33745118646
-
Whole-metagenome amplification of a microbial community associated with scleractinian coral by multiple displacement amplification using phi-29 polymerase
-
Yokouchi H, Fukuoka Y, Mukoyama D, Calugay R, Takeyama H, et al. (2006) Whole-metagenome amplification of a microbial community associated with scleractinian coral by multiple displacement amplification using phi-29 polymerase. Environ Microbiol 8: 1155-1163.
-
(2006)
Environ Microbiol
, vol.8
, pp. 1155-1163
-
-
Yokouchi, H.1
Fukuoka, Y.2
Mukoyama, D.3
Calugay, R.4
Takeyama, H.5
-
54
-
-
33748591589
-
Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing
-
Pinard R, de Winter A, Sarkis GJ, Gerstein MB, Tartaro KR, et al. (2006) Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing. BMC Genomics: 7: 216.
-
(2006)
BMC Genomics
, vol.7
, pp. 216
-
-
Pinard, R.1
De Winter, A.2
Sarkis, G.J.3
Gerstein, M.B.4
Tartaro, K.R.5
-
56
-
-
33644845577
-
"Everything is everywhere, but, the environment selects"; what did Baas Becking and Beijerinck really say?
-
de Wit R, Bouvier T (2006) "Everything is everywhere, but, the environment selects"; what did Baas Becking and Beijerinck really say? Environ Microb 8: 755-758.
-
(2006)
Environ Microb
, vol.8
, pp. 755-758
-
-
De Wit, R.1
Bouvier, T.2
|